Wall clock time and date at job start Tue Mar 31 2020 18:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00211 * 2 1 4 4 H 1.09001 * 109.52487 * 330.12957 * 3 2 1 5 5 C 1.53099 * 109.52230 * 90.31232 * 3 2 1 6 6 O 1.42904 * 109.41561 * 177.51357 * 5 3 2 7 7 C 1.42899 * 114.09765 * 298.84525 * 6 5 3 8 8 C 1.53096 * 109.41518 * 61.15865 * 7 6 5 9 9 C 1.53178 * 109.16515 * 302.38780 * 8 7 6 10 10 H 1.08993 * 109.62103 * 176.89012 * 9 8 7 11 11 N 1.46506 * 109.54396 * 297.11994 * 9 8 7 12 12 C 1.46494 * 120.00147 * 114.80954 * 11 9 8 13 13 S 1.65602 * 119.99746 * 294.53089 * 11 9 8 14 14 O 1.42098 * 104.27773 * 206.07401 * 13 11 9 15 15 O 1.42105 * 104.27572 * 333.93204 * 13 11 9 16 16 C 1.81401 * 104.44966 * 90.00176 * 13 11 9 17 17 C 1.53003 * 109.47293 * 180.02562 * 16 13 11 18 18 C 1.52996 * 109.46982 * 300.00145 * 17 16 13 19 19 C 1.53004 * 109.46911 * 59.99781 * 17 16 13 20 20 C 1.50698 * 109.47084 * 179.97438 * 17 16 13 21 21 H 1.08000 * 119.99934 * 0.64697 * 20 17 16 22 22 C 1.37876 * 119.99836 * 180.64586 * 20 17 16 23 23 N 1.31515 * 120.00235 * 192.13911 * 22 20 17 24 24 Si 1.86801 * 119.99910 * 12.14365 * 22 20 17 25 25 H 1.48493 * 109.47452 * 85.44910 * 24 22 20 26 26 H 1.48500 * 109.47208 * 205.45094 * 24 22 20 27 27 H 1.48504 * 109.47234 * 325.44701 * 24 22 20 28 28 H 1.09001 * 109.47218 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.46996 * 59.99703 * 1 2 3 30 30 H 1.08998 * 109.47605 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47921 * 297.50041 * 5 3 2 32 32 H 1.09003 * 109.47373 * 57.53379 * 5 3 2 33 33 H 1.09002 * 109.48208 * 181.14159 * 7 6 5 34 34 H 1.09000 * 109.48169 * 301.16085 * 7 6 5 35 35 H 1.09006 * 109.52047 * 182.48925 * 8 7 6 36 36 H 1.08991 * 109.52459 * 62.30091 * 8 7 6 37 37 H 1.09005 * 109.46978 * 264.24274 * 12 11 9 38 38 H 1.08995 * 109.47413 * 24.24182 * 12 11 9 39 39 H 1.08999 * 109.47520 * 144.24456 * 12 11 9 40 40 H 1.09004 * 109.47206 * 299.99926 * 16 13 11 41 41 H 1.08996 * 109.47250 * 59.99644 * 16 13 11 42 42 H 1.09006 * 109.47440 * 70.33790 * 18 17 16 43 43 H 1.08997 * 109.47088 * 190.33552 * 18 17 16 44 44 H 1.09003 * 109.47141 * 310.33899 * 18 17 16 45 45 H 1.09004 * 109.47092 * 60.00407 * 19 17 16 46 46 H 1.08999 * 109.46992 * 179.97438 * 19 17 16 47 47 H 1.08999 * 109.47274 * 300.00529 * 19 17 16 48 48 H 0.96999 * 119.99776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0006 -0.5117 5 6 2.2256 1.7696 1.4430 6 8 2.8598 3.0502 1.4404 7 6 4.1472 3.0624 0.8204 8 6 4.0090 2.6503 -0.6476 9 6 3.3607 1.2645 -0.7219 10 1 3.2082 0.9872 -1.7649 11 7 4.2323 0.2802 -0.0754 12 6 3.7888 -0.4030 1.1423 13 16 5.7159 -0.0650 -0.7249 14 8 5.9914 -1.3881 -0.2860 15 8 5.5715 0.2333 -2.1068 16 6 6.8426 1.1159 0.0668 17 6 8.2630 0.8958 -0.4576 18 6 8.7105 -0.5312 -0.1346 19 6 8.2856 1.1067 -1.9729 20 6 9.1988 1.8772 0.1997 21 1 8.8203 2.5800 0.9272 22 6 10.5381 1.8779 -0.1277 23 7 11.3937 2.5573 0.6044 24 14 11.1374 0.9140 -1.6113 25 1 10.9941 1.7458 -2.8330 26 1 12.5655 0.5529 -1.4230 27 1 10.3291 -0.3232 -1.7572 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2629 1.8416 1.9490 32 1 2.8582 1.0517 1.9651 33 1 4.5689 4.0659 0.8781 34 1 4.8050 2.3617 1.3346 35 1 4.9953 2.6162 -1.1107 36 1 3.3843 3.3734 -1.1717 37 1 4.1840 0.1170 2.0150 38 1 2.6996 -0.4039 1.1822 39 1 4.1530 -1.4303 1.1357 40 1 6.5240 2.1325 -0.1637 41 1 6.8261 0.9660 1.1463 42 1 8.1527 -1.2354 -0.7520 43 1 9.7761 -0.6330 -0.3398 44 1 8.5213 -0.7418 0.9180 45 1 7.9667 2.1233 -2.2030 46 1 9.2975 0.9504 -2.3464 47 1 7.6085 0.3972 -2.4486 48 1 12.3359 2.5581 0.3738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882739834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:01 Heat of formation + Delta-G solvation = -109.125074 kcal Electronic energy + Delta-G solvation = -30682.472184 eV Core-core repulsion = 26674.437632 eV Total energy + Delta-G solvation = -4008.034552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64963 -37.62712 -36.80501 -36.73953 -35.86343 -35.40534 -32.13263 -31.87418 -30.49381 -27.53922 -27.22420 -26.89763 -26.40237 -25.03126 -23.76614 -23.35263 -20.95249 -19.65099 -18.37480 -17.57033 -17.53369 -16.68420 -16.26975 -16.10433 -16.02377 -15.79653 -15.32067 -15.14224 -15.03900 -14.46266 -14.06717 -13.61958 -13.51216 -13.38029 -13.17251 -12.94703 -12.77368 -12.61258 -12.52702 -12.29431 -12.22176 -12.05374 -11.73524 -11.55962 -11.49488 -11.46997 -11.15523 -11.06965 -10.92936 -10.78209 -10.37573 -10.19756 -10.14970 -10.02511 -9.94279 -9.38223 -9.13393 -8.87043 -8.71900 -8.49523 -6.19741 -4.18353 0.65621 2.87169 3.18923 3.24051 3.33630 3.37876 3.79415 4.19123 4.23605 4.33056 4.44593 4.51457 4.70924 4.76834 4.82414 4.94034 5.00969 5.02868 5.09422 5.20216 5.32205 5.35310 5.39512 5.43155 5.46779 5.48120 5.60880 5.70215 5.79071 5.82520 5.98692 6.06229 6.06874 6.19360 6.29853 6.41784 6.47268 6.54800 6.69134 6.75930 6.85127 7.04182 7.11072 7.29392 7.60575 8.37610 8.81936 9.43617 10.92749 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.004238 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.187702 B = 6604.958500 C = 7155.899050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.366 6.366 3 C 0.057 3.943 4 H 0.083 0.917 5 C 0.013 3.987 6 O -0.374 6.374 7 C 0.054 3.946 8 C -0.186 4.186 9 C 0.157 3.843 10 H 0.097 0.903 11 N -0.999 5.999 12 C 0.058 3.942 13 S 2.590 3.410 14 O -0.959 6.959 15 O -0.962 6.962 16 C -0.581 4.581 17 C 0.055 3.945 18 C -0.173 4.173 19 C -0.179 4.179 20 C -0.506 4.506 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.890 5.890 24 Si 0.869 3.131 25 H -0.281 1.281 26 H -0.300 1.300 27 H -0.242 1.242 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.441 -1.854 0.466 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.285 6.285 3 C -0.002 4.002 4 H 0.101 0.899 5 C -0.064 4.064 6 O -0.292 6.292 7 C -0.022 4.022 8 C -0.225 4.225 9 C 0.051 3.949 10 H 0.115 0.885 11 N -0.836 5.836 12 C -0.086 4.086 13 S 2.688 3.312 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.713 4.713 17 C 0.052 3.948 18 C -0.231 4.231 19 C -0.236 4.236 20 C -0.544 4.544 21 H 0.096 0.904 22 C -0.126 4.126 23 N -0.527 5.527 24 Si 0.701 3.299 25 H -0.208 1.208 26 H -0.228 1.228 27 H -0.168 1.168 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.115 -2.506 -0.045 21.263 hybrid contribution 0.509 0.227 -0.513 0.758 sum -20.606 -2.279 -0.559 20.739 Atomic orbital electron populations 1.22907 0.81257 1.03056 1.00171 1.88009 1.19511 1.26579 1.94410 1.22898 0.94357 0.85576 0.97372 0.89890 1.23797 0.99529 0.87208 0.95881 1.87942 1.32397 1.29735 1.79150 1.22727 0.84922 1.03193 0.91385 1.22913 1.03574 0.96898 0.99120 1.21015 0.88363 0.87753 0.97783 0.88544 1.57558 1.33745 1.53285 1.38994 1.22349 1.04283 0.97251 0.84689 1.05773 0.73658 0.76571 0.75151 1.93541 1.83875 1.34541 1.82937 1.93528 1.84871 1.86131 1.30670 1.30611 1.12220 1.15510 1.12973 1.18232 0.88939 0.95454 0.92177 1.22748 1.02928 0.96081 1.01326 1.22768 1.01054 1.02156 0.97624 1.20648 0.91418 1.17801 1.24576 0.90356 1.24960 0.96493 0.94949 0.96193 1.69914 1.02961 1.42339 1.37478 0.87535 0.76711 0.82068 0.83585 1.20823 1.22819 1.16804 0.93854 0.93758 0.89366 0.89016 0.89293 0.87805 0.92057 0.89183 0.88777 0.93283 0.86914 0.90338 0.85713 0.85595 0.94514 0.91159 0.92347 0.91803 0.93062 0.93290 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.82 101.05 1.09 1.24 16 2 O -0.37 -3.59 7.61 -35.23 -0.27 -3.85 16 3 C 0.06 0.56 2.39 -26.59 -0.06 0.49 16 4 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 5 C 0.01 0.12 5.91 37.21 0.22 0.34 16 6 O -0.37 -4.23 10.77 -35.23 -0.38 -4.61 16 7 C 0.05 0.61 6.23 37.21 0.23 0.84 16 8 C -0.19 -2.10 5.23 -26.59 -0.14 -2.24 16 9 C 0.16 1.90 2.53 -67.74 -0.17 1.73 16 10 H 0.10 1.23 7.72 -51.93 -0.40 0.83 16 11 N -1.00 -13.81 2.58 -114.42 -0.30 -14.11 16 12 C 0.06 0.70 8.25 59.84 0.49 1.19 16 13 S 2.59 45.98 3.84 -107.50 -0.41 45.57 16 14 O -0.96 -19.25 14.49 -57.54 -0.83 -20.09 16 15 O -0.96 -18.75 14.37 -57.54 -0.83 -19.58 16 16 C -0.58 -10.59 4.06 37.16 0.15 -10.44 16 17 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 18 C -0.17 -3.92 6.90 37.16 0.26 -3.66 16 19 C -0.18 -3.99 7.29 37.16 0.27 -3.72 16 20 C -0.51 -13.40 8.62 -34.44 -0.30 -13.70 16 21 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 22 C 0.08 2.15 5.34 -17.82 -0.10 2.05 16 23 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 24 Si 0.87 21.35 22.73 -169.99 -3.86 17.48 16 25 H -0.28 -6.80 7.08 56.52 0.40 -6.40 16 26 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.24 -5.58 4.59 56.52 0.26 -5.32 16 28 H 0.04 0.23 7.96 -51.93 -0.41 -0.19 16 29 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.71 7.96 -51.93 -0.41 0.29 16 32 H 0.09 0.85 3.76 -51.93 -0.20 0.65 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.72 6.78 -51.93 -0.35 0.37 16 35 H 0.09 1.11 5.59 -51.93 -0.29 0.82 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.51 7.01 -51.93 -0.36 0.14 16 38 H 0.11 1.18 3.42 -52.12 -0.18 1.00 16 39 H 0.08 1.01 7.05 -51.93 -0.37 0.65 16 40 H 0.12 2.03 5.48 -51.92 -0.28 1.75 16 41 H 0.13 2.11 8.14 -51.93 -0.42 1.68 16 42 H 0.04 0.79 6.22 -51.93 -0.32 0.46 16 43 H 0.07 1.63 4.05 -51.93 -0.21 1.42 16 44 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.05 1.18 2.44 -51.93 -0.13 1.05 16 47 H 0.05 1.03 5.46 -51.93 -0.28 0.75 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -33.15 345.10 -6.29 -39.44 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.26 Total: 4.82 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 1.87 Total: -24.72 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.48 Total: -39.66 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.31 Total: -48.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.86 Total: 17.48 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.41 Total: 45.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.15 -6.29 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.682 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds