Wall clock time and date at job start Tue Mar 31 2020 18:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00114 * 2 1 4 4 H 1.08999 * 109.56889 * 330.15468 * 3 2 1 5 5 C 1.53083 * 109.52382 * 90.31453 * 3 2 1 6 6 O 1.42907 * 109.41633 * 177.51325 * 5 3 2 7 7 C 1.42893 * 114.09900 * 298.84265 * 6 5 3 8 8 C 1.53099 * 109.41745 * 61.15608 * 7 6 5 9 9 C 1.53179 * 109.52112 * 210.00220 * 3 2 1 10 10 H 1.08999 * 109.61366 * 303.02073 * 9 3 2 11 11 N 1.46494 * 109.54577 * 63.24510 * 9 3 2 12 12 C 1.46496 * 120.00270 * 59.55708 * 11 9 3 13 13 S 1.65605 * 119.99885 * 239.55695 * 11 9 3 14 14 O 1.42098 * 104.27776 * 153.92886 * 13 11 9 15 15 O 1.42101 * 104.27890 * 26.06731 * 13 11 9 16 16 C 1.81403 * 104.44959 * 269.99797 * 13 11 9 17 17 C 1.53001 * 109.47298 * 179.97438 * 16 13 11 18 18 C 1.52998 * 109.46910 * 59.99957 * 17 16 13 19 19 C 1.53003 * 109.47075 * 300.00454 * 17 16 13 20 20 C 1.50692 * 109.47038 * 179.97438 * 17 16 13 21 21 H 1.07996 * 120.00361 * 357.32135 * 20 17 16 22 22 C 1.37876 * 119.99836 * 177.32123 * 20 17 16 23 23 N 1.31518 * 120.00051 * 6.50099 * 22 20 17 24 24 Si 1.86806 * 120.00121 * 186.50128 * 22 20 17 25 25 H 1.48495 * 109.47013 * 84.98802 * 24 22 20 26 26 H 1.48495 * 109.46861 * 324.98990 * 24 22 20 27 27 H 1.48499 * 109.47252 * 204.98988 * 24 22 20 28 28 H 1.09006 * 109.47078 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47191 * 300.00340 * 1 2 3 31 31 H 1.09001 * 109.48533 * 57.53079 * 5 3 2 32 32 H 1.09004 * 109.48447 * 297.49499 * 5 3 2 33 33 H 1.08998 * 109.48201 * 301.17558 * 7 6 5 34 34 H 1.09005 * 109.49342 * 181.14188 * 7 6 5 35 35 H 1.08996 * 109.52366 * 182.48752 * 8 7 6 36 36 H 1.09005 * 109.57279 * 62.32469 * 8 7 6 37 37 H 1.09005 * 109.46820 * 270.00053 * 12 11 9 38 38 H 1.08997 * 109.47335 * 29.99965 * 12 11 9 39 39 H 1.08994 * 109.47678 * 150.00244 * 12 11 9 40 40 H 1.08997 * 109.46860 * 59.99681 * 16 13 11 41 41 H 1.09004 * 109.47078 * 300.00096 * 16 13 11 42 42 H 1.09000 * 109.47346 * 180.02562 * 18 17 16 43 43 H 1.09002 * 109.47765 * 300.00153 * 18 17 16 44 44 H 1.09004 * 109.47095 * 60.00081 * 18 17 16 45 45 H 1.09004 * 109.46489 * 306.77987 * 19 17 16 46 46 H 1.08992 * 109.47480 * 66.77936 * 19 17 16 47 47 H 1.08993 * 109.46657 * 186.78473 * 19 17 16 48 48 H 0.97001 * 119.99624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0013 -0.5111 5 6 2.2256 1.7696 1.4428 6 8 2.8598 3.0502 1.4402 7 6 4.1471 3.0625 0.8202 8 6 4.0091 2.6503 -0.6477 9 6 3.3606 1.2645 -0.7219 10 1 4.0098 0.5320 -0.2423 11 7 3.1556 0.8939 -2.1243 12 6 2.3111 1.7251 -2.9857 13 16 3.8785 -0.4648 -2.7358 14 8 3.0363 -0.8559 -3.8114 15 8 4.0596 -1.3050 -1.6042 16 6 5.4796 0.1163 -3.3599 17 6 6.2522 -1.0617 -3.9570 18 6 5.4467 -1.6694 -5.1070 19 6 6.4798 -2.1219 -2.8777 20 6 7.5820 -0.5788 -4.4760 21 1 7.8315 0.4709 -4.4280 22 6 8.4801 -1.4771 -5.0121 23 7 8.1290 -2.7322 -5.1885 24 14 10.1957 -0.9114 -5.4879 25 1 11.0800 -0.9560 -4.2958 26 1 10.1326 0.4789 -6.0057 27 1 10.7382 -1.8075 -6.5405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.8581 1.0518 1.9651 32 1 1.2629 1.8418 1.9490 33 1 4.8048 2.3616 1.3342 34 1 4.5690 4.0660 0.8778 35 1 4.9952 2.6163 -1.1108 36 1 3.3847 3.3732 -1.1728 37 1 1.2806 1.3740 -2.9321 38 1 2.3598 2.7614 -2.6515 39 1 2.6645 1.6582 -4.0146 40 1 6.0536 0.5489 -2.5405 41 1 5.3174 0.8719 -4.1286 42 1 5.9968 -2.5089 -5.5322 43 1 4.4846 -2.0186 -4.7321 44 1 5.2845 -0.9141 -5.8760 45 1 6.9469 -1.6602 -2.0077 46 1 5.5233 -2.5571 -2.5884 47 1 7.1315 -2.9036 -3.2680 48 1 8.7611 -3.3642 -5.5653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882739836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:05 Heat of formation + Delta-G solvation = -179.579817 kcal Electronic energy + Delta-G solvation = -29993.305601 eV Core-core repulsion = 25982.215902 eV Total energy + Delta-G solvation = -4011.089699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97091 -38.27678 -38.14700 -38.12986 -37.22752 -36.79028 -33.64770 -32.61001 -31.32350 -28.43477 -27.72928 -27.69495 -27.49517 -27.25478 -25.01437 -24.12932 -21.41687 -21.14733 -19.88692 -18.88621 -18.10235 -17.91315 -17.50687 -17.31372 -16.95443 -16.68509 -16.48483 -16.13471 -15.94744 -15.27517 -15.20027 -14.84446 -14.70872 -14.64709 -14.44076 -14.18478 -13.95830 -13.78340 -13.61497 -13.24276 -13.02542 -12.89284 -12.81183 -12.78726 -12.64354 -12.52841 -12.37465 -12.27422 -12.20516 -12.17719 -12.12713 -11.93881 -11.59904 -11.49644 -11.31129 -11.03530 -10.67420 -10.40029 -10.35862 -9.87650 -8.03980 -6.22439 -0.64579 1.44818 1.46277 1.54420 1.77054 2.44208 2.55388 2.95279 3.03694 3.17707 3.24293 3.56585 3.70135 3.84260 3.90779 4.00922 4.06533 4.13670 4.17602 4.34891 4.40628 4.50489 4.52475 4.56312 4.62234 4.69431 4.74449 4.78556 4.81116 4.82979 4.85671 4.90479 4.91279 4.97228 5.04973 5.06287 5.27544 5.35786 5.45669 5.62891 5.63552 5.94003 6.00869 6.09247 6.32562 6.32891 6.82081 7.45740 8.96006 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.003828 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.384625 B = 7313.696312 C = 8056.988346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.400 6.400 3 C 0.050 3.950 4 H 0.088 0.912 5 C 0.045 3.955 6 O -0.384 6.384 7 C 0.055 3.945 8 C -0.163 4.163 9 C 0.139 3.861 10 H 0.089 0.911 11 N -0.992 5.992 12 C 0.083 3.917 13 S 2.605 3.395 14 O -0.991 6.991 15 O -0.984 6.984 16 C -0.585 4.585 17 C 0.069 3.931 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.517 4.517 21 H 0.065 0.935 22 C 0.018 3.982 23 N -0.908 5.908 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.266 1.266 27 H -0.288 1.288 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 14.466 11.193 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.319 6.319 3 C -0.010 4.010 4 H 0.106 0.894 5 C -0.033 4.033 6 O -0.302 6.302 7 C -0.022 4.022 8 C -0.202 4.202 9 C 0.033 3.967 10 H 0.107 0.893 11 N -0.829 5.829 12 C -0.062 4.062 13 S 2.704 3.296 14 O -0.981 6.981 15 O -0.974 6.974 16 C -0.718 4.718 17 C 0.067 3.933 18 C -0.217 4.217 19 C -0.214 4.214 20 C -0.556 4.556 21 H 0.083 0.917 22 C -0.182 4.182 23 N -0.547 5.547 24 Si 0.781 3.219 25 H -0.202 1.202 26 H -0.191 1.191 27 H -0.214 1.214 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.089 0.911 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.667 13.423 11.182 21.579 hybrid contribution 1.257 -0.026 -0.766 1.472 sum -11.409 13.398 10.416 20.449 Atomic orbital electron populations 1.23024 0.79709 1.03603 1.01205 1.88027 1.21349 1.27451 1.95073 1.23211 0.95213 0.85576 0.96982 0.89431 1.23073 0.99657 0.85492 0.95082 1.87934 1.33016 1.29969 1.79304 1.22836 0.84516 1.04228 0.90614 1.22717 1.03266 0.94960 0.99303 1.21254 0.96665 0.98593 0.80234 0.89296 1.57349 1.62715 1.45208 1.17647 1.21680 0.94287 0.96529 0.93680 1.05076 0.76963 0.74077 0.73443 1.93479 1.65862 1.81168 1.57581 1.93502 1.87419 1.65080 1.51411 1.30534 1.19059 1.10128 1.12058 1.17924 0.94423 0.89018 0.91919 1.22227 0.97133 1.02329 0.99966 1.22132 1.00064 1.01352 0.97837 1.21264 0.99871 0.94347 1.40084 0.91689 1.25696 1.01974 0.95121 0.95383 1.69961 1.35862 1.04057 1.44773 0.85622 0.80218 0.78331 0.77777 1.20159 1.19072 1.21408 0.93347 0.89461 0.91739 0.92466 0.86864 0.92351 0.85629 0.88528 0.88375 0.92808 0.87713 0.90774 0.84603 0.84623 0.90908 0.95411 0.94125 0.93893 0.95646 0.91054 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.61 16 2 O -0.40 -10.78 10.28 -148.98 -1.53 -12.32 16 3 C 0.05 1.08 2.16 30.68 0.07 1.15 16 4 H 0.09 1.59 7.22 -2.39 -0.02 1.58 16 5 C 0.04 0.82 6.47 72.01 0.47 1.29 16 6 O -0.38 -6.93 10.77 -148.98 -1.60 -8.53 16 7 C 0.06 0.82 6.84 72.02 0.49 1.31 16 8 C -0.16 -2.69 5.46 30.69 0.17 -2.52 16 9 C 0.14 3.34 2.22 45.11 0.10 3.44 16 10 H 0.09 2.54 6.87 -2.39 -0.02 2.52 16 11 N -0.99 -27.26 2.94 -515.91 -1.52 -28.77 16 12 C 0.08 1.74 9.19 127.77 1.17 2.91 16 13 S 2.61 99.52 4.40 -56.49 -0.25 99.27 16 14 O -0.99 -43.02 14.71 -127.65 -1.88 -44.90 16 15 O -0.98 -43.27 14.33 -127.65 -1.83 -45.10 16 16 C -0.59 -22.36 5.11 71.98 0.37 -21.99 16 17 C 0.07 3.38 0.52 -52.93 -0.03 3.35 16 18 C -0.16 -8.06 7.80 71.98 0.56 -7.50 16 19 C -0.16 -7.88 7.57 71.98 0.55 -7.34 16 20 C -0.52 -26.78 8.01 25.60 0.20 -26.57 16 21 H 0.06 3.20 7.75 -2.91 -0.02 3.18 16 22 C 0.02 0.93 5.09 84.65 0.43 1.37 16 23 N -0.91 -50.51 9.38 21.45 0.20 -50.31 16 24 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 28 H 0.05 0.82 8.09 -2.38 -0.02 0.81 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.64 7.96 -2.39 -0.02 1.62 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.30 6.56 -2.38 -0.02 1.28 16 37 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.10 1.43 6.38 -2.39 -0.02 1.41 16 39 H 0.07 1.58 7.79 -2.39 -0.02 1.56 16 40 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 41 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 42 H 0.07 4.03 6.05 -2.39 -0.01 4.01 16 43 H 0.03 1.36 5.47 -2.39 -0.01 1.35 16 44 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.02 1.24 5.97 -2.39 -0.01 1.23 16 47 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 48 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -71.32 374.67 0.34 -70.99 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.94 Total: 25.35 kcal Atomic # 6 Polarization: -55.26 SS G_CDS: 5.78 Total: -49.49 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.31 Total: -79.08 kcal Atomic # 8 Polarization: -104.00 SS G_CDS: -6.84 Total: -110.84 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 99.52 SS G_CDS: -0.25 Total: 99.27 kcal Total: -71.32 0.34 -70.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.593 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds