Wall clock time and date at job start Tue Mar 31 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53002 * 109.47103 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00048 * 179.97438 * 5 4 3 7 7 O 1.21592 * 120.00119 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99642 * 179.97438 * 6 5 4 9 9 N 1.40093 * 120.00194 * 0.02562 * 8 6 5 10 10 C 1.29800 * 120.00096 * 180.02562 * 9 8 6 11 11 C 1.47376 * 120.00407 * 180.02562 * 10 9 8 12 12 C 1.39816 * 120.06269 * 359.97438 * 11 10 9 13 13 C 1.37777 * 120.01826 * 180.02562 * 12 11 10 14 14 C 1.38958 * 120.13859 * 359.97438 * 13 12 11 15 15 O 1.35705 * 119.92812 * 179.97438 * 14 13 12 16 16 C 1.34786 * 117.00508 * 354.38437 * 15 14 13 17 17 H 1.08004 * 119.99974 * 5.05882 * 16 15 14 18 18 C 1.38616 * 120.00270 * 185.06473 * 16 15 14 19 19 N 1.31582 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47273 * 89.99713 * 20 18 16 22 22 H 1.48493 * 109.47291 * 209.99962 * 20 18 16 23 23 H 1.48499 * 109.46851 * 330.00147 * 20 18 16 24 24 C 1.39525 * 120.13297 * 359.97438 * 14 13 12 25 25 O 1.35943 * 120.00633 * 180.02562 * 24 14 13 26 26 C 1.42900 * 116.99808 * 180.02562 * 25 24 14 27 27 C 1.38196 * 119.98141 * 0.28321 * 24 14 13 28 28 H 1.08994 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47385 * 300.00353 * 1 2 3 30 30 H 1.09005 * 109.46879 * 59.99808 * 1 2 3 31 31 H 1.09001 * 109.47674 * 240.00319 * 2 1 3 32 32 H 1.09001 * 109.47058 * 119.99714 * 2 1 3 33 33 H 1.08997 * 109.47314 * 60.00121 * 3 2 1 34 34 H 1.08997 * 109.47587 * 299.99611 * 3 2 1 35 35 H 1.08992 * 109.47440 * 60.00236 * 4 3 2 36 36 H 1.09001 * 109.47252 * 299.99793 * 4 3 2 37 37 H 0.97003 * 119.99966 * 0.02562 * 5 4 3 38 38 H 0.97006 * 119.99605 * 179.97438 * 8 6 5 39 39 H 1.08001 * 119.99906 * 359.97438 * 10 9 8 40 40 H 1.08000 * 119.99506 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.92905 * 179.97438 * 13 12 11 42 42 H 0.97001 * 119.99675 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47452 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47514 * 60.00448 * 26 25 24 45 45 H 1.08998 * 109.47061 * 300.00034 * 26 25 24 46 46 H 1.08002 * 120.07072 * 179.70231 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1735 2.1458 0.0018 8 7 5.8326 4.3407 -0.0001 9 7 4.9223 5.4055 -0.0017 10 6 5.3549 6.6293 -0.0032 11 6 4.3973 7.7495 -0.0043 12 6 3.0223 7.4956 -0.0042 13 6 2.1279 8.5436 -0.0057 14 6 2.5890 9.8544 -0.0069 15 8 1.7042 10.8834 -0.0089 16 6 0.3991 10.5681 -0.1272 17 1 0.0920 9.5326 -0.1327 18 6 -0.5490 11.5727 -0.2421 19 7 -0.1750 12.8342 -0.2350 20 14 -2.3577 11.1357 -0.4068 21 1 -2.9717 11.0519 0.9427 22 1 -3.0495 12.1822 -1.2013 23 1 -2.4898 9.8253 -1.0928 24 6 3.9597 10.1147 -0.0059 25 8 4.4080 11.3981 -0.0065 26 6 5.8240 11.5907 -0.0060 27 6 4.8616 9.0676 -0.0097 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 3.4280 3.5610 -0.0003 38 1 6.7864 4.5180 0.0009 39 1 6.4167 6.8267 -0.0029 40 1 2.6613 6.4778 -0.0029 41 1 1.0662 8.3458 -0.0061 42 1 -0.8386 13.5372 -0.3150 43 1 6.0456 12.6580 -0.0061 44 1 6.2537 11.1301 -0.8956 45 1 6.2528 11.1311 0.8844 46 1 5.9229 9.2674 -0.0139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920750675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:09 Heat of formation + Delta-G solvation = -61.166817 kcal Electronic energy + Delta-G solvation = -27504.178862 eV Core-core repulsion = 23395.072735 eV Total energy + Delta-G solvation = -4109.106126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25823 -41.05196 -39.24570 -38.48493 -37.28054 -36.95471 -34.63251 -34.32685 -33.13423 -31.18068 -30.34252 -29.47622 -27.84481 -27.34945 -24.75328 -24.37971 -23.23376 -22.29102 -21.92802 -21.47645 -19.90620 -19.42034 -19.04076 -18.59300 -17.34159 -17.05977 -16.94852 -16.60043 -16.28043 -16.20609 -16.11860 -15.70160 -15.48412 -15.22793 -15.21445 -14.95285 -14.47803 -14.45831 -13.94433 -13.84484 -13.47076 -13.26716 -12.99791 -12.96255 -12.69598 -12.56406 -12.46075 -12.17736 -12.11867 -12.03657 -11.98768 -11.84661 -11.59278 -11.49546 -11.47453 -11.14935 -10.84941 -10.36580 -9.93326 -9.38020 -8.51288 -8.44207 -6.08797 -0.04971 0.61916 1.35746 1.39004 1.42807 1.52236 1.56543 2.14404 2.19563 2.47530 2.64609 2.88441 3.18654 3.41736 3.79879 3.87086 4.00115 4.02902 4.18554 4.31968 4.34331 4.41592 4.46114 4.52546 4.53972 4.63475 4.65625 4.71839 4.80134 4.83629 4.94835 4.94878 4.98684 5.06919 5.15437 5.25910 5.37224 5.39960 5.44350 5.49010 5.54477 5.64218 5.75296 5.95636 6.01922 6.30239 6.68201 6.99322 7.08367 7.51091 7.79629 8.77618 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008554 B = 0.002710 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.666326 B =10331.046610 C =13561.966991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.133 3.867 5 N -0.724 5.724 6 C 0.726 3.274 7 O -0.627 6.627 8 N -0.584 5.584 9 N -0.287 5.287 10 C 0.163 3.837 11 C -0.111 4.111 12 C -0.052 4.052 13 C -0.221 4.221 14 C 0.104 3.896 15 O -0.213 6.213 16 C -0.412 4.412 17 H 0.108 0.892 18 C -0.022 4.022 19 N -0.915 5.915 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.249 1.249 24 C 0.039 3.961 25 O -0.345 6.345 26 C 0.018 3.982 27 C -0.118 4.118 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.414 0.586 38 H 0.406 0.594 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.272 0.728 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 -17.831 0.235 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.163 4.163 4 C 0.009 3.991 5 N -0.379 5.379 6 C 0.426 3.574 7 O -0.506 6.506 8 N -0.331 5.331 9 N -0.096 5.096 10 C -0.046 4.046 11 C -0.114 4.114 12 C -0.072 4.072 13 C -0.241 4.241 14 C 0.051 3.949 15 O -0.118 6.118 16 C -0.488 4.488 17 H 0.125 0.875 18 C -0.220 4.220 19 N -0.553 5.553 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.173 1.173 24 C -0.006 4.006 25 O -0.260 6.260 26 C -0.076 4.076 27 C -0.139 4.139 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.248 0.752 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.372 -18.717 0.236 20.118 hybrid contribution 0.304 1.126 -0.038 1.167 sum 7.677 -17.590 0.197 19.194 Atomic orbital electron populations 1.21769 0.95119 1.02152 1.02028 1.21418 0.96384 0.95167 1.02729 1.21788 0.92246 0.98821 1.03422 1.21369 0.95002 0.80944 1.01743 1.45149 1.04927 1.10316 1.77548 1.15591 0.83591 0.81095 0.77103 1.90954 1.56530 1.42377 1.60783 1.46132 1.07834 1.02260 1.76825 1.74392 1.20526 0.97520 1.17204 1.24238 0.99035 0.88597 0.92759 1.17821 0.91892 0.90564 1.11140 1.21114 0.91926 0.98490 0.95685 1.20999 1.01207 0.90685 1.11185 1.19588 0.88663 0.89092 0.97554 1.84004 1.16984 1.30960 1.79885 1.21925 0.79359 0.95416 1.52077 0.87463 1.26606 1.05341 0.94221 0.95820 1.70226 1.36680 1.00428 1.47929 0.84596 0.73670 0.78921 0.79124 1.18842 1.19914 1.17257 1.18314 0.89991 0.84841 1.07424 1.86209 1.26376 1.23511 1.89872 1.23301 0.77724 1.04161 1.02404 1.21094 0.99584 0.89973 1.03211 0.92019 0.92654 0.92673 0.91418 0.91407 0.90834 0.90844 0.92151 0.92129 0.74861 0.75220 0.82909 0.83839 0.85131 0.91853 0.87738 0.91199 0.91146 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.38 5.93 30.59 0.18 -1.20 16 3 C -0.12 -1.68 5.33 30.60 0.16 -1.52 16 4 C 0.13 2.42 5.67 86.38 0.49 2.91 16 5 N -0.72 -15.55 5.52 -478.53 -2.64 -18.19 16 6 C 0.73 18.88 8.68 179.05 1.55 20.43 16 7 O -0.63 -20.34 17.18 -4.01 -0.07 -20.41 16 8 N -0.58 -12.58 6.27 -184.74 -1.16 -13.74 16 9 N -0.29 -6.19 9.46 -52.22 -0.49 -6.68 16 10 C 0.16 3.18 10.74 87.40 0.94 4.12 16 11 C -0.11 -2.94 5.87 -20.13 -0.12 -3.06 16 12 C -0.05 -1.60 9.57 22.54 0.22 -1.39 16 13 C -0.22 -8.80 9.14 22.33 0.20 -8.60 16 14 C 0.10 4.90 6.67 22.75 0.15 5.05 16 15 O -0.21 -12.50 9.53 -7.82 -0.07 -12.58 16 16 C -0.41 -23.09 9.48 67.91 0.64 -22.45 16 17 H 0.11 5.39 5.19 -2.91 -0.02 5.38 16 18 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 19 N -0.92 -55.38 13.67 21.61 0.30 -55.08 16 20 Si 1.02 41.40 29.55 68.60 2.03 43.43 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 24 C 0.04 1.56 6.70 22.57 0.15 1.71 16 25 O -0.34 -13.93 10.28 -78.93 -0.81 -14.74 16 26 C 0.02 0.45 9.81 113.37 1.11 1.56 16 27 C -0.12 -3.31 8.77 22.62 0.20 -3.11 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 8.21 7.51 -92.71 -0.70 7.51 16 38 H 0.41 7.12 8.75 -213.32 -1.87 5.25 16 39 H 0.15 1.81 8.02 -2.91 -0.02 1.78 16 40 H 0.14 3.75 7.54 -2.91 -0.02 3.73 16 41 H 0.13 5.24 5.62 -2.91 -0.02 5.23 16 42 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 1.36 7.65 -2.39 -0.02 1.35 16 45 H 0.07 1.36 7.67 -2.39 -0.02 1.35 16 46 H 0.17 3.18 6.28 -2.91 -0.02 3.16 16 Total: -1.00 -77.33 394.51 2.60 -74.73 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.54 Total: 30.51 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 7.07 Total: -7.25 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.00 Total: -93.69 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.95 Total: -47.73 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -77.33 2.60 -74.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920750675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.561 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds