Wall clock time and date at job start Tue Mar 31 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00208 * 2 1 4 4 C 1.52996 * 109.47126 * 60.00070 * 3 2 1 5 5 C 1.52997 * 109.47345 * 299.99792 * 3 2 1 6 6 C 1.53004 * 109.47461 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46720 * 65.00035 * 6 3 2 8 8 C 1.46506 * 119.99795 * 269.99790 * 7 6 3 9 9 C 1.34767 * 120.00003 * 90.00779 * 7 6 3 10 10 O 1.21358 * 120.00389 * 0.58506 * 9 7 6 11 11 C 1.49368 * 120.00075 * 180.58947 * 9 7 6 12 12 O 1.21359 * 120.00145 * 354.16258 * 11 9 7 13 13 N 1.34780 * 120.00141 * 174.16032 * 11 9 7 14 14 C 1.39116 * 119.99997 * 186.15918 * 13 11 9 15 15 C 1.39704 * 119.57736 * 175.26793 * 14 13 11 16 16 C 1.38655 * 119.49262 * 180.02562 * 15 14 13 17 17 C 1.38349 * 118.67120 * 359.72415 * 16 15 14 18 18 C 1.40600 * 119.13182 * 0.53581 * 17 16 15 19 19 C 1.41342 * 119.78081 * 179.72691 * 18 17 16 20 20 H 1.07994 * 120.00017 * 13.90306 * 19 18 17 21 21 C 1.40028 * 119.99571 * 193.89961 * 19 18 17 22 22 N 1.30736 * 120.00268 * 12.43100 * 21 19 18 23 23 Si 1.86802 * 119.99676 * 192.43623 * 21 19 18 24 24 H 1.48504 * 109.46899 * 265.01614 * 23 21 19 25 25 H 1.48498 * 109.47646 * 25.01131 * 23 21 19 26 26 H 1.48499 * 109.47137 * 145.01960 * 23 21 19 27 27 N 1.31932 * 119.57622 * 355.29002 * 14 13 11 28 28 H 1.08995 * 109.47246 * 300.00384 * 1 2 3 29 29 H 1.09008 * 109.46995 * 59.99856 * 1 2 3 30 30 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47327 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47397 * 299.99797 * 4 3 2 33 33 H 1.09000 * 109.47329 * 60.00269 * 4 3 2 34 34 H 1.09001 * 109.47587 * 300.00328 * 5 3 2 35 35 H 1.09004 * 109.47133 * 59.99920 * 5 3 2 36 36 H 1.09007 * 109.47502 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.46718 * 305.00317 * 6 3 2 38 38 H 1.09000 * 109.47198 * 185.00010 * 6 3 2 39 39 H 1.09001 * 109.47309 * 263.49305 * 8 7 6 40 40 H 1.09005 * 109.47071 * 23.49491 * 8 7 6 41 41 H 1.08995 * 109.46704 * 143.49437 * 8 7 6 42 42 H 0.97000 * 119.99746 * 6.15939 * 13 11 9 43 43 H 1.08001 * 120.25623 * 359.97438 * 15 14 13 44 44 H 1.07995 * 120.66215 * 180.02562 * 16 15 14 45 45 H 1.07998 * 120.43280 * 180.29388 * 17 16 15 46 46 H 0.96998 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0646 1.2492 5 6 1.5589 2.0647 -1.2492 6 6 3.5355 1.1846 0.0006 7 7 3.9766 0.5639 -1.2509 8 6 4.1063 -0.8927 -1.3403 9 6 4.2634 1.3328 -2.3199 10 8 4.1664 2.5400 -2.2427 11 6 4.7005 0.6992 -3.6000 12 8 4.8997 -0.4970 -3.6480 13 7 4.8736 1.4558 -4.7018 14 6 5.1553 0.8520 -5.9231 15 6 5.2349 1.6350 -7.0774 16 6 5.5153 1.0313 -8.2937 17 6 5.7146 -0.3374 -8.3251 18 6 5.6157 -1.0711 -7.1298 19 6 5.8110 -2.4709 -7.1471 20 1 6.2506 -2.9441 -8.0126 21 6 5.4345 -3.2439 -6.0419 22 7 4.6889 -2.7227 -5.1030 23 14 5.9978 -5.0200 -5.9091 24 1 4.9428 -5.9155 -6.4478 25 1 7.2479 -5.2026 -6.6895 26 1 6.2504 -5.3540 -4.4843 27 7 5.3435 -0.4527 -5.9764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0018 3.0606 1.2490 32 1 0.4723 2.1508 1.2493 33 1 1.8804 1.5237 2.1392 34 1 1.8804 1.5238 -2.1393 35 1 0.4722 2.1508 -1.2493 36 1 2.0019 3.0606 -1.2490 37 1 3.8507 0.5684 0.8427 38 1 3.9785 2.1765 0.0902 39 1 5.1438 -1.1766 -1.1645 40 1 3.4692 -1.3609 -0.5898 41 1 3.8021 -1.2242 -2.3331 42 1 4.8018 2.4214 -4.6433 43 1 5.0784 2.7022 -7.0229 44 1 5.5816 1.6185 -9.1976 45 1 5.9393 -0.8363 -9.2562 46 1 4.4278 -3.2583 -4.3376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890012789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:43 Heat of formation + Delta-G solvation = -43.849082 kcal Electronic energy + Delta-G solvation = -30313.813003 eV Core-core repulsion = 26205.457830 eV Total energy + Delta-G solvation = -4108.355173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60156 -39.24210 -38.31610 -37.21106 -35.63105 -34.15716 -33.11056 -32.70559 -30.42123 -29.22796 -27.99735 -27.56106 -26.72652 -26.31920 -25.57161 -23.51303 -21.65334 -20.91742 -19.99934 -19.19302 -17.95397 -16.99383 -16.83341 -16.34164 -16.20115 -15.74854 -15.28936 -15.12106 -14.74470 -14.68711 -14.49467 -13.84669 -13.81732 -13.53243 -13.18672 -12.97816 -12.89938 -12.67095 -12.58541 -12.20508 -12.10594 -12.01858 -11.93659 -11.84594 -11.74602 -11.37170 -11.23994 -10.99647 -10.81544 -10.72623 -10.68694 -10.54050 -10.06364 -9.69205 -9.67535 -9.05037 -8.79065 -8.53837 -8.08308 -7.32001 -7.05421 -6.41230 -4.41421 1.92216 2.73883 2.82033 3.06975 3.15201 3.17738 3.23988 3.62649 3.94236 3.94603 4.02668 4.59711 4.74593 4.81308 4.83598 4.91671 5.16284 5.25062 5.26184 5.40305 5.45449 5.53282 5.60354 5.62474 5.70210 5.87357 5.90258 5.93864 6.02004 6.07186 6.25207 6.36114 6.45621 6.56472 6.57914 6.76922 6.79318 7.09180 7.19252 7.29305 7.45870 7.50581 7.75392 7.86572 8.03074 8.17353 8.38028 8.65755 8.89016 9.01144 10.11174 10.37952 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003892 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.572802 B = 7192.562168 C = 8662.729761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.171 4.171 6 C 0.129 3.871 7 N -0.580 5.580 8 C 0.073 3.927 9 C 0.507 3.493 10 O -0.537 6.537 11 C 0.473 3.527 12 O -0.394 6.394 13 N -0.639 5.639 14 C 0.370 3.630 15 C -0.347 4.347 16 C -0.035 4.035 17 C -0.300 4.300 18 C 0.281 3.719 19 C -0.433 4.433 20 H 0.084 0.916 21 C 0.073 3.927 22 N -0.682 5.682 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.262 1.262 26 H -0.276 1.276 27 N -0.482 5.482 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.411 0.589 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 5.774 12.683 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.293 6.293 3 C 0.054 3.946 4 C -0.233 4.233 5 C -0.229 4.229 6 C 0.006 3.994 7 N -0.312 5.312 8 C -0.069 4.069 9 C 0.290 3.710 10 O -0.415 6.415 11 C 0.250 3.750 12 O -0.258 6.258 13 N -0.287 5.287 14 C 0.132 3.868 15 C -0.372 4.372 16 C -0.060 4.060 17 C -0.323 4.323 18 C 0.156 3.844 19 C -0.463 4.463 20 H 0.102 0.898 21 C -0.156 4.156 22 N -0.301 5.301 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.186 1.186 26 H -0.201 1.201 27 N -0.201 5.201 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.247 0.753 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.442 4.724 13.713 15.870 hybrid contribution -0.093 0.522 -0.581 0.786 sum -6.535 5.246 13.133 15.579 Atomic orbital electron populations 1.22755 0.81759 1.02519 0.99931 1.87980 1.19336 1.26963 1.95002 1.21992 0.93936 0.83764 0.94871 1.22347 1.02070 1.01049 0.97807 1.22400 1.00849 1.01574 0.98032 1.21580 0.91243 1.00345 0.86232 1.47577 1.64159 1.08750 1.10763 1.22368 1.01442 0.77138 1.05942 1.20690 0.77985 0.86860 0.85422 1.90671 1.52805 1.14054 1.83958 1.20044 0.82355 0.88115 0.84461 1.91029 1.40694 1.12016 1.82100 1.43024 1.68957 1.10363 1.06376 1.18453 0.94339 0.91195 0.82853 1.20507 1.25614 0.98126 0.92996 1.20599 0.95462 0.94455 0.95441 1.21679 1.17721 0.94214 0.98733 1.18300 0.87249 0.93401 0.85447 1.19508 1.35003 0.90377 1.01417 0.89810 1.25979 0.94389 1.00031 0.95161 1.69999 1.19601 1.35254 1.05198 0.86464 0.80053 0.82715 0.78466 1.19781 1.18625 1.20087 1.68409 1.19577 1.04499 1.27597 0.94107 0.93854 0.89831 0.91163 0.91901 0.91650 0.91920 0.92788 0.90566 0.89473 0.88308 0.92605 0.91313 0.87226 0.75321 0.88703 0.88352 0.88326 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.21 101.05 1.03 1.29 16 2 O -0.37 -4.60 9.30 -35.23 -0.33 -4.93 16 3 C 0.09 1.07 0.91 -90.62 -0.08 0.99 16 4 C -0.17 -1.49 8.25 37.16 0.31 -1.18 16 5 C -0.17 -2.18 6.89 37.16 0.26 -1.92 16 6 C 0.13 1.54 4.76 -4.04 -0.02 1.52 16 7 N -0.58 -8.73 2.53 -182.10 -0.46 -9.20 16 8 C 0.07 1.12 9.16 59.85 0.55 1.66 16 9 C 0.51 8.86 6.00 -11.63 -0.07 8.79 16 10 O -0.54 -9.44 14.29 5.49 0.08 -9.36 16 11 C 0.47 9.82 7.71 -11.62 -0.09 9.73 16 12 O -0.39 -9.25 9.71 5.49 0.05 -9.19 16 13 N -0.64 -13.31 5.37 -11.83 -0.06 -13.37 16 14 C 0.37 9.01 7.43 -155.09 -1.15 7.86 16 15 C -0.35 -7.79 9.95 -38.88 -0.39 -8.18 16 16 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 17 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 18 C 0.28 7.72 6.45 -84.99 -0.55 7.17 16 19 C -0.43 -11.59 9.12 -37.73 -0.34 -11.93 16 20 H 0.08 2.11 7.88 -52.49 -0.41 1.70 16 21 C 0.07 1.86 5.41 -17.35 -0.09 1.76 16 22 N -0.68 -17.91 10.06 55.55 0.56 -17.35 16 23 Si 0.90 18.74 29.58 -169.99 -5.03 13.71 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 N -0.48 -13.20 5.88 -10.27 -0.06 -13.26 16 28 H 0.04 0.33 6.42 -51.93 -0.33 0.00 16 29 H 0.04 0.43 6.42 -51.92 -0.33 0.10 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.98 6.25 -51.93 -0.32 0.66 16 35 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 36 H 0.08 0.99 7.45 -51.93 -0.39 0.60 16 37 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.10 1.15 7.41 -51.93 -0.38 0.77 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 41 H 0.11 2.04 5.60 -51.93 -0.29 1.75 16 42 H 0.41 7.35 8.18 -40.82 -0.33 7.01 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 46 H 0.28 6.65 8.29 -40.82 -0.34 6.32 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -30.83 369.32 -7.48 -38.31 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.37 Total: 10.51 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.42 Total: 8.57 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.03 Total: -53.17 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.20 Total: -23.49 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.83 -7.48 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890012789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.541 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds