Wall clock time and date at job start Tue Mar 31 2020 18:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46775 * 2 1 4 4 C 1.52996 * 109.47594 * 239.99464 * 2 1 3 5 5 O 1.45205 * 109.46840 * 119.99577 * 2 1 3 6 6 C 1.34642 * 116.99879 * 60.00230 * 5 2 1 7 7 O 1.21511 * 120.00082 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99987 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00205 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47188 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.47322 * 180.02562 * 10 9 8 12 12 O 1.21279 * 119.99629 * 4.99584 * 11 10 9 13 13 N 1.34769 * 120.00298 * 184.99732 * 11 10 9 14 14 C 1.37208 * 120.00389 * 4.96749 * 13 11 10 15 15 H 1.08001 * 119.99905 * 50.16450 * 14 13 11 16 16 C 1.38894 * 120.00489 * 230.17352 * 14 13 11 17 17 N 1.31414 * 119.99700 * 7.35362 * 16 14 13 18 18 Si 1.86797 * 120.00334 * 187.36061 * 16 14 13 19 19 H 1.48497 * 109.47567 * 89.99294 * 18 16 14 20 20 H 1.48499 * 109.47247 * 209.99981 * 18 16 14 21 21 H 1.48501 * 109.46909 * 329.99581 * 18 16 14 22 22 C 1.39428 * 119.99914 * 184.97378 * 13 11 10 23 23 C 1.39075 * 119.69657 * 184.99852 * 22 13 11 24 24 C 1.38383 * 119.09774 * 180.02562 * 23 22 13 25 25 C 1.38829 * 118.49169 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31415 * 0.24813 * 25 24 23 27 27 N 1.31888 * 120.84781 * 359.47880 * 26 25 24 28 28 H 1.08995 * 109.47335 * 300.00309 * 1 2 3 29 29 H 1.09007 * 109.46839 * 60.00514 * 1 2 3 30 30 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46745 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47150 * 299.99555 * 3 2 1 33 33 H 1.09001 * 109.47277 * 60.00123 * 3 2 1 34 34 H 1.09000 * 109.47219 * 300.00511 * 4 2 1 35 35 H 1.09007 * 109.47010 * 60.00126 * 4 2 1 36 36 H 1.08999 * 109.47491 * 179.97438 * 4 2 1 37 37 H 0.97006 * 119.99761 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.46718 * 60.00401 * 9 8 6 39 39 H 1.09003 * 109.47157 * 300.00520 * 9 8 6 40 40 H 1.09003 * 109.47160 * 60.00430 * 10 9 8 41 41 H 1.08993 * 109.47297 * 300.00413 * 10 9 8 42 42 H 0.96996 * 119.99886 * 174.99314 * 17 16 14 43 43 H 1.07997 * 120.45205 * 0.04036 * 23 22 13 44 44 H 1.07993 * 120.75081 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.34320 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.57851 * 179.74929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9723 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0679 -2.6656 2.4168 9 6 1.6738 -4.0668 2.5834 10 6 2.2739 -4.6147 3.8797 11 6 1.8691 -6.0562 4.0508 12 8 1.2461 -6.6190 3.1756 13 7 2.1992 -6.7198 5.1763 14 6 2.8136 -6.0568 6.2086 15 1 2.3989 -5.1307 6.5784 16 6 3.9690 -6.5766 6.7779 17 7 4.5547 -7.6218 6.2380 18 14 4.6902 -5.7901 8.3111 19 1 4.1057 -6.4295 9.5172 20 1 6.1634 -5.9764 8.3168 21 1 4.3748 -4.3390 8.3181 22 6 1.9164 -8.0802 5.2918 23 6 2.1639 -8.7358 6.4931 24 6 1.8792 -10.0863 6.5939 25 6 1.3552 -10.7371 5.4852 26 6 1.1400 -10.0244 4.3215 27 7 1.4162 -8.7364 4.2566 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2493 37 1 2.6275 -2.2367 3.0830 38 1 2.0396 -4.6500 1.7383 39 1 0.5869 -4.1356 2.6290 40 1 1.9077 -4.0314 4.7246 41 1 3.3607 -4.5458 3.8345 42 1 5.3999 -7.9405 6.5915 43 1 2.5725 -8.1983 7.3360 44 1 2.0605 -10.6217 7.5141 45 1 1.1224 -11.7908 5.5306 46 1 0.7364 -10.5273 3.4553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892463560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:15 Heat of formation + Delta-G solvation = -83.668102 kcal Electronic energy + Delta-G solvation = -28914.007498 eV Core-core repulsion = 24803.925643 eV Total energy + Delta-G solvation = -4110.081855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82815 -41.48612 -39.75078 -38.48013 -36.95812 -36.20037 -34.95868 -33.91882 -32.78439 -32.04024 -30.52617 -28.34431 -28.26410 -27.14167 -25.89633 -24.07464 -23.54747 -22.76908 -21.37484 -20.84249 -19.75474 -19.04214 -18.15560 -17.54713 -17.44481 -17.33592 -16.81621 -16.49554 -16.23072 -16.16791 -15.58890 -15.50371 -15.42730 -15.10250 -15.00652 -14.49786 -14.30189 -14.10563 -13.66177 -13.45875 -13.32244 -13.20438 -13.11760 -12.92817 -12.87283 -12.84121 -12.65501 -12.61584 -12.37449 -12.30919 -12.26951 -12.00475 -11.37715 -11.17071 -11.12684 -10.83473 -10.66365 -10.41026 -10.26491 -9.69019 -8.79957 -8.22409 -6.38124 0.55058 0.77137 1.10226 1.47431 1.52024 1.62783 1.75076 2.03157 2.27043 2.67119 2.93804 3.22293 3.46043 3.77993 3.81431 3.82272 3.88385 3.97323 4.12459 4.22596 4.27426 4.52185 4.56752 4.61715 4.63496 4.67718 4.73953 4.78770 4.81613 4.85591 4.90621 4.91438 4.96725 5.11759 5.18032 5.24748 5.30853 5.37958 5.39663 5.43986 5.57774 5.60483 5.90178 6.17098 6.39937 6.42049 7.01196 7.16224 7.34250 7.52298 7.99816 8.67503 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.002725 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.682297 B =10271.992536 C =11794.294615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.646 3.354 7 O -0.595 6.595 8 N -0.697 5.697 9 C 0.170 3.830 10 C -0.112 4.112 11 C 0.479 3.521 12 O -0.559 6.559 13 N -0.400 5.400 14 C -0.374 4.374 15 H 0.114 0.886 16 C 0.018 3.982 17 N -0.881 5.881 18 Si 0.988 3.012 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.248 1.248 22 C 0.349 3.651 23 C -0.159 4.159 24 C -0.079 4.079 25 C -0.218 4.218 26 C 0.087 3.913 27 N -0.535 5.535 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.420 0.580 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.275 0.725 43 H 0.126 0.874 44 H 0.151 0.849 45 H 0.159 0.841 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 12.627 -2.859 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.399 3.601 7 O -0.486 6.486 8 N -0.357 5.357 9 C 0.046 3.954 10 C -0.152 4.152 11 C 0.269 3.731 12 O -0.438 6.438 13 N -0.112 5.112 14 C -0.501 4.501 15 H 0.132 0.868 16 C -0.188 4.188 17 N -0.514 5.514 18 Si 0.810 3.190 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.171 1.171 22 C 0.119 3.881 23 C -0.184 4.184 24 C -0.105 4.105 25 C -0.240 4.240 26 C -0.071 4.071 27 N -0.251 5.251 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.169 0.831 45 H 0.177 0.823 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.037 12.578 -4.515 13.518 hybrid contribution 0.995 -0.557 1.557 1.930 sum -1.042 12.021 -2.957 12.423 Atomic orbital electron populations 1.22481 0.94055 1.03494 1.03751 1.22470 0.94641 0.92900 0.81402 1.21879 1.02465 0.90226 1.04465 1.22487 1.01676 1.02083 0.97618 1.86313 1.71575 1.22566 1.47535 1.18187 0.78744 0.80976 0.82157 1.90908 1.42348 1.71130 1.44254 1.44569 1.55331 1.12078 1.23734 1.20728 0.99303 0.78313 0.97057 1.21399 1.03641 0.91942 0.98255 1.21379 0.80439 0.90149 0.81101 1.90661 1.40991 1.70609 1.41531 1.41453 1.50187 1.04719 1.14835 1.19846 1.08132 1.09230 1.12874 0.86850 1.26400 0.95718 0.95452 1.01220 1.70112 1.16372 1.23695 1.41217 0.85006 0.76894 0.79845 0.77250 1.19663 1.21152 1.17122 1.19203 0.91807 0.87356 0.89717 1.21552 1.02844 0.95831 0.98123 1.21625 0.95876 0.93319 0.99691 1.22081 1.05669 1.02134 0.94091 1.22884 0.96833 0.88850 0.98501 1.67558 1.16171 1.10793 1.30596 0.91738 0.88849 0.92466 0.91139 0.87787 0.91012 0.92496 0.88817 0.91904 0.74255 0.92784 0.92198 0.86336 0.87335 0.91545 0.85639 0.83104 0.82320 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 3 C -0.13 -1.76 8.85 71.98 0.64 -1.13 16 4 C -0.18 -3.86 8.37 71.98 0.60 -3.26 16 5 O -0.37 -9.50 9.94 -55.52 -0.55 -10.05 16 6 C 0.65 20.13 8.06 129.79 1.05 21.17 16 7 O -0.60 -22.11 11.88 19.81 0.24 -21.87 16 8 N -0.70 -19.78 5.56 -590.85 -3.29 -23.07 16 9 C 0.17 5.87 4.98 86.38 0.43 6.30 16 10 C -0.11 -3.99 4.73 29.85 0.14 -3.85 16 11 C 0.48 23.08 7.58 87.66 0.66 23.75 16 12 O -0.56 -30.36 14.28 -3.03 -0.04 -30.40 16 13 N -0.40 -20.15 2.68 -464.37 -1.24 -21.40 16 14 C -0.37 -17.26 7.67 84.01 0.64 -16.62 16 15 H 0.11 4.70 7.36 -2.91 -0.02 4.68 16 16 C 0.02 0.83 3.59 84.91 0.31 1.13 16 17 N -0.88 -44.27 11.12 21.65 0.24 -44.03 16 18 Si 0.99 35.02 29.56 68.60 2.03 37.05 16 19 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 20 H -0.29 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 22 C 0.35 18.10 6.63 132.91 0.88 18.98 16 23 C -0.16 -7.45 7.61 22.51 0.17 -7.27 16 24 C -0.08 -3.03 10.17 22.45 0.23 -2.81 16 25 C -0.22 -7.79 10.11 22.39 0.23 -7.56 16 26 C 0.09 3.66 11.18 84.66 0.95 4.60 16 27 N -0.53 -27.66 7.92 -192.95 -1.53 -29.19 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 9.29 8.58 -92.70 -0.80 8.50 16 38 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.12 3.61 7.54 -2.39 -0.02 3.59 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.27 13.12 8.32 -92.71 -0.77 12.35 16 43 H 0.13 5.98 5.55 -2.91 -0.02 5.96 16 44 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 45 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 46 H 0.16 5.69 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -70.90 377.88 3.57 -67.33 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: 0.21 Total: 42.81 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 7.51 Total: 32.82 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.82 Total: -117.69 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -0.36 Total: -62.33 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -70.90 3.57 -67.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892463560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds