Wall clock time and date at job start Tue Mar 31 2020 18:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 C 1.50699 * 109.47081 * 239.99480 * 2 1 3 5 5 H 1.07995 * 119.99927 * 240.83300 * 4 2 1 6 6 C 1.37876 * 119.99667 * 60.83975 * 4 2 1 7 7 N 1.31514 * 119.99540 * 194.57523 * 6 4 2 8 8 Si 1.86799 * 120.00245 * 14.57570 * 6 4 2 9 9 H 1.48507 * 109.47026 * 84.45598 * 8 6 4 10 10 H 1.48505 * 109.47025 * 204.45335 * 8 6 4 11 11 H 1.48495 * 109.46984 * 324.45204 * 8 6 4 12 12 C 1.53006 * 109.46853 * 119.99273 * 2 1 3 13 13 S 1.81390 * 109.47465 * 300.00396 * 12 2 1 14 14 O 1.42097 * 110.54718 * 68.37206 * 13 12 2 15 15 O 1.42104 * 110.54249 * 291.62277 * 13 12 2 16 16 N 1.65598 * 104.45071 * 179.97438 * 13 12 2 17 17 C 1.46505 * 120.00120 * 65.00084 * 16 13 12 18 18 H 1.08997 * 109.46708 * 24.99714 * 17 16 13 19 19 C 1.53004 * 109.46720 * 265.00277 * 17 16 13 20 20 O 1.42901 * 109.46807 * 294.99693 * 19 17 16 21 21 C 1.52998 * 109.47263 * 145.00056 * 17 16 13 22 22 C 1.52997 * 109.47191 * 294.99863 * 21 17 16 23 23 H 1.09001 * 109.87162 * 54.29948 * 22 21 17 24 24 C 1.54099 * 109.87700 * 175.30722 * 22 21 17 25 25 C 1.54811 * 104.18643 * 121.45497 * 24 22 21 26 26 C 1.54998 * 102.09452 * 20.87817 * 25 24 22 27 27 O 1.43747 * 109.87425 * 293.29372 * 22 21 17 28 28 H 1.09001 * 109.47165 * 310.23647 * 1 2 3 29 29 H 1.09001 * 109.46767 * 70.23465 * 1 2 3 30 30 H 1.08996 * 109.47151 * 190.23465 * 1 2 3 31 31 H 1.09005 * 109.47144 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.46909 * 299.99512 * 3 2 1 33 33 H 1.08998 * 109.47418 * 59.99679 * 3 2 1 34 34 H 0.97003 * 120.00032 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46845 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.46578 * 60.00581 * 12 2 1 37 37 H 0.96999 * 120.00238 * 244.99536 * 16 13 12 38 38 H 1.09002 * 109.47202 * 54.99517 * 19 17 16 39 39 H 1.09000 * 109.47198 * 175.00116 * 19 17 16 40 40 H 0.96702 * 114.00035 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46964 * 174.99776 * 21 17 16 42 42 H 1.08995 * 109.47132 * 55.00070 * 21 17 16 43 43 H 1.09000 * 110.48249 * 240.12614 * 24 22 21 44 44 H 1.08997 * 110.48840 * 2.77927 * 24 22 21 45 45 H 1.09000 * 110.90920 * 139.07253 * 25 24 22 46 46 H 1.08999 * 110.90441 * 262.64900 * 25 24 22 47 47 H 1.09004 * 110.62028 * 81.47593 * 26 25 24 48 48 H 1.09003 * 110.62031 * 204.32224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6421 -1.5963 -1.1313 6 6 1.7136 -0.2295 -2.4826 7 7 1.8970 -0.9849 -3.5434 8 14 1.0213 1.4950 -2.6723 9 1 2.1372 2.4735 -2.7241 10 1 0.2329 1.5765 -3.9282 11 1 0.1434 1.8060 -1.5157 12 6 2.0400 -0.7211 1.2494 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0181 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5013 -0.7979 4.2062 18 1 3.9676 0.0860 3.7709 19 6 4.0654 -2.0534 3.5381 20 8 3.5419 -3.2142 4.1867 21 6 3.7952 -0.8429 5.7070 22 6 3.3427 0.4672 6.3548 23 1 2.2960 0.6563 6.1164 24 6 3.5259 0.3869 7.8828 25 6 4.4770 1.5628 8.2132 26 6 4.2970 2.4828 6.9789 27 8 4.1559 1.5535 5.8803 28 1 -0.3633 0.6638 0.7845 29 1 -0.3633 0.3475 -0.9672 30 1 -0.3633 -1.0113 0.1826 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6731 -0.6464 -4.4244 35 1 3.1300 -0.7215 1.2492 36 1 1.6767 -1.7488 1.2494 37 1 1.4557 -1.2149 4.5931 38 1 3.7795 -2.0650 2.4863 39 1 5.1524 -2.0511 3.6192 40 1 3.8580 -4.0489 3.8146 41 1 4.8658 -0.9749 5.8637 42 1 3.2565 -1.6762 6.1579 43 1 2.5692 0.5161 8.3889 44 1 3.9817 -0.5628 8.1629 45 1 4.1650 2.0708 9.1257 46 1 5.5078 1.2181 8.2950 47 1 3.3987 3.0917 7.0817 48 1 5.1741 3.1150 6.8402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885525345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:47 Heat of formation + Delta-G solvation = -188.345017 kcal Electronic energy + Delta-G solvation = -29482.272034 eV Core-core repulsion = 25470.802247 eV Total energy + Delta-G solvation = -4011.469787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50881 -38.66093 -38.51177 -38.06098 -36.93555 -35.93132 -34.05252 -33.07935 -32.13305 -29.56096 -29.01498 -28.16790 -27.09302 -26.36048 -23.25062 -22.07108 -21.79191 -21.63552 -20.33221 -19.07717 -18.17164 -18.03526 -17.65722 -17.30612 -17.14208 -16.82644 -16.55833 -16.24965 -15.89936 -15.48822 -15.05402 -15.01922 -14.79452 -14.59887 -14.46012 -14.31796 -14.17105 -13.88214 -13.42276 -13.23503 -13.06892 -13.04635 -12.75366 -12.66850 -12.60322 -12.59670 -12.50293 -12.40740 -12.01315 -11.90412 -11.86917 -11.81617 -11.70779 -11.50698 -10.97654 -10.80023 -10.67360 -10.64546 -10.50530 -10.23838 -8.35681 -6.34684 -0.64738 1.29335 1.34898 1.42094 1.83895 2.28937 2.78795 2.98781 3.02626 3.28514 3.43343 3.55970 3.70654 3.73381 3.99449 4.05203 4.07526 4.11464 4.23162 4.29283 4.36873 4.44491 4.48638 4.51611 4.54714 4.59846 4.66643 4.70883 4.76391 4.84295 4.89743 4.91104 4.96021 4.97116 5.05802 5.13711 5.19491 5.29848 5.34132 5.36472 5.51020 5.61963 6.05558 6.16244 6.25774 6.67825 6.96486 7.29676 8.80083 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.003672 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.514040 B = 7622.700905 C = 8196.422802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.046 3.954 3 C -0.186 4.186 4 C -0.502 4.502 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.915 3.085 9 H -0.275 1.275 10 H -0.305 1.305 11 H -0.224 1.224 12 C -0.583 4.583 13 S 2.611 3.389 14 O -0.990 6.990 15 O -0.980 6.980 16 N -1.100 6.100 17 C 0.142 3.858 18 H 0.097 0.903 19 C 0.049 3.951 20 O -0.575 6.575 21 C -0.103 4.103 22 C 0.062 3.938 23 H 0.051 0.949 24 C -0.149 4.149 25 C -0.147 4.147 26 C 0.032 3.968 27 O -0.396 6.396 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.266 0.734 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.423 0.577 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.395 0.605 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -0.391 24.791 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 C -0.243 4.243 4 C -0.540 4.540 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.234 1.234 11 H -0.149 1.149 12 C -0.715 4.715 13 S 2.706 3.294 14 O -0.981 6.981 15 O -0.969 6.969 16 N -0.860 5.860 17 C 0.035 3.965 18 H 0.115 0.885 19 C -0.030 4.030 20 O -0.382 6.382 21 C -0.142 4.142 22 C 0.005 3.995 23 H 0.069 0.931 24 C -0.187 4.187 25 C -0.185 4.185 26 C -0.044 4.044 27 O -0.316 6.316 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.245 0.755 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.920 0.929 24.756 25.471 hybrid contribution -0.016 -0.392 -1.251 1.311 sum 5.904 0.537 23.505 24.241 Atomic orbital electron populations 1.22693 0.96967 1.02051 1.01528 1.18207 0.92644 0.92106 0.92712 1.22842 1.02996 0.97503 1.00953 1.20911 1.32425 1.11601 0.89110 0.92957 1.25636 0.95377 1.00358 0.95736 1.70046 1.50341 1.37529 0.99446 0.86742 0.79867 0.82014 0.76935 1.20186 1.23372 1.14861 1.30508 1.12732 1.13458 1.14782 1.04800 0.73606 0.75072 0.75874 1.93522 1.31239 1.87094 1.86210 1.93548 1.78299 1.39371 1.85711 1.55336 1.14833 1.70159 1.45662 1.21132 0.79154 0.97306 0.98905 0.88473 1.22897 0.98497 0.85900 0.95740 1.86385 1.73735 1.16662 1.61461 1.21880 1.03592 0.96131 0.92551 1.22927 0.94405 0.87817 0.94394 0.93060 1.23024 1.01107 1.00731 0.93822 1.23112 1.00892 0.95942 0.98512 1.23776 1.01812 0.92886 0.85949 1.88961 1.71831 1.33897 1.36882 0.93360 0.92427 0.91746 0.91030 0.93811 0.91943 0.92468 0.84228 0.84322 0.74085 0.93214 0.90285 0.75521 0.88732 0.88108 0.90024 0.88739 0.88693 0.89746 0.92733 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.83 6.95 71.98 0.50 -7.33 16 2 C 0.05 2.07 0.52 -52.92 -0.03 2.04 16 3 C -0.19 -8.21 7.22 71.98 0.52 -7.69 16 4 C -0.50 -27.09 8.62 25.60 0.22 -26.87 16 5 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 6 C 0.03 1.57 5.31 84.65 0.45 2.02 16 7 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 8 Si 0.91 44.38 22.79 68.60 1.56 45.94 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 11 H -0.22 -10.02 4.67 99.48 0.46 -9.55 16 12 C -0.58 -20.90 4.03 71.98 0.29 -20.61 16 13 S 2.61 89.14 4.48 -56.49 -0.25 88.89 16 14 O -0.99 -38.60 15.93 -127.65 -2.03 -40.63 16 15 O -0.98 -38.17 15.01 -127.65 -1.92 -40.09 16 16 N -1.10 -27.76 4.68 -169.38 -0.79 -28.55 16 17 C 0.14 3.15 2.56 44.99 0.12 3.26 16 18 H 0.10 2.47 7.11 -2.39 -0.02 2.45 16 19 C 0.05 0.90 6.87 71.98 0.49 1.40 16 20 O -0.57 -9.48 12.83 -148.98 -1.91 -11.39 16 21 C -0.10 -1.83 4.02 30.59 0.12 -1.71 16 22 C 0.06 1.28 3.35 30.97 0.10 1.38 16 23 H 0.05 1.22 7.63 -2.39 -0.02 1.21 16 24 C -0.15 -2.05 6.64 31.58 0.21 -1.84 16 25 C -0.15 -1.84 7.16 31.90 0.23 -1.61 16 26 C 0.03 0.59 7.72 72.67 0.56 1.15 16 27 O -0.40 -10.03 10.76 -148.98 -1.60 -11.64 16 28 H 0.05 2.03 6.21 -2.39 -0.01 2.01 16 29 H 0.06 2.64 4.32 -2.39 -0.01 2.63 16 30 H 0.06 2.73 8.11 -2.39 -0.02 2.71 16 31 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.04 1.98 2.28 -2.38 -0.01 1.97 16 33 H 0.06 2.59 5.46 -2.39 -0.01 2.58 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.14 4.44 6.88 -2.39 -0.02 4.43 16 36 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 37 H 0.42 9.27 8.80 -96.75 -0.85 8.42 16 38 H 0.05 1.01 5.73 -2.39 -0.01 0.99 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.40 3.62 9.12 -74.06 -0.68 2.94 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.10 1.57 7.73 -2.39 -0.02 1.55 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.01 7.70 -2.39 -0.02 0.99 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -75.00 366.90 -3.64 -78.64 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.78 Total: 31.74 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 3.79 Total: -56.41 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -0.49 Total: -85.05 kcal Atomic # 8 Polarization: -96.29 SS G_CDS: -7.46 Total: -103.75 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.56 Total: 45.94 kcal Atomic # 16 Polarization: 89.14 SS G_CDS: -0.25 Total: 88.89 kcal Total: -75.00 -3.64 -78.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885525345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.702 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds