Wall clock time and date at job start Tue Mar 31 2020 19:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46848 * 111.00109 * 45.79068 * 4 3 2 6 6 C 1.53036 * 109.52325 * 185.83663 * 5 4 3 7 7 C 1.53123 * 109.27910 * 300.81822 * 6 5 4 8 8 N 1.46496 * 109.52204 * 177.56054 * 7 6 5 9 9 C 1.34777 * 120.00171 * 85.31937 * 8 7 6 10 10 O 1.21583 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00053 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47338 * 34.98949 * 12 11 9 14 14 C 1.50696 * 109.47477 * 154.99687 * 12 11 9 15 15 H 1.08002 * 119.99936 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00081 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00121 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99793 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47258 * 119.99938 * 18 16 14 21 21 H 1.48505 * 109.46979 * 239.99715 * 18 16 14 22 22 C 1.53000 * 109.46868 * 274.99580 * 12 11 9 23 23 F 1.39899 * 109.47371 * 59.99913 * 22 12 11 24 24 F 1.39899 * 109.47295 * 180.02562 * 22 12 11 25 25 F 1.39901 * 109.47052 * 299.99757 * 22 12 11 26 26 C 1.53121 * 109.15709 * 57.65405 * 7 6 5 27 27 C 1.46849 * 110.99649 * 169.99608 * 4 3 2 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 32 32 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 33 33 H 1.08997 * 109.46035 * 305.85174 * 5 4 3 34 34 H 1.09006 * 109.46342 * 65.82071 * 5 4 3 35 35 H 1.09005 * 109.50033 * 180.87700 * 6 5 4 36 36 H 1.09001 * 109.50223 * 60.76533 * 6 5 4 37 37 H 1.09003 * 109.57644 * 297.71898 * 7 6 5 38 38 H 0.97003 * 119.99758 * 265.32115 * 8 7 6 39 39 H 0.97000 * 120.00155 * 359.97438 * 11 9 8 40 40 H 0.97004 * 120.00178 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.50276 * 182.40062 * 26 7 6 42 42 H 1.09001 * 109.53434 * 62.30918 * 26 7 6 43 43 H 1.09001 * 109.46678 * 294.17655 * 27 4 3 44 44 H 1.09006 * 109.46228 * 54.16086 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 7 6.3392 1.3020 3.6989 9 6 7.4570 0.5593 3.8223 10 8 7.8198 -0.1503 2.9040 11 7 8.1722 0.6023 4.9638 12 6 9.3875 -0.2046 5.0977 13 1 9.8958 -0.2584 4.1350 14 6 10.3020 0.4293 6.1140 15 1 10.0076 1.3422 6.6103 16 6 11.5146 -0.1562 6.4103 17 7 11.8729 -1.2682 5.8064 18 14 12.6484 0.6299 7.6696 19 1 12.0181 1.8653 8.2003 20 1 12.8871 -0.3225 8.7836 21 1 13.9420 0.9723 7.0254 22 6 9.0148 -1.6156 5.5570 23 9 8.1658 -2.2042 4.6136 24 9 10.1754 -2.3861 5.6854 25 9 8.3623 -1.5467 6.7926 26 6 4.7688 2.5555 2.3013 27 6 3.9122 2.4755 1.0357 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6213 1.4026 -0.9314 32 1 1.3585 2.1317 0.0896 33 1 3.0301 -0.7630 1.2786 34 1 4.3823 -0.0478 0.3688 35 1 5.1468 -0.8572 2.5788 36 1 3.9389 0.1763 3.3810 37 1 6.2356 1.1345 1.6102 38 1 6.0495 1.8679 4.4316 39 1 7.8825 1.1681 5.6966 40 1 12.7262 -1.6799 6.0145 41 1 5.4593 3.3950 2.2210 42 1 4.1241 2.6963 3.1689 43 1 4.5585 2.3492 0.1671 44 1 3.3357 3.3945 0.9290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932918119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:07 Heat of formation + Delta-G solvation = -140.798389 kcal Electronic energy + Delta-G solvation = -30208.892203 eV Core-core repulsion = 25554.476252 eV Total energy + Delta-G solvation = -4654.415951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.28785 -45.93973 -45.55942 -39.91249 -38.74453 -35.84632 -34.51217 -33.54980 -32.54424 -31.01776 -30.80703 -28.12682 -25.91321 -24.52354 -23.52540 -23.00324 -21.46488 -20.28524 -20.06169 -19.52852 -18.22994 -16.98179 -16.76576 -16.57736 -16.54242 -15.97308 -15.43160 -15.29494 -15.20144 -14.77701 -14.42987 -14.18226 -13.88541 -13.59949 -13.44183 -13.09614 -12.99755 -12.85062 -12.48312 -12.40239 -12.33847 -12.24076 -11.98075 -11.92938 -11.77294 -11.54992 -11.35018 -11.22970 -11.12483 -10.84892 -10.82249 -10.62717 -10.50671 -10.37873 -9.83271 -9.61679 -9.48101 -8.74377 -8.69148 -8.47819 -8.12471 -6.21798 -4.45354 1.94957 3.17864 3.19570 3.26775 3.31018 3.77734 3.82256 4.20340 4.48134 4.60605 4.65561 4.78109 4.83171 4.89741 4.95814 4.97868 5.11488 5.22260 5.24432 5.40654 5.44551 5.53936 5.57244 5.59032 5.70025 5.87080 5.88819 5.93302 5.96569 6.15925 6.26814 6.29984 6.34705 6.44290 6.82359 6.88366 6.89422 6.91066 7.25427 7.41287 7.64773 7.73398 8.52085 8.71138 9.17957 9.29765 10.69770 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002622 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.553674 B =10676.252370 C =11307.275884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.081 3.919 4 N -0.535 5.535 5 C 0.054 3.946 6 C -0.128 4.128 7 C 0.166 3.834 8 N -0.749 5.749 9 C 0.699 3.301 10 O -0.585 6.585 11 N -0.727 5.727 12 C 0.263 3.737 13 H 0.084 0.916 14 C -0.550 4.550 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.416 3.584 23 F -0.217 7.217 24 F -0.138 7.138 25 F -0.211 7.211 26 C -0.123 4.123 27 C 0.060 3.940 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.392 0.608 39 H 0.394 0.606 40 H 0.267 0.733 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.174 6.819 -7.744 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.174 4.174 3 C -0.046 4.046 4 N -0.260 5.260 5 C -0.074 4.074 6 C -0.167 4.167 7 C 0.060 3.940 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.462 6.462 11 N -0.380 5.380 12 C 0.156 3.844 13 H 0.102 0.898 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.359 3.641 23 F -0.199 7.199 24 F -0.119 7.119 25 F -0.193 7.193 26 C -0.161 4.161 27 C -0.069 4.069 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.894 6.023 -8.186 19.715 hybrid contribution 0.682 0.354 0.761 1.081 sum -16.212 6.377 -7.425 18.938 Atomic orbital electron populations 1.23822 0.95783 1.01890 1.00536 1.22974 0.96135 0.98241 1.00044 1.21248 0.95140 0.96163 0.92075 1.62129 1.18942 1.03282 1.41647 1.22180 0.95913 0.91843 0.97490 1.22030 0.97265 0.99757 0.97692 1.20720 0.91731 0.94161 0.87354 1.45161 1.26984 1.49897 1.18402 1.16090 0.79849 0.80504 0.83682 1.90905 1.71246 1.44100 1.39966 1.45274 1.28153 1.48964 1.15595 1.19579 0.81479 0.82525 1.00787 0.89815 1.20919 1.01803 1.11412 1.24630 0.90479 1.25086 0.98067 0.94496 0.96825 1.70420 1.20779 1.15986 1.40095 0.86162 0.80026 0.79240 0.80393 1.19439 1.20590 1.20595 1.23183 0.74332 0.92757 0.73800 1.93070 1.73479 1.87182 1.66120 1.93400 1.45336 1.77783 1.95383 1.92981 1.82671 1.97043 1.46560 1.21859 0.98195 0.97339 0.98712 1.22032 0.93967 0.93974 0.96903 0.88394 0.88535 0.87000 0.93940 0.90280 0.90041 0.94575 0.90479 0.91107 0.89851 0.77487 0.77291 0.92208 0.90748 0.90542 0.94478 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 14.32 29.02 0.42 -0.89 16 2 C -0.16 -1.26 8.56 -36.02 -0.31 -1.57 16 3 C 0.08 0.67 5.72 -4.97 -0.03 0.64 16 4 N -0.54 -5.22 4.80 -236.11 -1.13 -6.35 16 5 C 0.05 0.59 5.00 -3.83 -0.02 0.57 16 6 C -0.13 -1.66 5.67 -26.65 -0.15 -1.81 16 7 C 0.17 2.17 2.52 -67.81 -0.17 2.00 16 8 N -0.75 -10.97 5.08 -58.55 -0.30 -11.27 16 9 C 0.70 13.97 8.07 -86.92 -0.70 13.27 16 10 O -0.58 -14.05 14.57 5.29 0.08 -13.97 16 11 N -0.73 -14.98 4.99 -59.82 -0.30 -15.28 16 12 C 0.26 6.59 2.21 -69.09 -0.15 6.44 16 13 H 0.08 2.37 7.58 -51.93 -0.39 1.97 16 14 C -0.55 -14.08 8.46 -34.44 -0.29 -14.37 16 15 H 0.08 1.86 7.74 -52.49 -0.41 1.46 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -23.15 9.50 55.43 0.53 -22.62 16 18 Si 0.92 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 22 C 0.42 10.82 2.81 37.16 0.10 10.93 16 23 F -0.22 -5.63 15.67 2.25 0.04 -5.59 16 24 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 25 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 26 C -0.12 -1.19 5.57 -26.65 -0.15 -1.33 16 27 C 0.06 0.53 5.42 -3.83 -0.02 0.51 16 28 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 29 H 0.10 0.61 7.84 -52.48 -0.41 0.20 16 30 H 0.11 0.91 6.47 -52.49 -0.34 0.57 16 31 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 33 H 0.08 0.83 5.79 -51.93 -0.30 0.53 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 38 H 0.39 4.60 8.62 -40.82 -0.35 4.25 16 39 H 0.39 6.95 8.55 -40.82 -0.35 6.60 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -30.82 364.25 -8.41 -39.22 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.29 Total: 8.37 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -1.57 Total: 15.96 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.20 Total: -55.52 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.82 -8.41 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.574 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds