Wall clock time and date at job start Tue Mar 31 2020 18:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 C 1.50695 * 109.47232 * 240.00058 * 2 1 3 5 5 H 1.08004 * 120.00224 * 240.00053 * 4 2 1 6 6 C 1.37878 * 120.00309 * 60.00013 * 4 2 1 7 7 N 1.31517 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00153 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47340 * 60.00314 * 8 6 4 10 10 H 1.48510 * 109.46797 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47288 * 299.99796 * 8 6 4 12 12 C 1.52996 * 109.47250 * 119.99982 * 2 1 3 13 13 S 1.81407 * 109.47391 * 300.00136 * 12 2 1 14 14 O 1.42100 * 110.54031 * 68.36960 * 13 12 2 15 15 O 1.42098 * 110.53856 * 291.62441 * 13 12 2 16 16 N 1.65594 * 104.45216 * 179.97438 * 13 12 2 17 17 C 1.46493 * 120.00278 * 64.99876 * 16 13 12 18 18 H 1.09004 * 109.47374 * 335.00019 * 17 16 13 19 19 C 1.52998 * 109.47256 * 95.00057 * 17 16 13 20 20 O 1.42896 * 109.47177 * 65.00160 * 19 17 16 21 21 C 1.52999 * 109.47315 * 214.99935 * 17 16 13 22 22 C 1.53005 * 109.47010 * 65.00142 * 21 17 16 23 23 H 1.09002 * 110.33140 * 305.69926 * 22 21 17 24 24 C 1.54481 * 110.37412 * 183.45082 * 22 21 17 25 25 C 1.54503 * 104.06445 * 217.08080 * 24 22 21 26 26 C 1.54482 * 104.06349 * 359.97438 * 25 24 22 27 27 O 1.44428 * 110.46595 * 68.01282 * 22 21 17 28 28 H 1.08997 * 109.46959 * 299.99737 * 1 2 3 29 29 H 1.08998 * 109.46789 * 59.99689 * 1 2 3 30 30 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47355 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47486 * 299.99885 * 3 2 1 33 33 H 1.09009 * 109.47360 * 60.00180 * 3 2 1 34 34 H 0.96998 * 119.99967 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47613 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47312 * 59.99599 * 12 2 1 37 37 H 0.97004 * 119.99506 * 244.99749 * 16 13 12 38 38 H 1.09000 * 109.47361 * 185.00641 * 19 17 16 39 39 H 1.09005 * 109.47200 * 304.99840 * 19 17 16 40 40 H 0.96705 * 113.99903 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47217 * 304.99937 * 21 17 16 42 42 H 1.09002 * 109.47089 * 184.99454 * 21 17 16 43 43 H 1.09007 * 110.50806 * 335.72406 * 24 22 21 44 44 H 1.08993 * 110.51288 * 98.42843 * 24 22 21 45 45 H 1.08994 * 110.51469 * 118.64075 * 25 24 22 46 46 H 1.09002 * 110.51162 * 241.21807 * 25 24 22 47 47 H 1.09000 * 110.37168 * 142.80761 * 26 25 24 48 48 H 1.08998 * 110.37438 * 265.04419 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8260 -0.4205 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7408 3.9936 17 6 3.5013 -0.7982 4.2060 18 1 4.0145 -0.6165 3.2617 19 6 3.9104 0.2697 5.2224 20 8 3.3299 -0.0341 6.4923 21 6 3.8845 -2.1810 4.7369 22 6 3.5899 -3.2368 3.6694 23 1 2.5519 -3.1669 3.3440 24 6 3.8883 -4.6510 4.2149 25 6 4.4799 -5.4039 3.0024 26 6 4.4683 -4.3558 1.8675 27 8 4.4813 -3.0796 2.5440 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8901 34 1 0.7090 1.1614 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2493 37 1 1.4557 -1.2151 4.5929 38 1 4.9964 0.2869 5.3141 39 1 3.5588 1.2451 4.8861 40 1 3.5472 0.6029 7.1867 41 1 3.3048 -2.3994 5.6337 42 1 4.9473 -2.1956 4.9787 43 1 4.6152 -4.6020 5.0258 44 1 2.9702 -5.1318 4.5523 45 1 5.4991 -5.7272 3.2137 46 1 3.8555 -6.2585 2.7417 47 1 5.3553 -4.4628 1.2431 48 1 3.5660 -4.4591 1.2648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885525342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:44 Heat of formation + Delta-G solvation = -205.147497 kcal Electronic energy + Delta-G solvation = -29804.680471 eV Core-core repulsion = 25792.482075 eV Total energy + Delta-G solvation = -4012.198397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47430 -38.67224 -38.11900 -38.00596 -36.87622 -35.98839 -33.62462 -33.01565 -32.13312 -29.50415 -28.30531 -27.69224 -27.23495 -26.42677 -23.24435 -21.96807 -21.81671 -21.37892 -20.31043 -18.96047 -18.14511 -17.85002 -17.48299 -17.20030 -16.88985 -16.60848 -16.52340 -16.38124 -15.84443 -15.32802 -15.00544 -14.81091 -14.61108 -14.45270 -14.40759 -14.17263 -13.83589 -13.37957 -13.10535 -13.07911 -12.97362 -12.86158 -12.79917 -12.60331 -12.54888 -12.50063 -12.31402 -12.18104 -12.13843 -12.00456 -11.92544 -11.75774 -11.55924 -11.43549 -11.33076 -10.81040 -10.67304 -10.62357 -10.40083 -10.25996 -8.01584 -6.19633 -0.59341 1.45155 1.45482 1.52830 1.90071 2.45012 2.85044 3.05002 3.20350 3.32652 3.43337 3.53990 3.78061 3.97734 4.07491 4.11299 4.13477 4.17019 4.29617 4.37492 4.43661 4.54604 4.60243 4.62913 4.69535 4.82623 4.86696 4.87450 4.92773 4.97023 5.01476 5.02175 5.07629 5.08709 5.21145 5.27802 5.33614 5.39584 5.51198 5.65492 5.97423 5.99638 6.12163 6.17152 6.35795 6.84222 6.95877 7.48041 8.98278 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005032 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.006729 B = 5563.506640 C = 7396.971025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.072 3.928 3 C -0.158 4.158 4 C -0.513 4.513 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.272 1.272 12 C -0.578 4.578 13 S 2.612 3.388 14 O -0.995 6.995 15 O -0.989 6.989 16 N -1.101 6.101 17 C 0.147 3.853 18 H 0.093 0.907 19 C 0.058 3.942 20 O -0.576 6.576 21 C -0.100 4.100 22 C 0.057 3.943 23 H 0.063 0.937 24 C -0.146 4.146 25 C -0.150 4.150 26 C 0.033 3.967 27 O -0.391 6.391 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.394 0.606 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 -10.354 16.995 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 C -0.216 4.216 4 C -0.552 4.552 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.710 4.710 13 S 2.709 3.291 14 O -0.986 6.986 15 O -0.978 6.978 16 N -0.862 5.862 17 C 0.040 3.960 18 H 0.111 0.889 19 C -0.021 4.021 20 O -0.384 6.384 21 C -0.138 4.138 22 C 0.000 4.000 23 H 0.081 0.919 24 C -0.183 4.183 25 C -0.187 4.187 26 C -0.044 4.044 27 O -0.310 6.310 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.259 0.741 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.244 0.756 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.366 -9.667 16.467 20.848 hybrid contribution 0.242 -0.465 -1.000 1.129 sum 8.609 -10.133 15.467 20.397 Atomic orbital electron populations 1.22199 0.97854 1.00370 1.01249 1.17896 0.92180 0.92121 0.90848 1.22188 0.99746 0.98346 1.01296 1.21213 1.31491 1.12176 0.90337 0.92142 1.25659 0.95208 0.95663 1.01577 1.69936 1.37233 1.23684 1.23852 0.85693 0.78730 0.78755 0.78918 1.19721 1.21277 1.19762 1.30394 1.12214 1.12858 1.15569 1.04785 0.73451 0.75052 0.75834 1.93498 1.31633 1.87137 1.86300 1.93493 1.78342 1.40036 1.85973 1.55379 1.14782 1.70530 1.45494 1.21075 0.79216 0.96908 0.98770 0.88899 1.22713 0.97893 0.97167 0.84377 1.86375 1.76743 1.55133 1.20137 1.21800 1.03895 0.90664 0.97476 1.23263 0.93910 0.95842 0.87017 0.91911 1.22979 1.02586 0.94048 0.98730 1.22924 1.02832 0.98519 0.94470 1.23539 1.02231 0.82922 0.95685 1.89124 1.66221 1.33662 1.42036 0.95113 0.90956 0.94249 0.94205 0.91032 0.94949 0.92949 0.85076 0.85244 0.74135 0.90344 0.93875 0.75627 0.87905 0.88587 0.89340 0.89480 0.89788 0.89657 0.88719 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 2 C 0.07 3.53 0.52 -52.93 -0.03 3.50 16 3 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 4 C -0.51 -27.10 8.01 25.60 0.21 -26.90 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 0.97 5.15 84.65 0.44 1.41 16 7 N -0.91 -50.80 9.35 21.45 0.20 -50.60 16 8 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C -0.58 -22.87 4.90 71.98 0.35 -22.52 16 13 S 2.61 98.03 4.42 -56.49 -0.25 97.78 16 14 O -1.00 -42.78 15.70 -127.65 -2.00 -44.79 16 15 O -0.99 -41.61 14.68 -127.65 -1.87 -43.48 16 16 N -1.10 -29.91 4.70 -169.40 -0.80 -30.70 16 17 C 0.15 3.45 2.44 44.99 0.11 3.56 16 18 H 0.09 2.36 6.86 -2.39 -0.02 2.35 16 19 C 0.06 1.22 6.88 71.98 0.50 1.72 16 20 O -0.58 -10.48 12.83 -148.98 -1.91 -12.39 16 21 C -0.10 -1.80 4.17 30.60 0.13 -1.67 16 22 C 0.06 1.16 3.18 31.10 0.10 1.25 16 23 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 24 C -0.15 -2.16 6.63 31.61 0.21 -1.95 16 25 C -0.15 -2.26 7.09 31.61 0.22 -2.04 16 26 C 0.03 0.70 7.63 72.49 0.55 1.25 16 27 O -0.39 -9.83 10.99 -148.98 -1.64 -11.46 16 28 H 0.03 1.50 5.46 -2.39 -0.01 1.48 16 29 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 33 H 0.03 1.56 5.46 -2.38 -0.01 1.55 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.13 4.85 7.44 -2.39 -0.02 4.83 16 36 H 0.13 4.70 8.14 -2.39 -0.02 4.69 16 37 H 0.42 9.95 8.80 -96.75 -0.85 9.10 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 1.11 7.37 -2.38 -0.02 1.09 16 40 H 0.39 3.90 9.12 -74.05 -0.68 3.23 16 41 H 0.10 1.64 7.73 -2.39 -0.02 1.62 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.09 7.87 -2.38 -0.02 1.07 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.53 379.04 -2.90 -73.42 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.56 Total: 35.03 kcal Atomic # 6 Polarization: -61.25 SS G_CDS: 3.90 Total: -57.35 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -0.60 Total: -81.31 kcal Atomic # 8 Polarization: -104.70 SS G_CDS: -7.43 Total: -112.12 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 98.03 SS G_CDS: -0.25 Total: 97.78 kcal Total: -70.53 -2.90 -73.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885525342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.724 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds