Wall clock time and date at job start Tue Mar 31 2020 18:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00048 * 179.97438 * 5 4 3 7 7 O 1.21592 * 120.00119 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99642 * 179.97438 * 6 5 4 9 9 N 1.40093 * 120.00194 * 0.02562 * 8 6 5 10 10 C 1.29800 * 120.00096 * 180.02562 * 9 8 6 11 11 C 1.47376 * 120.00407 * 180.02562 * 10 9 8 12 12 C 1.39816 * 120.06269 * 359.97438 * 11 10 9 13 13 C 1.37777 * 120.01826 * 180.02562 * 12 11 10 14 14 C 1.38958 * 120.13859 * 359.97438 * 13 12 11 15 15 O 1.35705 * 119.92812 * 179.97438 * 14 13 12 16 16 C 1.34786 * 117.00508 * 354.38437 * 15 14 13 17 17 H 1.08004 * 119.99974 * 5.05882 * 16 15 14 18 18 C 1.38616 * 120.00270 * 185.06473 * 16 15 14 19 19 N 1.31582 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47273 * 89.99713 * 20 18 16 22 22 H 1.48493 * 109.47291 * 209.99962 * 20 18 16 23 23 H 1.48499 * 109.46851 * 330.00147 * 20 18 16 24 24 C 1.39525 * 120.13297 * 359.97438 * 14 13 12 25 25 O 1.35943 * 120.00633 * 180.02562 * 24 14 13 26 26 C 1.42900 * 116.99808 * 180.02562 * 25 24 14 27 27 C 1.38196 * 119.98141 * 0.28321 * 24 14 13 28 28 H 1.08994 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47385 * 300.00353 * 1 2 3 30 30 H 1.09005 * 109.46879 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.47674 * 240.00319 * 2 1 3 32 32 H 1.09001 * 109.47058 * 119.99714 * 2 1 3 33 33 H 1.08997 * 109.47314 * 60.00121 * 3 2 1 34 34 H 1.08997 * 109.47587 * 299.99611 * 3 2 1 35 35 H 1.08992 * 109.47440 * 60.00236 * 4 3 2 36 36 H 1.09001 * 109.47252 * 299.99793 * 4 3 2 37 37 H 0.97003 * 119.99966 * 0.02562 * 5 4 3 38 38 H 0.97006 * 119.99605 * 179.97438 * 8 6 5 39 39 H 1.08001 * 119.99906 * 359.97438 * 10 9 8 40 40 H 1.08000 * 119.99506 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.92905 * 179.97438 * 13 12 11 42 42 H 0.97001 * 119.99675 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47452 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47514 * 60.00448 * 26 25 24 45 45 H 1.08998 * 109.47061 * 300.00034 * 26 25 24 46 46 H 1.08002 * 120.07072 * 179.70231 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1735 2.1458 0.0018 8 7 5.8326 4.3407 -0.0001 9 7 4.9223 5.4055 -0.0017 10 6 5.3549 6.6293 -0.0032 11 6 4.3973 7.7495 -0.0043 12 6 3.0223 7.4956 -0.0042 13 6 2.1279 8.5436 -0.0057 14 6 2.5890 9.8544 -0.0069 15 8 1.7042 10.8834 -0.0089 16 6 0.3991 10.5681 -0.1272 17 1 0.0920 9.5326 -0.1327 18 6 -0.5490 11.5727 -0.2421 19 7 -0.1750 12.8342 -0.2350 20 14 -2.3577 11.1357 -0.4068 21 1 -2.9717 11.0519 0.9427 22 1 -3.0495 12.1822 -1.2013 23 1 -2.4898 9.8253 -1.0928 24 6 3.9597 10.1147 -0.0059 25 8 4.4080 11.3981 -0.0065 26 6 5.8240 11.5907 -0.0060 27 6 4.8616 9.0676 -0.0097 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 3.4280 3.5610 -0.0003 38 1 6.7864 4.5180 0.0009 39 1 6.4167 6.8267 -0.0029 40 1 2.6613 6.4778 -0.0029 41 1 1.0662 8.3458 -0.0061 42 1 -0.8386 13.5372 -0.3150 43 1 6.0456 12.6580 -0.0061 44 1 6.2537 11.1301 -0.8956 45 1 6.2528 11.1311 0.8844 46 1 5.9229 9.2674 -0.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920750675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:10 Heat of formation + Delta-G solvation = -39.346599 kcal Electronic energy + Delta-G solvation = -27503.232666 eV Core-core repulsion = 23395.072735 eV Total energy + Delta-G solvation = -4108.159931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.99638 -39.71673 -37.69289 -37.23386 -36.39864 -35.67796 -33.75951 -32.62128 -31.86926 -29.74537 -29.16362 -28.55125 -26.66311 -25.57704 -23.83479 -23.21950 -21.77528 -21.55565 -20.81642 -20.32167 -18.32634 -18.19624 -17.71122 -17.24730 -16.21643 -15.98801 -15.52801 -15.27821 -15.22732 -15.10252 -14.71452 -14.58409 -14.03213 -13.96610 -13.82217 -13.72502 -13.60257 -13.47952 -12.69673 -12.62703 -12.46356 -11.83729 -11.83000 -11.64571 -11.52809 -11.43261 -11.41524 -11.22331 -11.06050 -10.92736 -10.87381 -10.59464 -10.54741 -10.47058 -10.21622 -9.59044 -9.31286 -9.06425 -8.71207 -8.01741 -6.98345 -6.62085 -4.14685 1.22982 2.08836 2.48933 2.67395 3.05013 3.06108 3.10889 3.29048 3.49270 3.82654 3.90575 4.42254 4.54947 4.64455 4.76382 4.81162 4.90744 5.00360 5.09922 5.17209 5.27244 5.35713 5.42728 5.48469 5.49478 5.56945 5.59127 5.67687 5.69952 5.78376 5.82288 5.86877 5.95554 6.01739 6.10860 6.20357 6.41810 6.42149 6.69436 6.81248 6.89540 7.07267 7.14854 7.39158 7.44344 7.78130 8.03215 8.13010 8.58963 8.81312 9.48964 10.53734 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008554 B = 0.002710 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.666326 B =10331.046610 C =13561.966991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.135 3.865 5 N -0.730 5.730 6 C 0.733 3.267 7 O -0.597 6.597 8 N -0.592 5.592 9 N -0.291 5.291 10 C 0.162 3.838 11 C -0.145 4.145 12 C -0.041 4.041 13 C -0.226 4.226 14 C 0.150 3.850 15 O -0.149 6.149 16 C -0.390 4.390 17 H 0.098 0.902 18 C 0.041 3.959 19 N -0.846 5.846 20 Si 0.944 3.056 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C 0.053 3.947 25 O -0.302 6.302 26 C 0.030 3.970 27 C -0.134 4.134 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.394 0.606 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.274 0.726 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -14.640 0.270 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.172 4.172 4 C 0.010 3.990 5 N -0.386 5.386 6 C 0.433 3.567 7 O -0.474 6.474 8 N -0.339 5.339 9 N -0.101 5.101 10 C -0.046 4.046 11 C -0.149 4.149 12 C -0.062 4.062 13 C -0.246 4.246 14 C 0.093 3.907 15 O -0.049 6.049 16 C -0.466 4.466 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.478 5.478 20 Si 0.768 3.232 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.189 1.189 24 C 0.008 3.992 25 O -0.216 6.216 26 C -0.066 4.066 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.235 0.765 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.296 -15.458 0.267 16.342 hybrid contribution 0.422 0.565 -0.070 0.709 sum 5.718 -14.893 0.197 15.954 Atomic orbital electron populations 1.21769 0.95454 1.01702 1.02135 1.21420 0.96156 0.95862 1.02385 1.21846 0.94009 0.98031 1.03278 1.21256 0.93603 0.81983 1.02137 1.45066 1.05583 1.09361 1.78639 1.15399 0.83160 0.81042 0.77119 1.90968 1.55631 1.41434 1.59360 1.46266 1.07279 1.02921 1.77388 1.74456 1.19660 0.97005 1.18978 1.24225 0.97631 0.89856 0.92872 1.17449 0.91856 0.89528 1.16078 1.20852 0.91493 0.98315 0.95553 1.20864 1.00710 0.90775 1.12281 1.18869 0.87489 0.88511 0.95831 1.84018 1.16461 1.29068 1.75361 1.21494 0.78733 0.94738 1.51586 0.88491 1.25394 1.00527 0.94505 0.96109 1.70073 1.35272 0.99132 1.43363 0.85656 0.79885 0.78765 0.78873 1.19647 1.20087 1.18899 1.17969 0.90298 0.83540 1.07421 1.86250 1.22509 1.23142 1.89714 1.22912 0.80808 1.02528 1.00318 1.20666 0.97959 0.91143 1.05753 0.92685 0.92554 0.92559 0.91718 0.91720 0.91020 0.91009 0.91750 0.91744 0.75318 0.76529 0.87381 0.86208 0.84484 0.91626 0.89007 0.93462 0.93482 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.62 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.97 16 3 C -0.13 -1.04 5.33 -26.73 -0.14 -1.19 16 4 C 0.13 1.36 5.67 -4.04 -0.02 1.33 16 5 N -0.73 -8.83 5.52 -65.22 -0.36 -9.19 16 6 C 0.73 10.61 8.68 -86.91 -0.75 9.85 16 7 O -0.60 -10.34 17.18 5.28 0.09 -10.25 16 8 N -0.59 -7.64 6.27 27.64 0.17 -7.47 16 9 N -0.29 -3.85 9.46 32.14 0.30 -3.54 16 10 C 0.16 2.06 10.74 -14.69 -0.16 1.90 16 11 C -0.14 -2.24 5.87 -105.03 -0.62 -2.85 16 12 C -0.04 -0.69 9.57 -39.16 -0.37 -1.07 16 13 C -0.23 -4.47 9.14 -39.48 -0.36 -4.83 16 14 C 0.15 3.42 6.67 -38.84 -0.26 3.16 16 15 O -0.15 -4.05 9.53 -14.31 -0.14 -4.18 16 16 C -0.39 -10.21 9.48 30.87 0.29 -9.91 16 17 H 0.10 2.29 5.19 -52.48 -0.27 2.02 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 20 Si 0.94 19.23 29.55 -169.99 -5.02 14.20 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 24 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 25 O -0.30 -6.05 10.28 -34.18 -0.35 -6.40 16 26 C 0.03 0.40 9.81 101.05 0.99 1.39 16 27 C -0.13 -2.13 8.77 -39.03 -0.34 -2.47 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.41 4.72 7.51 -40.82 -0.31 4.41 16 38 H 0.39 4.38 8.75 -182.60 -1.60 2.78 16 39 H 0.11 1.06 8.02 -52.49 -0.42 0.64 16 40 H 0.12 1.77 7.54 -52.49 -0.40 1.37 16 41 H 0.14 2.66 5.62 -52.49 -0.29 2.37 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 45 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 46 H 0.12 1.54 6.28 -52.49 -0.33 1.21 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -31.98 394.51 -8.27 -40.25 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.78 Total: 8.06 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.90 Total: -4.51 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.88 Total: -43.11 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.40 Total: -20.83 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.98 -8.27 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920750675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.904 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds