Wall clock time and date at job start Tue Mar 31 2020 18:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00114 * 2 1 4 4 H 1.08999 * 109.56889 * 330.15468 * 3 2 1 5 5 C 1.53083 * 109.52382 * 90.31453 * 3 2 1 6 6 O 1.42907 * 109.41633 * 177.51325 * 5 3 2 7 7 C 1.42893 * 114.09900 * 298.84265 * 6 5 3 8 8 C 1.53099 * 109.41745 * 61.15608 * 7 6 5 9 9 C 1.53179 * 109.52112 * 210.00220 * 3 2 1 10 10 H 1.08999 * 109.61366 * 303.02073 * 9 3 2 11 11 N 1.46494 * 109.54577 * 63.24510 * 9 3 2 12 12 C 1.46496 * 120.00270 * 59.55708 * 11 9 3 13 13 S 1.65605 * 119.99885 * 239.55695 * 11 9 3 14 14 O 1.42098 * 104.27776 * 153.92886 * 13 11 9 15 15 O 1.42101 * 104.27890 * 26.06731 * 13 11 9 16 16 C 1.81403 * 104.44959 * 269.99797 * 13 11 9 17 17 C 1.53001 * 109.47298 * 179.97438 * 16 13 11 18 18 C 1.52998 * 109.46910 * 59.99957 * 17 16 13 19 19 C 1.53003 * 109.47075 * 300.00454 * 17 16 13 20 20 C 1.50692 * 109.47038 * 179.97438 * 17 16 13 21 21 H 1.07996 * 120.00361 * 357.32135 * 20 17 16 22 22 C 1.37876 * 119.99836 * 177.32123 * 20 17 16 23 23 N 1.31518 * 120.00051 * 6.50099 * 22 20 17 24 24 Si 1.86806 * 120.00121 * 186.50128 * 22 20 17 25 25 H 1.48495 * 109.47013 * 84.98802 * 24 22 20 26 26 H 1.48495 * 109.46861 * 324.98990 * 24 22 20 27 27 H 1.48499 * 109.47252 * 204.98988 * 24 22 20 28 28 H 1.09006 * 109.47078 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47191 * 300.00340 * 1 2 3 31 31 H 1.09001 * 109.48533 * 57.53079 * 5 3 2 32 32 H 1.09004 * 109.48447 * 297.49499 * 5 3 2 33 33 H 1.08998 * 109.48201 * 301.17558 * 7 6 5 34 34 H 1.09005 * 109.49342 * 181.14188 * 7 6 5 35 35 H 1.08996 * 109.52366 * 182.48752 * 8 7 6 36 36 H 1.09005 * 109.57279 * 62.32469 * 8 7 6 37 37 H 1.09005 * 109.46820 * 270.00053 * 12 11 9 38 38 H 1.08997 * 109.47335 * 29.99965 * 12 11 9 39 39 H 1.08994 * 109.47678 * 150.00244 * 12 11 9 40 40 H 1.08997 * 109.46860 * 59.99681 * 16 13 11 41 41 H 1.09004 * 109.47078 * 300.00096 * 16 13 11 42 42 H 1.09000 * 109.47346 * 180.02562 * 18 17 16 43 43 H 1.09002 * 109.47765 * 300.00153 * 18 17 16 44 44 H 1.09004 * 109.47095 * 60.00081 * 18 17 16 45 45 H 1.09004 * 109.46489 * 306.77987 * 19 17 16 46 46 H 1.08992 * 109.47480 * 66.77936 * 19 17 16 47 47 H 1.08993 * 109.46657 * 186.78473 * 19 17 16 48 48 H 0.97001 * 119.99624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0013 -0.5111 5 6 2.2256 1.7696 1.4428 6 8 2.8598 3.0502 1.4402 7 6 4.1471 3.0625 0.8202 8 6 4.0091 2.6503 -0.6477 9 6 3.3606 1.2645 -0.7219 10 1 4.0098 0.5320 -0.2423 11 7 3.1556 0.8939 -2.1243 12 6 2.3111 1.7251 -2.9857 13 16 3.8785 -0.4648 -2.7358 14 8 3.0363 -0.8559 -3.8114 15 8 4.0596 -1.3050 -1.6042 16 6 5.4796 0.1163 -3.3599 17 6 6.2522 -1.0617 -3.9570 18 6 5.4467 -1.6694 -5.1070 19 6 6.4798 -2.1219 -2.8777 20 6 7.5820 -0.5788 -4.4760 21 1 7.8315 0.4709 -4.4280 22 6 8.4801 -1.4771 -5.0121 23 7 8.1290 -2.7322 -5.1885 24 14 10.1957 -0.9114 -5.4879 25 1 11.0800 -0.9560 -4.2958 26 1 10.1326 0.4789 -6.0057 27 1 10.7382 -1.8075 -6.5405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.8581 1.0518 1.9651 32 1 1.2629 1.8418 1.9490 33 1 4.8048 2.3616 1.3342 34 1 4.5690 4.0660 0.8778 35 1 4.9952 2.6163 -1.1108 36 1 3.3847 3.3732 -1.1728 37 1 1.2806 1.3740 -2.9321 38 1 2.3598 2.7614 -2.6515 39 1 2.6645 1.6582 -4.0146 40 1 6.0536 0.5489 -2.5405 41 1 5.3174 0.8719 -4.1286 42 1 5.9968 -2.5089 -5.5322 43 1 4.4846 -2.0186 -4.7321 44 1 5.2845 -0.9141 -5.8760 45 1 6.9469 -1.6602 -2.0077 46 1 5.5233 -2.5571 -2.5884 47 1 7.1315 -2.9036 -3.2680 48 1 8.7611 -3.3642 -5.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882739836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:06 Heat of formation + Delta-G solvation = -155.997104 kcal Electronic energy + Delta-G solvation = -29992.282978 eV Core-core repulsion = 25982.215902 eV Total energy + Delta-G solvation = -4010.067076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12869 -37.42685 -36.52779 -36.31020 -36.15512 -35.19032 -31.76471 -31.64440 -30.53379 -26.91776 -26.74913 -26.51606 -25.72044 -25.23415 -24.09119 -23.34577 -20.38422 -19.43407 -18.54486 -17.44366 -17.19075 -16.68037 -16.30762 -15.96930 -15.60410 -15.32998 -15.17192 -15.02041 -14.72506 -14.21811 -14.15896 -13.74821 -13.39903 -13.15875 -13.05174 -12.99249 -12.51004 -12.47077 -12.16947 -11.94769 -11.69160 -11.67635 -11.48266 -11.38083 -11.26686 -11.09935 -11.04188 -10.93346 -10.69370 -10.56464 -10.36364 -10.29907 -10.26450 -10.08767 -9.66476 -9.56593 -9.49437 -8.93155 -8.62747 -8.38398 -6.04617 -4.16239 0.85207 3.05917 3.25284 3.32391 3.33628 3.35045 3.80181 4.33745 4.42185 4.46056 4.54989 4.62176 4.71216 4.81955 4.91317 4.98328 5.08309 5.14074 5.20170 5.23224 5.35190 5.43102 5.45481 5.49498 5.54914 5.57800 5.64269 5.68240 5.74475 5.78131 5.86535 6.16294 6.37679 6.66507 6.68530 6.76730 6.78874 6.91609 7.04828 7.12342 7.30618 7.48358 7.66924 7.97441 8.09170 8.32984 8.82001 9.48859 10.96542 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.003828 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.384625 B = 7313.696312 C = 8056.988346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.051 3.949 4 H 0.073 0.927 5 C 0.041 3.959 6 O -0.378 6.378 7 C 0.059 3.941 8 C -0.169 4.169 9 C 0.150 3.850 10 H 0.111 0.889 11 N -1.001 6.001 12 C 0.093 3.907 13 S 2.593 3.407 14 O -0.961 6.961 15 O -0.953 6.953 16 C -0.585 4.585 17 C 0.082 3.918 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.502 4.502 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.882 5.882 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.275 1.275 27 H -0.286 1.286 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.034 0.966 46 H 0.026 0.974 47 H 0.094 0.906 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 11.543 10.494 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.282 6.282 3 C -0.009 4.009 4 H 0.091 0.909 5 C -0.037 4.037 6 O -0.296 6.296 7 C -0.019 4.019 8 C -0.208 4.208 9 C 0.043 3.957 10 H 0.129 0.871 11 N -0.835 5.835 12 C -0.052 4.052 13 S 2.692 3.308 14 O -0.951 6.951 15 O -0.943 6.943 16 C -0.718 4.718 17 C 0.080 3.920 18 C -0.221 4.221 19 C -0.218 4.218 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.520 5.520 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.200 1.200 27 H -0.212 1.212 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.113 0.887 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.404 10.497 10.484 19.338 hybrid contribution 1.248 0.874 -0.584 1.631 sum -11.156 11.370 9.900 18.755 Atomic orbital electron populations 1.22844 0.81280 1.03042 0.99700 1.88070 1.19384 1.25954 1.94800 1.23112 0.95800 0.85983 0.96033 0.90905 1.23089 0.98891 0.85656 0.96065 1.87936 1.32414 1.30108 1.79175 1.22668 0.84990 1.02817 0.91404 1.22707 1.02926 0.96838 0.98336 1.20977 0.95800 0.97354 0.81604 0.87077 1.57763 1.63079 1.46064 1.16635 1.21377 0.94811 0.95064 0.93956 1.05805 0.77263 0.73404 0.74350 1.93528 1.65312 1.79906 1.56380 1.93547 1.87062 1.63103 1.50608 1.30628 1.18814 1.11515 1.10871 1.17926 0.94235 0.87592 0.92277 1.22300 0.97321 1.03022 0.99450 1.22206 1.00672 1.01571 0.97381 1.20924 0.99008 0.94008 1.40226 0.92342 1.24940 0.98550 0.95011 0.95206 1.69816 1.34913 1.03112 1.44151 0.86569 0.84430 0.78547 0.78203 1.20529 1.20025 1.21174 0.93991 0.89380 0.94179 0.91667 0.88594 0.92278 0.88049 0.89173 0.90024 0.92997 0.91386 0.90771 0.86620 0.86601 0.88483 0.95507 0.94559 0.94647 0.95483 0.88691 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.36 -5.06 10.28 -35.23 -0.36 -5.42 16 3 C 0.05 0.60 2.16 -26.60 -0.06 0.54 16 4 H 0.07 0.77 7.22 -51.93 -0.37 0.40 16 5 C 0.04 0.42 6.47 37.20 0.24 0.66 16 6 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 7 C 0.06 0.52 6.84 37.21 0.25 0.77 16 8 C -0.17 -1.65 5.46 -26.59 -0.15 -1.79 16 9 C 0.15 1.93 2.22 -67.75 -0.15 1.78 16 10 H 0.11 1.60 6.87 -51.93 -0.36 1.24 16 11 N -1.00 -14.57 2.94 -114.42 -0.34 -14.90 16 12 C 0.09 1.10 9.19 59.84 0.55 1.65 16 13 S 2.59 49.97 4.40 -107.50 -0.47 49.49 16 14 O -0.96 -20.82 14.71 -57.54 -0.85 -21.67 16 15 O -0.95 -20.66 14.33 -57.54 -0.82 -21.48 16 16 C -0.59 -11.51 5.11 37.16 0.19 -11.32 16 17 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 18 C -0.16 -4.08 7.80 37.16 0.29 -3.79 16 19 C -0.16 -3.98 7.57 37.16 0.28 -3.70 16 20 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 21 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 22 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 23 N -0.88 -24.10 9.38 55.43 0.52 -23.58 16 24 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.31 7.96 -51.93 -0.41 -0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.72 6.56 -51.93 -0.34 0.38 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.60 6.38 -51.93 -0.33 0.27 16 39 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 40 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 42 H 0.10 2.61 6.05 -51.93 -0.31 2.29 16 43 H 0.03 0.64 5.47 -51.93 -0.28 0.36 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.03 0.64 5.97 -51.93 -0.31 0.33 16 47 H 0.09 2.53 5.95 -51.93 -0.31 2.23 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -32.85 374.67 -8.02 -40.87 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.04 Total: 3.59 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 2.10 Total: -23.71 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.18 Total: -38.48 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -2.41 Total: -52.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 49.97 SS G_CDS: -0.47 Total: 49.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.85 -8.02 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.128 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds