Wall clock time and date at job start Tue Mar 31 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00208 * 2 1 4 4 C 1.52996 * 109.47126 * 60.00070 * 3 2 1 5 5 C 1.52997 * 109.47345 * 299.99792 * 3 2 1 6 6 C 1.53004 * 109.47461 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46720 * 65.00035 * 6 3 2 8 8 C 1.46506 * 119.99795 * 269.99790 * 7 6 3 9 9 C 1.34767 * 120.00003 * 90.00779 * 7 6 3 10 10 O 1.21358 * 120.00389 * 0.58506 * 9 7 6 11 11 C 1.49368 * 120.00075 * 180.58947 * 9 7 6 12 12 O 1.21359 * 120.00145 * 354.16258 * 11 9 7 13 13 N 1.34780 * 120.00141 * 174.16032 * 11 9 7 14 14 C 1.39116 * 119.99997 * 186.15918 * 13 11 9 15 15 C 1.39704 * 119.57736 * 175.26793 * 14 13 11 16 16 C 1.38655 * 119.49262 * 180.02562 * 15 14 13 17 17 C 1.38349 * 118.67120 * 359.72415 * 16 15 14 18 18 C 1.40600 * 119.13182 * 0.53581 * 17 16 15 19 19 C 1.41342 * 119.78081 * 179.72691 * 18 17 16 20 20 H 1.07994 * 120.00017 * 13.90306 * 19 18 17 21 21 C 1.40028 * 119.99571 * 193.89961 * 19 18 17 22 22 N 1.30736 * 120.00268 * 12.43100 * 21 19 18 23 23 Si 1.86802 * 119.99676 * 192.43623 * 21 19 18 24 24 H 1.48504 * 109.46899 * 265.01614 * 23 21 19 25 25 H 1.48498 * 109.47646 * 25.01131 * 23 21 19 26 26 H 1.48499 * 109.47137 * 145.01960 * 23 21 19 27 27 N 1.31932 * 119.57622 * 355.29002 * 14 13 11 28 28 H 1.08995 * 109.47246 * 300.00384 * 1 2 3 29 29 H 1.09008 * 109.46995 * 59.99856 * 1 2 3 30 30 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47327 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47397 * 299.99797 * 4 3 2 33 33 H 1.09000 * 109.47329 * 60.00269 * 4 3 2 34 34 H 1.09001 * 109.47587 * 300.00328 * 5 3 2 35 35 H 1.09004 * 109.47133 * 59.99920 * 5 3 2 36 36 H 1.09007 * 109.47502 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.46718 * 305.00317 * 6 3 2 38 38 H 1.09000 * 109.47198 * 185.00010 * 6 3 2 39 39 H 1.09001 * 109.47309 * 263.49305 * 8 7 6 40 40 H 1.09005 * 109.47071 * 23.49491 * 8 7 6 41 41 H 1.08995 * 109.46704 * 143.49437 * 8 7 6 42 42 H 0.97000 * 119.99746 * 6.15939 * 13 11 9 43 43 H 1.08001 * 120.25623 * 359.97438 * 15 14 13 44 44 H 1.07995 * 120.66215 * 180.02562 * 16 15 14 45 45 H 1.07998 * 120.43280 * 180.29388 * 17 16 15 46 46 H 0.96998 * 119.99879 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0646 1.2492 5 6 1.5589 2.0647 -1.2492 6 6 3.5355 1.1846 0.0006 7 7 3.9766 0.5639 -1.2509 8 6 4.1063 -0.8927 -1.3403 9 6 4.2634 1.3328 -2.3199 10 8 4.1664 2.5400 -2.2427 11 6 4.7005 0.6992 -3.6000 12 8 4.8997 -0.4970 -3.6480 13 7 4.8736 1.4558 -4.7018 14 6 5.1553 0.8520 -5.9231 15 6 5.2349 1.6350 -7.0774 16 6 5.5153 1.0313 -8.2937 17 6 5.7146 -0.3374 -8.3251 18 6 5.6157 -1.0711 -7.1298 19 6 5.8110 -2.4709 -7.1471 20 1 6.2506 -2.9441 -8.0126 21 6 5.4345 -3.2439 -6.0419 22 7 4.6889 -2.7227 -5.1030 23 14 5.9978 -5.0200 -5.9091 24 1 4.9428 -5.9155 -6.4478 25 1 7.2479 -5.2026 -6.6895 26 1 6.2504 -5.3540 -4.4843 27 7 5.3435 -0.4527 -5.9764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.0018 3.0606 1.2490 32 1 0.4723 2.1508 1.2493 33 1 1.8804 1.5237 2.1392 34 1 1.8804 1.5238 -2.1393 35 1 0.4722 2.1508 -1.2493 36 1 2.0019 3.0606 -1.2490 37 1 3.8507 0.5684 0.8427 38 1 3.9785 2.1765 0.0902 39 1 5.1438 -1.1766 -1.1645 40 1 3.4692 -1.3609 -0.5898 41 1 3.8021 -1.2242 -2.3331 42 1 4.8018 2.4214 -4.6433 43 1 5.0784 2.7022 -7.0229 44 1 5.5816 1.6185 -9.1976 45 1 5.9393 -0.8363 -9.2562 46 1 4.4278 -3.2583 -4.3376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890012789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:42 Heat of formation + Delta-G solvation = -63.082914 kcal Electronic energy + Delta-G solvation = -30314.647044 eV Core-core repulsion = 26205.457830 eV Total energy + Delta-G solvation = -4109.189215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00335 -40.64268 -39.67191 -38.82561 -36.96869 -35.84271 -34.87493 -33.70790 -32.30492 -31.07927 -28.99947 -28.42720 -27.91309 -27.66005 -27.17654 -25.01027 -23.45025 -22.57767 -21.10279 -20.63568 -19.64886 -18.48312 -18.27797 -17.78280 -17.48345 -16.90202 -16.49914 -16.39850 -16.30285 -16.28043 -15.91973 -15.54483 -15.16175 -15.06676 -14.67358 -14.22931 -14.05489 -13.89862 -13.82164 -13.74682 -13.41416 -13.25565 -12.96298 -12.95474 -12.86822 -12.71852 -12.67527 -12.61026 -12.35202 -12.25701 -12.15780 -11.84579 -11.64095 -11.45364 -10.88133 -10.56051 -10.34940 -9.98580 -9.78493 -9.17534 -8.91238 -8.27749 -6.38701 0.37044 1.03134 1.25899 1.35667 1.43092 1.53274 1.57402 2.28006 2.35269 2.50376 2.79492 2.95099 3.37696 3.72388 3.86313 3.97520 3.99939 4.32769 4.33394 4.39210 4.47209 4.49154 4.56724 4.64598 4.66094 4.67934 4.76379 4.80319 4.84733 4.87536 4.93982 4.95512 4.99996 5.13864 5.16337 5.25207 5.31647 5.37731 5.63480 5.71833 5.89292 5.95223 6.11085 6.25971 6.29012 6.48664 6.71683 6.84401 7.01978 7.26979 8.22159 8.52206 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003892 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.572802 B = 7192.562168 C = 8662.729761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.095 3.905 4 C -0.168 4.168 5 C -0.166 4.166 6 C 0.123 3.877 7 N -0.571 5.571 8 C 0.084 3.916 9 C 0.514 3.486 10 O -0.539 6.539 11 C 0.462 3.538 12 O -0.423 6.423 13 N -0.634 5.634 14 C 0.349 3.651 15 C -0.341 4.341 16 C -0.032 4.032 17 C -0.322 4.322 18 C 0.248 3.752 19 C -0.471 4.471 20 H 0.087 0.913 21 C 0.030 3.970 22 N -0.713 5.713 23 Si 0.975 3.025 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.272 1.272 27 N -0.513 5.513 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.424 0.576 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 6.577 14.203 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.055 3.945 4 C -0.225 4.225 5 C -0.224 4.224 6 C 0.001 3.999 7 N -0.302 5.302 8 C -0.058 4.058 9 C 0.297 3.703 10 O -0.418 6.418 11 C 0.241 3.759 12 O -0.289 6.289 13 N -0.284 5.284 14 C 0.111 3.889 15 C -0.366 4.366 16 C -0.056 4.056 17 C -0.345 4.345 18 C 0.122 3.878 19 C -0.501 4.501 20 H 0.105 0.895 21 C -0.196 4.196 22 N -0.332 5.332 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.197 1.197 27 N -0.232 5.232 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.262 0.738 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.126 0.874 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.973 5.571 15.255 17.674 hybrid contribution 0.005 0.408 -1.065 1.141 sum -6.968 5.980 14.190 16.902 Atomic orbital electron populations 1.22890 0.80557 1.03295 1.00607 1.87941 1.20736 1.27521 1.95154 1.22010 0.93271 0.83731 0.95521 1.22287 1.02700 1.01134 0.96413 1.22347 1.01624 1.00993 0.97396 1.21918 0.92020 1.00922 0.84993 1.47608 1.62963 1.08500 1.11144 1.22158 1.01664 0.77420 1.04536 1.20010 0.78640 0.86789 0.84888 1.90664 1.53486 1.13798 1.83866 1.20744 0.81651 0.88004 0.85527 1.91037 1.41640 1.13331 1.82904 1.43021 1.68647 1.11003 1.05682 1.18911 0.94291 0.90986 0.84699 1.20953 1.23553 0.99751 0.92352 1.21054 0.93661 0.93873 0.97040 1.21878 1.18737 0.95536 0.98373 1.18771 0.88052 0.94367 0.86571 1.19820 1.36727 0.90972 1.02606 0.89534 1.26794 0.94127 1.04250 0.94405 1.70107 1.20510 1.36943 1.05669 0.85322 0.79608 0.77095 0.78412 1.18703 1.18417 1.19671 1.68363 1.20649 1.06090 1.28118 0.91964 0.94551 0.89157 0.90252 0.91008 0.90409 0.95449 0.91572 0.90901 0.87096 0.87659 0.92685 0.89163 0.90664 0.73822 0.85249 0.84272 0.87363 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.21 113.37 1.16 1.56 16 2 O -0.39 -9.03 9.30 -148.98 -1.39 -10.42 16 3 C 0.09 1.96 0.91 -10.79 -0.01 1.95 16 4 C -0.17 -2.32 8.25 71.98 0.59 -1.73 16 5 C -0.17 -4.08 6.89 71.98 0.50 -3.58 16 6 C 0.12 2.70 4.76 86.38 0.41 3.11 16 7 N -0.57 -16.93 2.53 -848.42 -2.15 -19.08 16 8 C 0.08 2.60 9.16 127.77 1.17 3.77 16 9 C 0.51 18.06 6.00 87.25 0.52 18.59 16 10 O -0.54 -18.68 14.29 -3.27 -0.05 -18.73 16 11 C 0.46 19.77 7.71 87.24 0.67 20.44 16 12 O -0.42 -20.77 9.71 -3.27 -0.03 -20.80 16 13 N -0.63 -26.78 5.37 -309.70 -1.66 -28.45 16 14 C 0.35 17.25 7.43 133.30 0.99 18.24 16 15 C -0.34 -14.91 9.95 22.72 0.23 -14.69 16 16 C -0.03 -1.40 10.15 22.40 0.23 -1.17 16 17 C -0.32 -16.11 9.83 22.87 0.22 -15.89 16 18 C 0.25 14.07 6.45 40.20 0.26 14.33 16 19 C -0.47 -26.18 9.12 23.47 0.21 -25.97 16 20 H 0.09 4.53 7.88 -2.91 -0.02 4.51 16 21 C 0.03 1.56 5.41 85.29 0.46 2.02 16 22 N -0.71 -39.02 10.06 21.84 0.22 -38.80 16 23 Si 0.97 39.47 29.58 68.60 2.03 41.50 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 26 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 27 N -0.51 -29.04 5.88 -186.42 -1.10 -30.14 16 28 H 0.06 0.83 6.42 -2.39 -0.02 0.81 16 29 H 0.04 0.68 6.42 -2.38 -0.02 0.67 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 32 H 0.07 0.88 6.54 -2.39 -0.02 0.87 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.03 0.85 6.25 -2.39 -0.01 0.84 16 35 H 0.07 1.41 6.54 -2.38 -0.02 1.40 16 36 H 0.07 1.81 7.45 -2.38 -0.02 1.79 16 37 H 0.11 1.94 8.07 -2.38 -0.02 1.92 16 38 H 0.11 2.22 7.41 -2.39 -0.02 2.20 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.37 7.26 -2.38 -0.02 2.35 16 41 H 0.07 2.94 5.60 -2.39 -0.01 2.92 16 42 H 0.42 15.05 8.18 -92.71 -0.76 14.30 16 43 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 46 H 0.28 14.03 8.29 -92.71 -0.77 13.26 16 Total: -1.00 -69.42 369.32 3.76 -65.67 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.26 Total: 38.26 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 7.62 Total: 20.98 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.69 Total: -116.47 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.46 Total: -49.94 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -69.42 3.76 -65.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890012789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.583 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds