Wall clock time and date at job start Tue Mar 31 2020 18:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99798 * 2 1 4 4 H 1.08994 * 109.52434 * 29.87085 * 3 2 1 5 5 C 1.53094 * 109.52016 * 269.68499 * 3 2 1 6 6 O 1.42905 * 109.41461 * 182.48279 * 5 3 2 7 7 C 1.42901 * 114.09504 * 61.16069 * 6 5 3 8 8 C 1.53092 * 109.41731 * 298.84076 * 7 6 5 9 9 C 1.53175 * 109.52352 * 150.00278 * 3 2 1 10 10 H 1.09006 * 109.54108 * 57.01755 * 9 3 2 11 11 N 1.46501 * 109.54385 * 296.75363 * 9 3 2 12 12 C 1.46502 * 119.99635 * 299.99779 * 11 9 3 13 13 S 1.65593 * 120.00346 * 119.99835 * 11 9 3 14 14 O 1.42099 * 104.27903 * 206.07306 * 13 11 9 15 15 O 1.42101 * 104.27633 * 333.92883 * 13 11 9 16 16 C 1.81400 * 104.44855 * 89.99937 * 13 11 9 17 17 C 1.53003 * 109.46824 * 179.97438 * 16 13 11 18 18 C 1.52994 * 109.47483 * 300.00370 * 17 16 13 19 19 C 1.53000 * 109.46944 * 60.00360 * 17 16 13 20 20 C 1.50703 * 109.46636 * 180.02562 * 17 16 13 21 21 H 1.07997 * 120.00400 * 357.69621 * 20 17 16 22 22 C 1.37879 * 119.99520 * 177.69921 * 20 17 16 23 23 N 1.31512 * 120.00442 * 6.58210 * 22 20 17 24 24 Si 1.86800 * 119.99861 * 186.58337 * 22 20 17 25 25 H 1.48499 * 109.47378 * 84.98886 * 24 22 20 26 26 H 1.48497 * 109.47214 * 204.99516 * 24 22 20 27 27 H 1.48511 * 109.47100 * 324.99189 * 24 22 20 28 28 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47324 * 60.00164 * 1 2 3 30 30 H 1.09003 * 109.47117 * 300.00093 * 1 2 3 31 31 H 1.08994 * 109.48403 * 302.47021 * 5 3 2 32 32 H 1.09000 * 109.48198 * 62.50679 * 5 3 2 33 33 H 1.08999 * 109.48177 * 178.85725 * 7 6 5 34 34 H 1.08999 * 109.48187 * 58.82566 * 7 6 5 35 35 H 1.09003 * 109.52045 * 297.70495 * 8 7 6 36 36 H 1.08994 * 109.52389 * 177.51365 * 8 7 6 37 37 H 1.09008 * 109.46756 * 89.99938 * 12 11 9 38 38 H 1.08997 * 109.47360 * 209.99369 * 12 11 9 39 39 H 1.08998 * 109.47376 * 330.00136 * 12 11 9 40 40 H 1.08992 * 109.47444 * 300.00241 * 16 13 11 41 41 H 1.09001 * 109.46661 * 60.00291 * 16 13 11 42 42 H 1.08996 * 109.47142 * 66.66661 * 18 17 16 43 43 H 1.09006 * 109.47030 * 186.67344 * 18 17 16 44 44 H 1.09001 * 109.46874 * 306.66545 * 18 17 16 45 45 H 1.09004 * 109.47357 * 59.99586 * 19 17 16 46 46 H 1.09001 * 109.46997 * 179.97438 * 19 17 16 47 47 H 1.08994 * 109.47137 * 299.99629 * 19 17 16 48 48 H 0.97001 * 120.00312 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 0.5116 5 6 2.2254 1.7696 -1.4429 6 8 2.8595 3.0503 -1.4404 7 6 4.1469 3.0627 -0.8204 8 6 4.0089 2.6505 0.6475 9 6 3.3606 1.2647 0.7218 10 1 4.0091 0.5324 0.2407 11 7 3.1557 0.8940 2.1242 12 6 2.3190 1.7306 2.9882 13 16 3.8697 -0.4705 2.7329 14 8 3.0267 -0.8566 3.8098 15 8 4.0422 -1.3108 1.6000 16 6 5.4762 0.0981 3.3543 17 6 6.2407 -1.0859 3.9498 18 6 5.4326 -1.6879 5.1010 19 6 6.4584 -2.1476 2.8698 20 6 7.5752 -0.6134 4.4666 21 1 7.8661 0.4196 4.3458 22 6 8.4247 -1.5000 5.0938 23 7 8.1303 -2.7813 5.1270 24 14 9.9939 -0.8812 5.8963 25 1 9.6946 -0.4140 7.2737 26 1 10.9888 -1.9823 5.9522 27 1 10.5460 0.2448 5.1008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 2.8580 1.0518 -1.9651 32 1 1.2628 1.8417 -1.9491 33 1 4.5686 4.0661 -0.8781 34 1 4.8047 2.3618 -1.3345 35 1 3.3840 3.3736 1.1716 36 1 4.9950 2.6166 1.1106 37 1 1.2858 1.3871 2.9362 38 1 2.6739 1.6600 4.0164 39 1 2.3747 2.7668 2.6549 40 1 6.0518 0.5273 2.5343 41 1 5.3211 0.8541 4.1241 42 1 4.5194 -2.1354 4.7088 43 1 6.0267 -2.4530 5.6009 44 1 5.1761 -0.9040 5.8137 45 1 7.0342 -1.7188 2.0495 46 1 7.0034 -2.9909 3.2939 47 1 5.4931 -2.4892 2.4964 48 1 8.7278 -3.4050 5.5685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882739837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:08 Heat of formation + Delta-G solvation = -155.923168 kcal Electronic energy + Delta-G solvation = -29990.184987 eV Core-core repulsion = 25980.121117 eV Total energy + Delta-G solvation = -4010.063870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12722 -37.42444 -36.52538 -36.31037 -36.15399 -35.18908 -31.76273 -31.64553 -30.53240 -26.91974 -26.74658 -26.51372 -25.72022 -25.23309 -24.09097 -23.34436 -20.38319 -19.43332 -18.54396 -17.44158 -17.18930 -16.67942 -16.30506 -15.96899 -15.60550 -15.32970 -15.16894 -15.01798 -14.72517 -14.21774 -14.15559 -13.74972 -13.39747 -13.15639 -13.04941 -12.99520 -12.50991 -12.47569 -12.16259 -11.93750 -11.69721 -11.67338 -11.47954 -11.37886 -11.24498 -11.16315 -11.01448 -10.93112 -10.68918 -10.56067 -10.36255 -10.29804 -10.26232 -10.08529 -9.66329 -9.56717 -9.49370 -8.93008 -8.62725 -8.38453 -6.04504 -4.16184 0.85321 3.05966 3.25307 3.32421 3.33623 3.35256 3.80344 4.33792 4.42335 4.46264 4.55156 4.62153 4.71207 4.82172 4.91370 4.98235 5.08467 5.14298 5.20277 5.23426 5.35282 5.43297 5.45542 5.49473 5.55066 5.57778 5.64461 5.68658 5.74265 5.78027 5.86472 6.16322 6.37739 6.66459 6.68452 6.76840 6.78857 6.91758 7.04861 7.12569 7.30806 7.48414 7.66856 7.97078 8.09548 8.33080 8.82037 9.48915 10.96589 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003793 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.784215 B = 7379.489231 C = 8073.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.051 3.949 4 H 0.073 0.927 5 C 0.041 3.959 6 O -0.378 6.378 7 C 0.058 3.942 8 C -0.169 4.169 9 C 0.150 3.850 10 H 0.111 0.889 11 N -1.001 6.001 12 C 0.093 3.907 13 S 2.593 3.407 14 O -0.961 6.961 15 O -0.952 6.952 16 C -0.585 4.585 17 C 0.082 3.918 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.502 4.502 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.882 5.882 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.026 0.974 43 H 0.094 0.906 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.027 0.973 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 11.672 -10.255 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.282 6.282 3 C -0.009 4.009 4 H 0.091 0.909 5 C -0.037 4.037 6 O -0.296 6.296 7 C -0.019 4.019 8 C -0.208 4.208 9 C 0.043 3.957 10 H 0.129 0.871 11 N -0.835 5.835 12 C -0.052 4.052 13 S 2.692 3.308 14 O -0.952 6.952 15 O -0.943 6.943 16 C -0.718 4.718 17 C 0.080 3.920 18 C -0.218 4.218 19 C -0.221 4.221 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.137 4.137 23 N -0.520 5.520 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.045 0.955 43 H 0.112 0.888 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.116 0.884 47 H 0.046 0.954 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.442 10.626 -10.255 19.310 hybrid contribution 1.167 0.902 0.775 1.666 sum -11.275 11.528 -9.480 18.705 Atomic orbital electron populations 1.22844 0.81288 1.03042 0.99694 1.88072 1.19376 1.25949 1.94799 1.23118 0.95815 0.85985 0.96032 0.90916 1.23089 0.98893 0.85654 0.96063 1.87937 1.32414 1.30107 1.79178 1.22668 0.84993 1.02817 0.91409 1.22703 1.02919 0.96825 0.98342 1.20974 0.95794 0.97360 0.81595 0.87080 1.57765 1.63586 1.45614 1.16579 1.21380 0.94939 0.94992 0.93903 1.05804 0.77282 0.73352 0.74379 1.93532 1.65195 1.80070 1.56371 1.93544 1.87093 1.63027 1.50602 1.30627 1.18897 1.11448 1.10863 1.17928 0.94245 0.87561 0.92300 1.22203 0.97745 1.02012 0.99830 1.22304 0.99898 1.02339 0.97593 1.20926 0.99992 0.95680 1.37575 0.92342 1.24938 0.97975 0.94791 0.95999 1.69811 1.37594 1.01546 1.43036 0.86571 0.82811 0.78451 0.79920 1.20545 1.21171 1.20016 0.89380 0.94173 0.94004 0.91659 0.88596 0.88052 0.92274 0.90024 0.89166 0.93001 0.90777 0.91375 0.86628 0.86596 0.95537 0.88755 0.94664 0.94546 0.88426 0.95435 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.36 -5.07 10.28 -35.23 -0.36 -5.43 16 3 C 0.05 0.60 2.17 -26.59 -0.06 0.54 16 4 H 0.07 0.77 7.23 -51.93 -0.38 0.40 16 5 C 0.04 0.42 6.47 37.21 0.24 0.66 16 6 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 7 C 0.06 0.52 6.84 37.21 0.25 0.77 16 8 C -0.17 -1.65 5.45 -26.59 -0.14 -1.79 16 9 C 0.15 1.93 2.22 -67.75 -0.15 1.78 16 10 H 0.11 1.60 6.89 -51.93 -0.36 1.24 16 11 N -1.00 -14.56 2.94 -114.41 -0.34 -14.90 16 12 C 0.09 1.10 9.21 59.85 0.55 1.65 16 13 S 2.59 49.97 4.40 -107.50 -0.47 49.49 16 14 O -0.96 -20.80 14.85 -57.54 -0.85 -21.66 16 15 O -0.95 -20.67 14.20 -57.54 -0.82 -21.49 16 16 C -0.59 -11.52 5.12 37.16 0.19 -11.33 16 17 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 18 C -0.16 -3.98 7.58 37.15 0.28 -3.70 16 19 C -0.16 -4.08 7.80 37.16 0.29 -3.79 16 20 C -0.50 -13.17 8.01 -34.44 -0.28 -13.44 16 21 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 22 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 23 N -0.88 -24.10 9.39 55.43 0.52 -23.58 16 24 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.31 7.96 -51.93 -0.41 -0.10 16 30 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.72 6.54 -51.93 -0.34 0.38 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 39 H 0.07 0.60 6.36 -51.93 -0.33 0.27 16 40 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 43 H 0.09 2.52 5.99 -51.93 -0.31 2.21 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 2.62 6.01 -51.93 -0.31 2.31 16 47 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 48 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -32.85 374.66 -8.02 -40.87 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.04 Total: 3.59 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 2.10 Total: -23.72 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.18 Total: -38.48 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.41 Total: -52.91 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 49.97 SS G_CDS: -0.47 Total: 49.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.85 -8.02 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.053 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds