Wall clock time and date at job start Tue Mar 31 2020 18:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99798 * 2 1 4 4 H 1.08994 * 109.52434 * 29.87085 * 3 2 1 5 5 C 1.53094 * 109.52016 * 269.68499 * 3 2 1 6 6 O 1.42905 * 109.41461 * 182.48279 * 5 3 2 7 7 C 1.42901 * 114.09504 * 61.16069 * 6 5 3 8 8 C 1.53092 * 109.41731 * 298.84076 * 7 6 5 9 9 C 1.53175 * 109.52352 * 150.00278 * 3 2 1 10 10 H 1.09006 * 109.54108 * 57.01755 * 9 3 2 11 11 N 1.46501 * 109.54385 * 296.75363 * 9 3 2 12 12 C 1.46502 * 119.99635 * 299.99779 * 11 9 3 13 13 S 1.65593 * 120.00346 * 119.99835 * 11 9 3 14 14 O 1.42099 * 104.27903 * 206.07306 * 13 11 9 15 15 O 1.42101 * 104.27633 * 333.92883 * 13 11 9 16 16 C 1.81400 * 104.44855 * 89.99937 * 13 11 9 17 17 C 1.53003 * 109.46824 * 179.97438 * 16 13 11 18 18 C 1.52994 * 109.47483 * 300.00370 * 17 16 13 19 19 C 1.53000 * 109.46944 * 60.00360 * 17 16 13 20 20 C 1.50703 * 109.46636 * 180.02562 * 17 16 13 21 21 H 1.07997 * 120.00400 * 357.69621 * 20 17 16 22 22 C 1.37879 * 119.99520 * 177.69921 * 20 17 16 23 23 N 1.31512 * 120.00442 * 6.58210 * 22 20 17 24 24 Si 1.86800 * 119.99861 * 186.58337 * 22 20 17 25 25 H 1.48499 * 109.47378 * 84.98886 * 24 22 20 26 26 H 1.48497 * 109.47214 * 204.99516 * 24 22 20 27 27 H 1.48511 * 109.47100 * 324.99189 * 24 22 20 28 28 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47324 * 60.00164 * 1 2 3 30 30 H 1.09003 * 109.47117 * 300.00093 * 1 2 3 31 31 H 1.08994 * 109.48403 * 302.47021 * 5 3 2 32 32 H 1.09000 * 109.48198 * 62.50679 * 5 3 2 33 33 H 1.08999 * 109.48177 * 178.85725 * 7 6 5 34 34 H 1.08999 * 109.48187 * 58.82566 * 7 6 5 35 35 H 1.09003 * 109.52045 * 297.70495 * 8 7 6 36 36 H 1.08994 * 109.52389 * 177.51365 * 8 7 6 37 37 H 1.09008 * 109.46756 * 89.99938 * 12 11 9 38 38 H 1.08997 * 109.47360 * 209.99369 * 12 11 9 39 39 H 1.08998 * 109.47376 * 330.00136 * 12 11 9 40 40 H 1.08992 * 109.47444 * 300.00241 * 16 13 11 41 41 H 1.09001 * 109.46661 * 60.00291 * 16 13 11 42 42 H 1.08996 * 109.47142 * 66.66661 * 18 17 16 43 43 H 1.09006 * 109.47030 * 186.67344 * 18 17 16 44 44 H 1.09001 * 109.46874 * 306.66545 * 18 17 16 45 45 H 1.09004 * 109.47357 * 59.99586 * 19 17 16 46 46 H 1.09001 * 109.46997 * 179.97438 * 19 17 16 47 47 H 1.08994 * 109.47137 * 299.99629 * 19 17 16 48 48 H 0.97001 * 120.00312 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 0.5116 5 6 2.2254 1.7696 -1.4429 6 8 2.8595 3.0503 -1.4404 7 6 4.1469 3.0627 -0.8204 8 6 4.0089 2.6505 0.6475 9 6 3.3606 1.2647 0.7218 10 1 4.0091 0.5324 0.2407 11 7 3.1557 0.8940 2.1242 12 6 2.3190 1.7306 2.9882 13 16 3.8697 -0.4705 2.7329 14 8 3.0267 -0.8566 3.8098 15 8 4.0422 -1.3108 1.6000 16 6 5.4762 0.0981 3.3543 17 6 6.2407 -1.0859 3.9498 18 6 5.4326 -1.6879 5.1010 19 6 6.4584 -2.1476 2.8698 20 6 7.5752 -0.6134 4.4666 21 1 7.8661 0.4196 4.3458 22 6 8.4247 -1.5000 5.0938 23 7 8.1303 -2.7813 5.1270 24 14 9.9939 -0.8812 5.8963 25 1 9.6946 -0.4140 7.2737 26 1 10.9888 -1.9823 5.9522 27 1 10.5460 0.2448 5.1008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 2.8580 1.0518 -1.9651 32 1 1.2628 1.8417 -1.9491 33 1 4.5686 4.0661 -0.8781 34 1 4.8047 2.3618 -1.3345 35 1 3.3840 3.3736 1.1716 36 1 4.9950 2.6166 1.1106 37 1 1.2858 1.3871 2.9362 38 1 2.6739 1.6600 4.0164 39 1 2.3747 2.7668 2.6549 40 1 6.0518 0.5273 2.5343 41 1 5.3211 0.8541 4.1241 42 1 4.5194 -2.1354 4.7088 43 1 6.0267 -2.4530 5.6009 44 1 5.1761 -0.9040 5.8137 45 1 7.0342 -1.7188 2.0495 46 1 7.0034 -2.9909 3.2939 47 1 5.4931 -2.4892 2.4964 48 1 8.7278 -3.4050 5.5685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882739837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:07 Heat of formation + Delta-G solvation = -179.512505 kcal Electronic energy + Delta-G solvation = -29991.207897 eV Core-core repulsion = 25980.121117 eV Total energy + Delta-G solvation = -4011.086780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97088 -38.27643 -38.14965 -38.12457 -37.22715 -36.78931 -33.64818 -32.60954 -31.32395 -28.43573 -27.72526 -27.69786 -27.49462 -27.25379 -25.01464 -24.12992 -21.41652 -21.14702 -19.88624 -18.88477 -18.10227 -17.91306 -17.50784 -17.31317 -16.95455 -16.68440 -16.48218 -16.13440 -15.95022 -15.27587 -15.19731 -14.84557 -14.70059 -14.65429 -14.44056 -14.18220 -13.95299 -13.79612 -13.61914 -13.21347 -13.04112 -12.88125 -12.81579 -12.79561 -12.64759 -12.53078 -12.37452 -12.27399 -12.21186 -12.17066 -12.12022 -11.93647 -11.59633 -11.49754 -11.31225 -11.03576 -10.67337 -10.40196 -10.35950 -9.87542 -8.03890 -6.22415 -0.64462 1.44777 1.46255 1.54395 1.77123 2.44201 2.55412 2.95513 3.03650 3.17764 3.24312 3.56637 3.69995 3.84242 3.90727 4.00982 4.06272 4.13631 4.17864 4.34893 4.40594 4.50477 4.52439 4.56312 4.62296 4.69501 4.74457 4.78513 4.81120 4.82943 4.85664 4.90439 4.91467 4.97306 5.04813 5.06392 5.27553 5.35840 5.45663 5.62808 5.63571 5.93850 6.00820 6.09405 6.32558 6.32927 6.82085 7.45759 8.96029 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.003793 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.784215 B = 7379.489231 C = 8073.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.400 6.400 3 C 0.050 3.950 4 H 0.088 0.912 5 C 0.045 3.955 6 O -0.384 6.384 7 C 0.055 3.945 8 C -0.163 4.163 9 C 0.139 3.861 10 H 0.089 0.911 11 N -0.992 5.992 12 C 0.083 3.917 13 S 2.605 3.395 14 O -0.991 6.991 15 O -0.984 6.984 16 C -0.586 4.586 17 C 0.069 3.931 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.517 4.517 21 H 0.065 0.935 22 C 0.018 3.982 23 N -0.908 5.908 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.266 1.266 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.028 0.972 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 14.635 -10.772 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.319 6.319 3 C -0.010 4.010 4 H 0.106 0.894 5 C -0.033 4.033 6 O -0.302 6.302 7 C -0.022 4.022 8 C -0.202 4.202 9 C 0.033 3.967 10 H 0.107 0.893 11 N -0.829 5.829 12 C -0.062 4.062 13 S 2.704 3.296 14 O -0.981 6.981 15 O -0.974 6.974 16 C -0.718 4.718 17 C 0.067 3.933 18 C -0.214 4.214 19 C -0.217 4.217 20 C -0.556 4.556 21 H 0.083 0.917 22 C -0.182 4.182 23 N -0.546 5.546 24 Si 0.781 3.219 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.191 1.191 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.046 0.954 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.771 13.593 -10.771 21.538 hybrid contribution 1.203 -0.012 0.890 1.496 sum -11.569 13.581 -9.881 20.394 Atomic orbital electron populations 1.23024 0.79717 1.03598 1.01203 1.88029 1.21342 1.27454 1.95072 1.23217 0.95231 0.85573 0.96981 0.89437 1.23072 0.99656 0.85491 0.95081 1.87936 1.33016 1.29961 1.79308 1.22837 0.84514 1.04227 0.90626 1.22713 1.03259 0.94943 0.99302 1.21251 0.96651 0.98599 0.80238 0.89325 1.57350 1.63227 1.44754 1.17592 1.21686 0.94431 0.96437 0.93632 1.05073 0.76977 0.74034 0.73466 1.93485 1.65739 1.81319 1.57539 1.93497 1.87446 1.65033 1.51426 1.30533 1.19150 1.10055 1.12050 1.17926 0.94454 0.88975 0.91933 1.22132 0.97342 1.01637 1.00251 1.22229 0.99584 1.01979 0.97891 1.21266 1.00799 0.95966 1.37547 0.91691 1.25694 1.00954 0.94929 0.96594 1.69957 1.38562 1.02519 1.43611 0.85623 0.79297 0.77967 0.79060 1.20187 1.21400 1.19052 0.89470 0.91728 0.93356 0.92471 0.86866 0.85623 0.92365 0.88354 0.88525 0.92809 0.90745 0.87705 0.84712 0.84527 0.95673 0.91112 0.93844 0.94182 0.90852 0.95361 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -10.82 10.28 -148.98 -1.53 -12.35 16 3 C 0.05 1.08 2.17 30.68 0.07 1.15 16 4 H 0.09 1.60 7.23 -2.39 -0.02 1.58 16 5 C 0.04 0.82 6.47 72.01 0.47 1.29 16 6 O -0.38 -6.94 10.77 -148.98 -1.60 -8.55 16 7 C 0.05 0.82 6.84 72.01 0.49 1.31 16 8 C -0.16 -2.69 5.45 30.69 0.17 -2.52 16 9 C 0.14 3.35 2.22 45.11 0.10 3.45 16 10 H 0.09 2.54 6.89 -2.38 -0.02 2.52 16 11 N -0.99 -27.25 2.94 -515.87 -1.52 -28.77 16 12 C 0.08 1.73 9.21 127.77 1.18 2.91 16 13 S 2.61 99.53 4.40 -56.49 -0.25 99.28 16 14 O -0.99 -42.91 14.85 -127.65 -1.90 -44.80 16 15 O -0.98 -43.37 14.20 -127.65 -1.81 -45.18 16 16 C -0.59 -22.37 5.12 71.98 0.37 -22.01 16 17 C 0.07 3.37 0.52 -52.93 -0.03 3.35 16 18 C -0.16 -7.86 7.58 71.98 0.55 -7.31 16 19 C -0.16 -8.09 7.80 71.98 0.56 -7.53 16 20 C -0.52 -26.79 8.01 25.60 0.20 -26.59 16 21 H 0.06 3.20 7.75 -2.91 -0.02 3.18 16 22 C 0.02 0.94 5.09 84.66 0.43 1.37 16 23 N -0.91 -50.51 9.39 21.45 0.20 -50.31 16 24 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.06 0.87 7.96 -2.39 -0.02 0.86 16 30 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.65 7.96 -2.39 -0.02 1.63 16 33 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.30 6.54 -2.39 -0.02 1.28 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.07 1.57 7.79 -2.39 -0.02 1.55 16 39 H 0.10 1.42 6.36 -2.39 -0.02 1.41 16 40 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 41 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 42 H 0.02 1.23 5.96 -2.39 -0.01 1.21 16 43 H 0.07 3.88 5.99 -2.38 -0.01 3.87 16 44 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.07 4.07 6.01 -2.39 -0.01 4.05 16 47 H 0.03 1.39 5.46 -2.39 -0.01 1.38 16 48 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -71.34 374.66 0.34 -71.01 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.94 Total: 25.37 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 5.78 Total: -49.51 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.31 Total: -79.08 kcal Atomic # 8 Polarization: -104.04 SS G_CDS: -6.84 Total: -110.89 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 99.53 SS G_CDS: -0.25 Total: 99.28 kcal Total: -71.34 0.34 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882739837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.506 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds