Wall clock time and date at job start Tue Mar 31 2020 18:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00211 * 2 1 4 4 H 1.09001 * 109.52487 * 330.12957 * 3 2 1 5 5 C 1.53099 * 109.52230 * 90.31232 * 3 2 1 6 6 O 1.42904 * 109.41561 * 177.51357 * 5 3 2 7 7 C 1.42899 * 114.09765 * 298.84525 * 6 5 3 8 8 C 1.53096 * 109.41518 * 61.15865 * 7 6 5 9 9 C 1.53178 * 109.16515 * 302.38780 * 8 7 6 10 10 H 1.08993 * 109.62103 * 176.89012 * 9 8 7 11 11 N 1.46506 * 109.54396 * 297.11994 * 9 8 7 12 12 C 1.46494 * 120.00147 * 114.80954 * 11 9 8 13 13 S 1.65602 * 119.99746 * 294.53089 * 11 9 8 14 14 O 1.42098 * 104.27773 * 206.07401 * 13 11 9 15 15 O 1.42105 * 104.27572 * 333.93204 * 13 11 9 16 16 C 1.81401 * 104.44966 * 90.00176 * 13 11 9 17 17 C 1.53003 * 109.47293 * 180.02562 * 16 13 11 18 18 C 1.52996 * 109.46982 * 300.00145 * 17 16 13 19 19 C 1.53004 * 109.46911 * 59.99781 * 17 16 13 20 20 C 1.50698 * 109.47084 * 179.97438 * 17 16 13 21 21 H 1.08000 * 119.99934 * 0.64697 * 20 17 16 22 22 C 1.37876 * 119.99836 * 180.64586 * 20 17 16 23 23 N 1.31515 * 120.00235 * 192.13911 * 22 20 17 24 24 Si 1.86801 * 119.99910 * 12.14365 * 22 20 17 25 25 H 1.48493 * 109.47452 * 85.44910 * 24 22 20 26 26 H 1.48500 * 109.47208 * 205.45094 * 24 22 20 27 27 H 1.48504 * 109.47234 * 325.44701 * 24 22 20 28 28 H 1.09001 * 109.47218 * 300.00291 * 1 2 3 29 29 H 1.09004 * 109.46996 * 59.99703 * 1 2 3 30 30 H 1.08998 * 109.47605 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47921 * 297.50041 * 5 3 2 32 32 H 1.09003 * 109.47373 * 57.53379 * 5 3 2 33 33 H 1.09002 * 109.48208 * 181.14159 * 7 6 5 34 34 H 1.09000 * 109.48169 * 301.16085 * 7 6 5 35 35 H 1.09006 * 109.52047 * 182.48925 * 8 7 6 36 36 H 1.08991 * 109.52459 * 62.30091 * 8 7 6 37 37 H 1.09005 * 109.46978 * 264.24274 * 12 11 9 38 38 H 1.08995 * 109.47413 * 24.24182 * 12 11 9 39 39 H 1.08999 * 109.47520 * 144.24456 * 12 11 9 40 40 H 1.09004 * 109.47206 * 299.99926 * 16 13 11 41 41 H 1.08996 * 109.47250 * 59.99644 * 16 13 11 42 42 H 1.09006 * 109.47440 * 70.33790 * 18 17 16 43 43 H 1.08997 * 109.47088 * 190.33552 * 18 17 16 44 44 H 1.09003 * 109.47141 * 310.33899 * 18 17 16 45 45 H 1.09004 * 109.47092 * 60.00407 * 19 17 16 46 46 H 1.08999 * 109.46992 * 179.97438 * 19 17 16 47 47 H 1.08999 * 109.47274 * 300.00529 * 19 17 16 48 48 H 0.96999 * 119.99776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 2.0006 -0.5117 5 6 2.2256 1.7696 1.4430 6 8 2.8598 3.0502 1.4404 7 6 4.1472 3.0624 0.8204 8 6 4.0090 2.6503 -0.6476 9 6 3.3607 1.2645 -0.7219 10 1 3.2082 0.9872 -1.7649 11 7 4.2323 0.2802 -0.0754 12 6 3.7888 -0.4030 1.1423 13 16 5.7159 -0.0650 -0.7249 14 8 5.9914 -1.3881 -0.2860 15 8 5.5715 0.2333 -2.1068 16 6 6.8426 1.1159 0.0668 17 6 8.2630 0.8958 -0.4576 18 6 8.7105 -0.5312 -0.1346 19 6 8.2856 1.1067 -1.9729 20 6 9.1988 1.8772 0.1997 21 1 8.8203 2.5800 0.9272 22 6 10.5381 1.8779 -0.1277 23 7 11.3937 2.5573 0.6044 24 14 11.1374 0.9140 -1.6113 25 1 10.9941 1.7458 -2.8330 26 1 12.5655 0.5529 -1.4230 27 1 10.3291 -0.3232 -1.7572 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2629 1.8416 1.9490 32 1 2.8582 1.0517 1.9651 33 1 4.5689 4.0659 0.8781 34 1 4.8050 2.3617 1.3346 35 1 4.9953 2.6162 -1.1107 36 1 3.3843 3.3734 -1.1717 37 1 4.1840 0.1170 2.0150 38 1 2.6996 -0.4039 1.1822 39 1 4.1530 -1.4303 1.1357 40 1 6.5240 2.1325 -0.1637 41 1 6.8261 0.9660 1.1463 42 1 8.1527 -1.2354 -0.7520 43 1 9.7761 -0.6330 -0.3398 44 1 8.5213 -0.7418 0.9180 45 1 7.9667 2.1233 -2.2030 46 1 9.2975 0.9504 -2.3464 47 1 7.6085 0.3972 -2.4486 48 1 12.3359 2.5581 0.3738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882739834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:00 Heat of formation + Delta-G solvation = -134.796536 kcal Electronic energy + Delta-G solvation = -30683.585382 eV Core-core repulsion = 26674.437632 eV Total energy + Delta-G solvation = -4009.147750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46871 -38.57841 -38.35163 -38.20804 -37.05212 -36.66631 -34.05768 -32.95426 -31.28461 -29.05132 -28.20546 -28.13933 -27.47280 -27.09359 -24.68757 -24.14959 -21.94257 -21.40558 -19.69386 -18.81226 -18.32615 -18.14740 -17.56142 -17.35423 -17.14767 -17.01564 -16.71450 -16.24774 -16.00751 -15.38864 -15.11381 -15.01819 -14.91775 -14.81941 -14.44394 -14.33991 -14.21463 -14.09740 -13.68602 -13.48815 -13.31900 -13.15950 -12.99677 -12.86342 -12.80215 -12.67442 -12.60679 -12.47725 -12.29043 -11.96685 -11.91209 -11.84655 -11.81790 -11.16178 -11.00160 -10.83119 -10.71247 -10.50784 -10.17366 -9.90155 -8.34274 -6.34742 -0.74037 1.28920 1.35006 1.41889 1.66111 2.29129 2.46429 2.78439 3.00105 3.02553 3.12873 3.41385 3.67993 3.73162 3.85527 3.92091 3.97014 4.08571 4.11329 4.21417 4.36489 4.48616 4.48971 4.53329 4.55907 4.59957 4.62586 4.66798 4.67300 4.73543 4.79273 4.80939 4.91207 4.92564 4.95550 5.00064 5.12592 5.14474 5.21160 5.35311 5.50114 5.59045 5.61098 6.01137 6.26120 6.31372 6.68499 7.30177 8.81390 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.004238 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.187702 B = 6604.958500 C = 7155.899050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.385 6.385 3 C 0.064 3.936 4 H 0.102 0.898 5 C 0.009 3.991 6 O -0.381 6.381 7 C 0.052 3.948 8 C -0.187 4.187 9 C 0.148 3.852 10 H 0.088 0.912 11 N -0.991 5.991 12 C 0.051 3.949 13 S 2.606 3.394 14 O -0.983 6.983 15 O -0.980 6.980 16 C -0.586 4.586 17 C 0.046 3.954 18 C -0.178 4.178 19 C -0.184 4.184 20 C -0.498 4.498 21 H 0.053 0.947 22 C 0.028 3.972 23 N -0.936 5.936 24 Si 0.910 3.090 25 H -0.275 1.275 26 H -0.305 1.305 27 H -0.219 1.219 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.043 0.957 47 H 0.060 0.940 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.047 -2.219 0.137 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.305 6.305 3 C 0.005 3.995 4 H 0.120 0.880 5 C -0.068 4.068 6 O -0.300 6.300 7 C -0.025 4.025 8 C -0.226 4.226 9 C 0.042 3.958 10 H 0.106 0.894 11 N -0.829 5.829 12 C -0.093 4.093 13 S 2.704 3.296 14 O -0.974 6.974 15 O -0.970 6.970 16 C -0.717 4.717 17 C 0.044 3.956 18 C -0.235 4.235 19 C -0.241 4.241 20 C -0.537 4.537 21 H 0.071 0.929 22 C -0.171 4.171 23 N -0.575 5.575 24 Si 0.739 3.261 25 H -0.202 1.202 26 H -0.234 1.234 27 H -0.144 1.144 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.733 -2.880 -0.382 23.910 hybrid contribution 1.152 0.366 -0.340 1.256 sum -22.580 -2.514 -0.722 22.731 Atomic orbital electron populations 1.23105 0.79431 1.04052 1.01341 1.87949 1.21463 1.26572 1.94487 1.22830 0.93218 0.86130 0.97329 0.88026 1.23935 1.00418 0.86482 0.95920 1.87937 1.32197 1.30740 1.79114 1.22738 0.85103 1.03377 0.91247 1.22932 1.03238 0.97060 0.99332 1.21245 0.89496 0.87430 0.97648 0.89363 1.57254 1.32209 1.53856 1.39616 1.22603 1.05624 0.96666 0.84360 1.05030 0.74250 0.75707 0.74614 1.93506 1.84755 1.35864 1.83236 1.93495 1.85359 1.86221 1.31958 1.30613 1.10121 1.17172 1.13798 1.18206 0.90649 0.94341 0.92431 1.22763 1.02422 0.96262 1.02094 1.22792 1.00894 1.03205 0.97186 1.20899 0.91957 1.17433 1.23423 0.92924 1.25632 0.96961 0.96095 0.98418 1.70030 1.03302 1.44771 1.39439 0.86848 0.76170 0.82143 0.80890 1.20222 1.23379 1.14356 0.92240 0.93015 0.88572 0.86792 0.89477 0.87249 0.92828 0.90531 0.86700 0.91619 0.84993 0.91501 0.84104 0.84450 0.93481 0.92102 0.91703 0.90901 0.93845 0.92083 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.39 16 2 O -0.39 -6.43 7.61 -148.98 -1.13 -7.56 16 3 C 0.06 1.06 2.39 30.69 0.07 1.13 16 4 H 0.10 1.31 7.79 -2.39 -0.02 1.29 16 5 C 0.01 0.14 5.91 72.02 0.43 0.57 16 6 O -0.38 -7.64 10.77 -148.98 -1.60 -9.24 16 7 C 0.05 1.08 6.23 72.01 0.45 1.52 16 8 C -0.19 -3.85 5.23 30.69 0.16 -3.69 16 9 C 0.15 3.26 2.53 45.11 0.11 3.37 16 10 H 0.09 2.10 7.72 -2.39 -0.02 2.08 16 11 N -0.99 -25.68 2.58 -515.90 -1.33 -27.01 16 12 C 0.05 1.11 8.25 127.77 1.05 2.17 16 13 S 2.61 89.07 3.84 -56.49 -0.22 88.85 16 14 O -0.98 -38.36 14.49 -127.65 -1.85 -40.20 16 15 O -0.98 -36.90 14.37 -127.65 -1.83 -38.73 16 16 C -0.59 -20.77 4.06 71.98 0.29 -20.47 16 17 C 0.05 2.05 0.52 -52.93 -0.03 2.03 16 18 C -0.18 -7.86 6.90 71.98 0.50 -7.36 16 19 C -0.18 -7.94 7.29 71.98 0.52 -7.41 16 20 C -0.50 -26.57 8.62 25.60 0.22 -26.35 16 21 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 22 C 0.03 1.55 5.34 84.65 0.45 2.00 16 23 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 24 Si 0.91 43.69 22.73 68.60 1.56 45.25 16 25 H -0.28 -12.86 7.08 99.48 0.70 -12.15 16 26 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.22 -9.65 4.59 99.48 0.46 -9.19 16 28 H 0.06 0.40 7.96 -2.39 -0.02 0.38 16 29 H 0.05 0.44 8.09 -2.38 -0.02 0.42 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.31 7.96 -2.39 -0.02 1.29 16 32 H 0.09 1.41 3.76 -2.39 -0.01 1.40 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.17 6.78 -2.39 -0.02 1.16 16 35 H 0.08 1.79 5.59 -2.38 -0.01 1.77 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.22 7.01 -2.38 -0.02 1.20 16 38 H 0.13 2.42 3.42 -5.37 -0.02 2.41 16 39 H 0.07 1.64 7.05 -2.39 -0.02 1.62 16 40 H 0.14 4.46 5.48 -2.39 -0.01 4.45 16 41 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 42 H 0.05 1.96 6.22 -2.38 -0.01 1.94 16 43 H 0.06 2.76 4.05 -2.39 -0.01 2.75 16 44 H 0.06 2.71 8.11 -2.39 -0.02 2.69 16 45 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 46 H 0.04 1.93 2.44 -2.39 -0.01 1.92 16 47 H 0.06 2.48 5.46 -2.39 -0.01 2.46 16 48 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -70.81 345.10 0.07 -70.74 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.72 Total: 25.34 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 5.46 Total: -51.11 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.03 Total: -83.32 kcal Atomic # 8 Polarization: -89.32 SS G_CDS: -6.42 Total: -95.74 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.56 Total: 45.25 kcal Atomic # 16 Polarization: 89.07 SS G_CDS: -0.22 Total: 88.85 kcal Total: -70.81 0.07 -70.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.056 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds