Wall clock time and date at job start Tue Mar 31 2020 18:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99634 * 2 1 4 4 C 1.50697 * 109.46989 * 90.00621 * 3 2 1 5 5 O 1.21272 * 120.00050 * 4.88171 * 4 3 2 6 6 N 1.34771 * 119.99859 * 184.88310 * 4 3 2 7 7 C 1.37214 * 120.00462 * 4.96824 * 6 4 3 8 8 H 1.07996 * 119.99485 * 50.15846 * 7 6 4 9 9 C 1.38885 * 120.00250 * 230.16599 * 7 6 4 10 10 N 1.31417 * 120.00234 * 7.35852 * 9 7 6 11 11 Si 1.86800 * 119.99961 * 187.36356 * 9 7 6 12 12 H 1.48493 * 109.47349 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47279 * 120.00067 * 11 9 7 14 14 H 1.48505 * 109.47096 * 239.99663 * 11 9 7 15 15 C 1.39428 * 120.00065 * 184.96884 * 6 4 3 16 16 C 1.39073 * 119.69987 * 185.00078 * 15 6 4 17 17 C 1.38377 * 119.09900 * 180.02562 * 16 15 6 18 18 C 1.38822 * 118.49331 * 359.97438 * 17 16 15 19 19 C 1.38153 * 119.31371 * 0.25348 * 18 17 16 20 20 N 1.31877 * 120.84820 * 359.47890 * 19 18 17 21 21 C 1.34777 * 119.99976 * 180.02562 * 2 1 3 22 22 O 1.21513 * 119.99868 * 180.02562 * 21 2 1 23 23 O 1.34634 * 120.00080 * 359.97438 * 21 2 1 24 24 C 1.45195 * 116.99833 * 180.02562 * 23 21 2 25 25 C 1.53003 * 109.47231 * 60.00428 * 24 23 21 26 26 C 1.53002 * 109.47025 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47723 * 300.00272 * 24 23 21 28 28 H 1.08990 * 109.47165 * 89.99609 * 1 2 3 29 29 H 1.08998 * 109.46896 * 209.99857 * 1 2 3 30 30 H 1.08996 * 109.47116 * 329.99508 * 1 2 3 31 31 H 1.08995 * 109.47105 * 330.00195 * 3 2 1 32 32 H 1.09000 * 109.46652 * 210.00357 * 3 2 1 33 33 H 0.97000 * 120.00038 * 174.99329 * 10 9 7 34 34 H 1.08001 * 120.44599 * 0.04337 * 16 15 6 35 35 H 1.08003 * 120.75223 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.34729 * 179.97438 * 18 17 16 37 37 H 1.07998 * 119.57393 * 179.74706 * 19 18 17 38 38 H 1.09001 * 109.47086 * 59.99797 * 25 24 23 39 39 H 1.09001 * 109.47270 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47254 * 300.00063 * 25 24 23 41 41 H 1.09006 * 109.46677 * 60.00556 * 26 24 23 42 42 H 1.09001 * 109.47246 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47441 * 300.00294 * 26 24 23 44 44 H 1.09002 * 109.46577 * 60.00051 * 27 24 23 45 45 H 1.08993 * 109.47294 * 179.97438 * 27 24 23 46 46 H 1.09002 * 109.46505 * 300.00349 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.1340 0.9796 2.3413 6 7 3.0231 2.8975 1.6685 7 6 3.2861 3.7602 0.6344 8 1 2.5115 3.9999 -0.0790 9 6 4.5483 4.3250 0.5050 10 7 5.5298 3.9256 1.2823 11 14 4.8508 5.6527 -0.7738 12 1 3.5929 5.9211 -1.5158 13 1 5.3030 6.8958 -0.0992 14 1 5.8973 5.1960 -1.7234 15 6 3.3503 3.2559 2.9756 16 6 3.8460 4.5286 3.2375 17 6 4.1672 4.8710 4.5392 18 6 3.9803 3.9252 5.5381 19 6 3.4881 2.6781 5.2051 20 7 3.1858 2.3817 3.9562 21 6 2.1389 -1.1672 -0.0005 22 8 3.3540 -1.1672 -0.0001 23 8 1.4657 -2.3332 -0.0005 24 6 2.2566 -3.5509 -0.0005 25 6 3.1392 -3.5858 1.2488 26 6 1.3246 -4.7642 0.0001 27 6 3.1394 -3.5858 -1.2497 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 -0.5138 32 1 3.1498 1.1385 -0.5139 33 1 6.4273 4.2666 1.1442 34 1 3.9782 5.2402 2.4358 35 1 4.5537 5.8521 4.7729 36 1 4.2215 4.1604 6.5642 37 1 3.3449 1.9377 5.9783 38 1 2.5103 -3.5610 2.1387 39 1 3.7326 -4.5001 1.2490 40 1 3.8032 -2.7213 1.2489 41 1 0.6955 -4.7396 -0.8897 42 1 1.9182 -5.6784 0.0006 43 1 0.6960 -4.7392 0.8903 44 1 3.8033 -2.7214 -1.2496 45 1 3.7333 -4.4997 -1.2494 46 1 2.5105 -3.5609 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892464788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:18 Heat of formation + Delta-G solvation = -65.451277 kcal Electronic energy + Delta-G solvation = -30378.232821 eV Core-core repulsion = 26268.940907 eV Total energy + Delta-G solvation = -4109.291914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96726 -41.39988 -39.78133 -38.31909 -36.94349 -36.43442 -34.83915 -33.93045 -32.77613 -31.34182 -29.40751 -28.37985 -28.27133 -27.42060 -27.10905 -24.50193 -23.80919 -22.79179 -21.19701 -20.44327 -19.73474 -18.87116 -18.34544 -17.69794 -17.41744 -17.10262 -16.79288 -16.43778 -16.23294 -15.94446 -15.85918 -15.35687 -15.32913 -14.96703 -14.64907 -14.44265 -14.34956 -14.04290 -13.67397 -13.46303 -13.38630 -13.27315 -13.17463 -13.09642 -12.95142 -12.85635 -12.84216 -12.65141 -12.48640 -12.38515 -12.27437 -11.98886 -11.38444 -11.20860 -11.08280 -10.99298 -10.68255 -10.43264 -10.00572 -9.53325 -8.81335 -8.23881 -6.40233 0.53393 0.75491 1.07372 1.45171 1.49614 1.63254 1.77615 2.00959 2.26843 2.66300 2.92087 2.96903 3.44567 3.76760 3.79814 3.82255 3.95315 4.12637 4.20244 4.23158 4.26012 4.47819 4.54740 4.56940 4.59871 4.66170 4.69491 4.74774 4.76188 4.77568 4.82314 4.87699 4.88643 5.10343 5.15637 5.27197 5.28669 5.36754 5.39576 5.43234 5.47472 5.58460 5.88495 6.14270 6.30123 6.39762 6.99110 7.14147 7.28996 7.51625 7.97833 8.66462 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.003959 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.073455 B = 7071.552179 C = 8213.492109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.586 5.586 3 C 0.145 3.855 4 C 0.462 3.538 5 O -0.551 6.551 6 N -0.400 5.400 7 C -0.378 4.378 8 H 0.119 0.881 9 C 0.015 3.985 10 N -0.883 5.883 11 Si 0.990 3.010 12 H -0.244 1.244 13 H -0.275 1.275 14 H -0.282 1.282 15 C 0.351 3.649 16 C -0.158 4.158 17 C -0.079 4.079 18 C -0.218 4.218 19 C 0.086 3.914 20 N -0.538 5.538 21 C 0.650 3.350 22 O -0.598 6.598 23 O -0.360 6.360 24 C 0.122 3.878 25 C -0.180 4.180 26 C -0.129 4.129 27 C -0.177 4.177 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.274 0.726 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -6.570 -4.101 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.325 5.325 3 C 0.020 3.980 4 C 0.251 3.749 5 O -0.428 6.428 6 N -0.113 5.113 7 C -0.505 4.505 8 H 0.136 0.864 9 C -0.191 4.191 10 N -0.516 5.516 11 Si 0.811 3.189 12 H -0.166 1.166 13 H -0.201 1.201 14 H -0.208 1.208 15 C 0.122 3.878 16 C -0.182 4.182 17 C -0.105 4.105 18 C -0.240 4.240 19 C -0.072 4.072 20 N -0.254 5.254 21 C 0.405 3.595 22 O -0.489 6.489 23 O -0.275 6.275 24 C 0.086 3.914 25 C -0.237 4.237 26 C -0.186 4.186 27 C -0.234 4.234 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.677 -7.852 -3.881 11.647 hybrid contribution 1.298 1.484 0.001 1.972 sum -6.379 -6.368 -3.880 9.813 Atomic orbital electron populations 1.21923 0.76183 1.03750 1.03488 1.46432 1.08564 1.02280 1.75192 1.21043 0.99574 0.84199 0.93168 1.22047 0.79343 0.80871 0.92655 1.90615 1.51977 1.52979 1.47250 1.41478 1.51659 1.14638 1.03512 1.19954 0.98187 1.25637 1.06689 0.86400 1.26484 0.94541 0.99659 0.98425 1.70139 1.01342 1.42295 1.37780 0.84925 0.79393 0.77027 0.77507 1.16637 1.20059 1.20780 1.19187 0.93242 0.89680 0.85711 1.21551 1.02441 0.96432 0.97819 1.21633 0.96745 1.00447 0.91667 1.22069 1.05902 0.94751 1.01246 1.22851 0.95511 0.96546 0.92268 1.67545 1.20967 1.35563 1.01348 1.18127 0.83708 0.81959 0.75672 1.90895 1.13973 1.87255 1.56739 1.86274 1.41012 1.13622 1.86582 1.22464 0.91842 0.81080 0.96062 1.22457 1.00485 1.03691 0.97072 1.21853 0.99222 0.93728 1.03821 1.22448 1.00389 1.04056 0.96507 0.89254 0.90613 0.90891 0.84072 0.88444 0.91594 0.85509 0.82967 0.82261 0.82167 0.92861 0.88559 0.93643 0.90358 0.87697 0.91522 0.92904 0.88821 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.40 10.44 127.77 1.33 3.73 16 2 N -0.59 -21.87 2.37 -981.67 -2.33 -24.20 16 3 C 0.15 5.96 4.80 85.63 0.41 6.37 16 4 C 0.46 23.77 7.65 87.66 0.67 24.44 16 5 O -0.55 -31.47 14.71 -3.01 -0.04 -31.51 16 6 N -0.40 -21.15 2.68 -464.38 -1.24 -22.39 16 7 C -0.38 -18.25 7.67 84.01 0.64 -17.60 16 8 H 0.12 5.02 7.36 -2.91 -0.02 5.00 16 9 C 0.01 0.71 3.59 84.91 0.30 1.02 16 10 N -0.88 -46.94 11.12 21.65 0.24 -46.69 16 11 Si 0.99 36.68 29.56 68.60 2.03 38.71 16 12 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 13 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 14 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.35 18.90 6.63 132.90 0.88 19.78 16 16 C -0.16 -7.61 7.61 22.50 0.17 -7.44 16 17 C -0.08 -3.12 10.17 22.44 0.23 -2.89 16 18 C -0.22 -8.06 10.11 22.39 0.23 -7.83 16 19 C 0.09 3.76 11.18 84.67 0.95 4.70 16 20 N -0.54 -28.95 7.92 -192.94 -1.53 -30.47 16 21 C 0.65 26.32 7.67 129.79 1.00 27.31 16 22 O -0.60 -28.30 11.46 19.80 0.23 -28.07 16 23 O -0.36 -12.08 8.71 -55.43 -0.48 -12.56 16 24 C 0.12 3.34 1.13 -10.79 -0.01 3.33 16 25 C -0.18 -5.54 8.37 71.98 0.60 -4.94 16 26 C -0.13 -2.31 8.85 71.98 0.64 -1.67 16 27 C -0.18 -4.57 8.37 71.98 0.60 -3.97 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.03 7.37 -2.39 -0.02 2.01 16 30 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 31 H 0.14 4.65 7.48 -2.39 -0.02 4.63 16 32 H 0.10 4.37 7.42 -2.39 -0.02 4.35 16 33 H 0.27 13.80 8.32 -92.71 -0.77 13.03 16 34 H 0.13 6.19 5.55 -2.91 -0.02 6.17 16 35 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.83 5.88 -2.39 -0.01 1.82 16 41 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.79 5.88 -2.39 -0.01 1.78 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -77.67 376.74 6.49 -71.17 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: 0.99 Total: 41.68 kcal Atomic # 6 Polarization: 35.70 SS G_CDS: 8.64 Total: 44.34 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -4.86 Total: -123.76 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -0.30 Total: -72.14 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -77.67 6.49 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.721 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds