Wall clock time and date at job start Tue Mar 31 2020 18:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99634 * 2 1 4 4 C 1.50697 * 109.46989 * 90.00621 * 3 2 1 5 5 O 1.21272 * 120.00050 * 4.88171 * 4 3 2 6 6 N 1.34771 * 119.99859 * 184.88310 * 4 3 2 7 7 C 1.37214 * 120.00462 * 4.96824 * 6 4 3 8 8 H 1.07996 * 119.99485 * 50.15846 * 7 6 4 9 9 C 1.38885 * 120.00250 * 230.16599 * 7 6 4 10 10 N 1.31417 * 120.00234 * 7.35852 * 9 7 6 11 11 Si 1.86800 * 119.99961 * 187.36356 * 9 7 6 12 12 H 1.48493 * 109.47349 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47279 * 120.00067 * 11 9 7 14 14 H 1.48505 * 109.47096 * 239.99663 * 11 9 7 15 15 C 1.39428 * 120.00065 * 184.96884 * 6 4 3 16 16 C 1.39073 * 119.69987 * 185.00078 * 15 6 4 17 17 C 1.38377 * 119.09900 * 180.02562 * 16 15 6 18 18 C 1.38822 * 118.49331 * 359.97438 * 17 16 15 19 19 C 1.38153 * 119.31371 * 0.25348 * 18 17 16 20 20 N 1.31877 * 120.84820 * 359.47890 * 19 18 17 21 21 C 1.34777 * 119.99976 * 180.02562 * 2 1 3 22 22 O 1.21513 * 119.99868 * 180.02562 * 21 2 1 23 23 O 1.34634 * 120.00080 * 359.97438 * 21 2 1 24 24 C 1.45195 * 116.99833 * 180.02562 * 23 21 2 25 25 C 1.53003 * 109.47231 * 60.00428 * 24 23 21 26 26 C 1.53002 * 109.47025 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47723 * 300.00272 * 24 23 21 28 28 H 1.08990 * 109.47165 * 89.99609 * 1 2 3 29 29 H 1.08998 * 109.46896 * 209.99857 * 1 2 3 30 30 H 1.08996 * 109.47116 * 329.99508 * 1 2 3 31 31 H 1.08995 * 109.47105 * 330.00195 * 3 2 1 32 32 H 1.09000 * 109.46652 * 210.00357 * 3 2 1 33 33 H 0.97000 * 120.00038 * 174.99329 * 10 9 7 34 34 H 1.08001 * 120.44599 * 0.04337 * 16 15 6 35 35 H 1.08003 * 120.75223 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.34729 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.57393 * 179.74706 * 19 18 17 38 38 H 1.09001 * 109.47086 * 59.99797 * 25 24 23 39 39 H 1.09001 * 109.47270 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47254 * 300.00063 * 25 24 23 41 41 H 1.09006 * 109.46677 * 60.00556 * 26 24 23 42 42 H 1.09001 * 109.47246 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47441 * 300.00294 * 26 24 23 44 44 H 1.09002 * 109.46577 * 60.00051 * 27 24 23 45 45 H 1.08993 * 109.47294 * 179.97438 * 27 24 23 46 46 H 1.09002 * 109.46505 * 300.00349 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.1340 0.9796 2.3413 6 7 3.0231 2.8975 1.6685 7 6 3.2861 3.7602 0.6344 8 1 2.5115 3.9999 -0.0790 9 6 4.5483 4.3250 0.5050 10 7 5.5298 3.9256 1.2823 11 14 4.8508 5.6527 -0.7738 12 1 3.5929 5.9211 -1.5158 13 1 5.3030 6.8958 -0.0992 14 1 5.8973 5.1960 -1.7234 15 6 3.3503 3.2559 2.9756 16 6 3.8460 4.5286 3.2375 17 6 4.1672 4.8710 4.5392 18 6 3.9803 3.9252 5.5381 19 6 3.4881 2.6781 5.2051 20 7 3.1858 2.3817 3.9562 21 6 2.1389 -1.1672 -0.0005 22 8 3.3540 -1.1672 -0.0001 23 8 1.4657 -2.3332 -0.0005 24 6 2.2566 -3.5509 -0.0005 25 6 3.1392 -3.5858 1.2488 26 6 1.3246 -4.7642 0.0001 27 6 3.1394 -3.5858 -1.2497 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 -0.5138 32 1 3.1498 1.1385 -0.5139 33 1 6.4273 4.2666 1.1442 34 1 3.9782 5.2402 2.4358 35 1 4.5537 5.8521 4.7729 36 1 4.2215 4.1604 6.5642 37 1 3.3449 1.9377 5.9783 38 1 2.5103 -3.5610 2.1387 39 1 3.7326 -4.5001 1.2490 40 1 3.8032 -2.7213 1.2489 41 1 0.6955 -4.7396 -0.8897 42 1 1.9182 -5.6784 0.0006 43 1 0.6960 -4.7392 0.8903 44 1 3.8033 -2.7214 -1.2496 45 1 3.7333 -4.4997 -1.2494 46 1 2.5105 -3.5609 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:19 Heat of formation + Delta-G solvation = -46.026922 kcal Electronic energy + Delta-G solvation = -30377.390518 eV Core-core repulsion = 26268.940907 eV Total energy + Delta-G solvation = -4108.449611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51826 -39.67300 -38.11658 -36.87016 -35.21632 -34.81923 -33.64226 -32.10856 -31.01061 -29.64589 -27.88421 -27.34879 -27.22488 -26.06580 -25.28039 -22.83943 -22.11716 -21.34734 -19.53103 -18.98807 -18.03317 -17.45569 -16.65854 -16.36383 -15.66743 -15.58436 -15.15123 -14.87245 -14.68686 -14.43509 -14.25454 -13.97663 -13.86623 -13.38722 -13.20841 -13.09744 -12.70802 -12.55178 -12.44375 -12.12085 -12.06598 -12.02416 -11.78399 -11.76273 -11.68139 -11.48225 -11.26892 -11.17308 -11.10505 -11.03476 -10.78138 -10.46446 -10.14978 -9.65483 -9.40927 -9.21524 -8.90167 -8.66122 -8.43486 -7.79714 -7.00041 -6.44280 -4.53992 2.27402 2.43302 2.47921 3.00396 3.09473 3.13148 3.26846 3.76861 3.94359 4.10288 4.48799 4.70384 4.82351 4.85662 5.01148 5.22031 5.38467 5.48746 5.49618 5.55891 5.61032 5.67957 5.73367 5.74298 5.81314 5.84464 5.93058 5.97999 6.00566 6.04641 6.08582 6.20574 6.39132 6.40004 6.44716 6.54614 6.70102 6.76439 6.87255 7.12678 7.18935 7.29024 7.58008 7.72075 7.92907 8.21308 8.73952 8.81837 8.91307 9.34838 9.78286 10.44317 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.003959 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.073455 B = 7071.552179 C = 8213.492109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.583 5.583 3 C 0.132 3.868 4 C 0.477 3.523 5 O -0.512 6.512 6 N -0.386 5.386 7 C -0.368 4.368 8 H 0.099 0.901 9 C 0.053 3.947 10 N -0.839 5.839 11 Si 0.919 3.081 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.388 3.612 16 C -0.142 4.142 17 C -0.081 4.081 18 C -0.238 4.238 19 C 0.106 3.894 20 N -0.495 5.495 21 C 0.657 3.343 22 O -0.561 6.561 23 O -0.364 6.364 24 C 0.136 3.864 25 C -0.183 4.183 26 C -0.138 4.138 27 C -0.182 4.182 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.276 0.724 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -6.807 -3.639 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.322 5.322 3 C 0.007 3.993 4 C 0.264 3.736 5 O -0.386 6.386 6 N -0.099 5.099 7 C -0.496 4.496 8 H 0.117 0.883 9 C -0.157 4.157 10 N -0.471 5.471 11 Si 0.744 3.256 12 H -0.187 1.187 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.157 3.843 16 C -0.167 4.167 17 C -0.107 4.107 18 C -0.260 4.260 19 C -0.053 4.053 20 N -0.211 5.211 21 C 0.412 3.588 22 O -0.450 6.450 23 O -0.279 6.279 24 C 0.099 3.901 25 C -0.240 4.240 26 C -0.195 4.195 27 C -0.240 4.240 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.621 -8.090 -3.418 10.999 hybrid contribution 0.963 1.602 -0.304 1.894 sum -5.658 -6.488 -3.722 9.379 Atomic orbital electron populations 1.21682 0.78808 1.03563 1.01162 1.46266 1.06969 1.03136 1.75825 1.21194 0.99409 0.82619 0.96060 1.21230 0.79918 0.81266 0.91140 1.90669 1.50200 1.52065 1.45714 1.41141 1.51702 1.14085 1.02977 1.19451 0.97356 1.26025 1.06731 0.88316 1.25637 0.95207 0.98089 0.96795 1.69981 1.00962 1.40477 1.35673 0.85983 0.79150 0.80212 0.80243 1.18706 1.20144 1.20156 1.18801 0.91596 0.88589 0.85290 1.21500 1.01523 0.97206 0.96432 1.21144 0.98128 0.98608 0.92807 1.21628 1.08756 0.96384 0.99233 1.22249 0.95497 0.94600 0.92917 1.67593 1.19468 1.34277 0.99747 1.17858 0.83961 0.80977 0.76011 1.90906 1.12223 1.86580 1.55242 1.86255 1.40904 1.13751 1.87026 1.21984 0.90810 0.80872 0.96459 1.22503 1.00784 1.04298 0.96454 1.21833 0.99516 0.95054 1.03116 1.22511 1.00664 1.04445 0.96342 0.92791 0.90789 0.91051 0.87505 0.86533 0.91312 0.84640 0.86722 0.86962 0.84634 0.92168 0.91604 0.89078 0.91706 0.90444 0.91570 0.89202 0.91470 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.44 59.85 0.63 1.90 16 2 N -0.58 -10.68 2.37 -188.81 -0.45 -11.13 16 3 C 0.13 2.62 4.80 -5.19 -0.02 2.60 16 4 C 0.48 11.75 7.65 -10.99 -0.08 11.67 16 5 O -0.51 -13.89 14.71 5.56 0.08 -13.81 16 6 N -0.39 -9.85 2.68 -60.71 -0.16 -10.02 16 7 C -0.37 -8.75 7.67 -14.90 -0.11 -8.86 16 8 H 0.10 2.13 7.36 -52.49 -0.39 1.74 16 9 C 0.05 1.25 3.59 -17.49 -0.06 1.19 16 10 N -0.84 -21.69 11.12 55.49 0.62 -21.07 16 11 Si 0.92 17.95 29.56 -169.99 -5.03 12.93 16 12 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 13 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 15 C 0.39 10.11 6.63 -154.63 -1.02 9.08 16 16 C -0.14 -3.39 7.61 -39.22 -0.30 -3.69 16 17 C -0.08 -1.66 10.17 -39.31 -0.40 -2.06 16 18 C -0.24 -4.66 10.11 -39.40 -0.40 -5.06 16 19 C 0.11 2.33 11.18 -17.56 -0.20 2.13 16 20 N -0.50 -12.91 7.92 -12.34 -0.10 -13.01 16 21 C 0.66 12.83 7.67 54.06 0.41 13.25 16 22 O -0.56 -12.47 11.46 -19.28 -0.22 -12.69 16 23 O -0.36 -6.07 8.71 -40.31 -0.35 -6.42 16 24 C 0.14 1.90 1.13 -90.62 -0.10 1.80 16 25 C -0.18 -2.76 8.37 37.16 0.31 -2.45 16 26 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 27 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.01 7.37 -51.93 -0.38 0.63 16 30 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.11 1.78 7.48 -51.93 -0.39 1.39 16 32 H 0.12 2.48 7.42 -51.93 -0.39 2.09 16 33 H 0.28 6.74 8.32 -40.82 -0.34 6.40 16 34 H 0.14 3.25 5.55 -52.49 -0.29 2.96 16 35 H 0.11 1.98 8.06 -52.48 -0.42 1.55 16 36 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.14 2.54 8.06 -52.49 -0.42 2.11 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.73 5.88 -51.93 -0.31 1.42 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -32.87 376.74 -7.29 -40.16 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.65 Total: 11.06 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: -0.71 Total: 18.32 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.09 Total: -55.23 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.49 Total: -32.92 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -7.29 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.868 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds