Wall clock time and date at job start Tue Mar 31 2020 19:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46848 * 111.00109 * 45.79068 * 4 3 2 6 6 C 1.53036 * 109.52325 * 185.83663 * 5 4 3 7 7 C 1.53123 * 109.27910 * 300.81822 * 6 5 4 8 8 N 1.46496 * 109.52204 * 177.56054 * 7 6 5 9 9 C 1.34777 * 120.00171 * 85.31937 * 8 7 6 10 10 O 1.21583 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00113 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00053 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47338 * 34.98949 * 12 11 9 14 14 C 1.50696 * 109.47477 * 154.99687 * 12 11 9 15 15 H 1.08002 * 119.99936 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00081 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00121 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99793 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47258 * 119.99938 * 18 16 14 21 21 H 1.48505 * 109.46979 * 239.99715 * 18 16 14 22 22 C 1.53000 * 109.46868 * 274.99580 * 12 11 9 23 23 F 1.39899 * 109.47371 * 59.99913 * 22 12 11 24 24 F 1.39899 * 109.47295 * 180.02562 * 22 12 11 25 25 F 1.39901 * 109.47052 * 299.99757 * 22 12 11 26 26 C 1.53121 * 109.15709 * 57.65405 * 7 6 5 27 27 C 1.46849 * 110.99649 * 169.99608 * 4 3 2 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 32 32 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 33 33 H 1.08997 * 109.46035 * 305.85174 * 5 4 3 34 34 H 1.09006 * 109.46342 * 65.82071 * 5 4 3 35 35 H 1.09005 * 109.50033 * 180.87700 * 6 5 4 36 36 H 1.09001 * 109.50223 * 60.76533 * 6 5 4 37 37 H 1.09003 * 109.57644 * 297.71898 * 7 6 5 38 38 H 0.97003 * 119.99758 * 265.32115 * 8 7 6 39 39 H 0.97000 * 120.00155 * 359.97438 * 11 9 8 40 40 H 0.97004 * 120.00178 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.50276 * 182.40062 * 26 7 6 42 42 H 1.09001 * 109.53434 * 62.30918 * 26 7 6 43 43 H 1.09001 * 109.46678 * 294.17655 * 27 4 3 44 44 H 1.09006 * 109.46228 * 54.16086 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 7 6.3392 1.3020 3.6989 9 6 7.4570 0.5593 3.8223 10 8 7.8198 -0.1503 2.9040 11 7 8.1722 0.6023 4.9638 12 6 9.3875 -0.2046 5.0977 13 1 9.8958 -0.2584 4.1350 14 6 10.3020 0.4293 6.1140 15 1 10.0076 1.3422 6.6103 16 6 11.5146 -0.1562 6.4103 17 7 11.8729 -1.2682 5.8064 18 14 12.6484 0.6299 7.6696 19 1 12.0181 1.8653 8.2003 20 1 12.8871 -0.3225 8.7836 21 1 13.9420 0.9723 7.0254 22 6 9.0148 -1.6156 5.5570 23 9 8.1658 -2.2042 4.6136 24 9 10.1754 -2.3861 5.6854 25 9 8.3623 -1.5467 6.7926 26 6 4.7688 2.5555 2.3013 27 6 3.9122 2.4755 1.0357 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.6213 1.4026 -0.9314 32 1 1.3585 2.1317 0.0896 33 1 3.0301 -0.7630 1.2786 34 1 4.3823 -0.0478 0.3688 35 1 5.1468 -0.8572 2.5788 36 1 3.9389 0.1763 3.3810 37 1 6.2356 1.1345 1.6102 38 1 6.0495 1.8679 4.4316 39 1 7.8825 1.1681 5.6966 40 1 12.7262 -1.6799 6.0145 41 1 5.4593 3.3950 2.2210 42 1 4.1241 2.6963 3.1689 43 1 4.5585 2.3492 0.1671 44 1 3.3357 3.3945 0.9290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932918119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:06 Heat of formation + Delta-G solvation = -162.367182 kcal Electronic energy + Delta-G solvation = -30209.827496 eV Core-core repulsion = 25554.476252 eV Total energy + Delta-G solvation = -4655.351244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39568 -48.02959 -47.70968 -41.21882 -39.89053 -37.00632 -36.19695 -34.68405 -34.27044 -32.05823 -31.76846 -29.87628 -26.81573 -26.51898 -24.39181 -24.16048 -23.12300 -21.77055 -21.17821 -20.24236 -19.86439 -18.86551 -18.75108 -18.53437 -17.97809 -17.31491 -16.89467 -16.49706 -16.25893 -16.00828 -15.80265 -15.41376 -15.09671 -14.97707 -14.93596 -14.65947 -14.50270 -14.44094 -14.28405 -14.09811 -14.01145 -13.85798 -13.82496 -13.22812 -13.00777 -12.79474 -12.73668 -12.64381 -12.29379 -12.20815 -12.17850 -12.08175 -11.64193 -11.51994 -11.40441 -11.17803 -10.69085 -10.43569 -10.25211 -9.74633 -9.23282 -8.20278 -6.51014 1.37011 1.46595 1.47742 1.60298 1.75055 2.16883 2.37786 2.58106 2.95476 3.02508 3.31823 3.73519 3.80500 3.81935 3.90103 4.00880 4.09055 4.20984 4.22881 4.27397 4.40450 4.47170 4.56818 4.64507 4.72755 4.79466 4.88509 4.90031 4.96266 5.04143 5.08135 5.18591 5.28989 5.45863 5.53842 5.64053 5.66853 5.73412 5.85486 6.06011 6.14004 6.18396 6.54725 7.17917 7.23984 7.69174 8.72717 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.002622 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.553674 B =10676.252370 C =11307.275884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C 0.082 3.918 4 N -0.538 5.538 5 C 0.061 3.939 6 C -0.122 4.122 7 C 0.163 3.837 8 N -0.726 5.726 9 C 0.695 3.305 10 O -0.629 6.629 11 N -0.721 5.721 12 C 0.272 3.728 13 H 0.044 0.956 14 C -0.559 4.559 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.875 5.875 18 Si 0.985 3.015 19 H -0.254 1.254 20 H -0.282 1.282 21 H -0.278 1.278 22 C 0.412 3.588 23 F -0.219 7.219 24 F -0.151 7.151 25 F -0.204 7.204 26 C -0.111 4.111 27 C 0.059 3.941 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.410 0.590 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.032 0.968 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 9.189 -6.904 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C -0.045 4.045 4 N -0.263 5.263 5 C -0.067 4.067 6 C -0.161 4.161 7 C 0.058 3.942 8 N -0.382 5.382 9 C 0.395 3.605 10 O -0.510 6.510 11 N -0.375 5.375 12 C 0.163 3.837 13 H 0.062 0.938 14 C -0.596 4.596 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.178 1.178 20 H -0.207 1.207 21 H -0.204 1.204 22 C 0.356 3.644 23 F -0.201 7.201 24 F -0.133 7.133 25 F -0.185 7.185 26 C -0.149 4.149 27 C -0.070 4.070 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.246 0.754 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.631 8.451 -7.332 21.732 hybrid contribution 1.102 -0.414 0.436 1.256 sum -17.529 8.037 -6.896 20.479 Atomic orbital electron populations 1.24003 0.95487 1.02824 0.98804 1.22993 0.96622 0.98056 1.01654 1.21297 0.94962 0.96738 0.91465 1.62148 1.18885 1.02634 1.42639 1.22046 0.95659 0.93179 0.95840 1.21919 0.97136 0.97922 0.99156 1.20886 0.91301 0.96512 0.85495 1.44999 1.25118 1.48498 1.19603 1.16283 0.80770 0.80609 0.82825 1.90877 1.72603 1.46121 1.41391 1.45003 1.27179 1.48788 1.16540 1.19150 0.82963 0.82723 0.98822 0.93793 1.21255 1.01965 1.11847 1.24490 0.88899 1.26025 0.99644 0.94865 0.98693 1.70551 1.21311 1.17503 1.41604 0.85091 0.77830 0.78673 0.77584 1.17759 1.20742 1.20362 1.23377 0.73956 0.93085 0.74009 1.93061 1.73487 1.87307 1.66291 1.93372 1.46192 1.78223 1.95474 1.92979 1.82464 1.97021 1.46081 1.21805 0.98130 0.95207 0.99759 1.22112 0.94023 0.94662 0.96161 0.87688 0.87407 0.87678 0.93867 0.88842 0.89477 0.95578 0.94080 0.90516 0.92520 0.75291 0.75383 0.92203 0.89523 0.89222 0.94958 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 14.32 67.78 0.97 -1.16 16 2 C -0.18 -2.60 8.56 25.65 0.22 -2.38 16 3 C 0.08 1.19 5.72 85.56 0.49 1.68 16 4 N -0.54 -9.53 4.80 -900.90 -4.32 -13.85 16 5 C 0.06 1.32 5.00 86.33 0.43 1.75 16 6 C -0.12 -3.18 5.67 30.65 0.17 -3.01 16 7 C 0.16 4.20 2.52 45.07 0.11 4.32 16 8 N -0.73 -20.73 5.08 -457.43 -2.33 -23.05 16 9 C 0.70 28.12 8.07 179.05 1.44 29.57 16 10 O -0.63 -31.44 14.57 -3.98 -0.06 -31.50 16 11 N -0.72 -29.65 4.99 -461.43 -2.30 -31.96 16 12 C 0.27 13.87 2.21 44.24 0.10 13.96 16 13 H 0.04 2.61 7.58 -2.39 -0.02 2.59 16 14 C -0.56 -28.35 8.46 25.60 0.22 -28.13 16 15 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 16 C 0.01 0.66 5.20 84.66 0.44 1.11 16 17 N -0.88 -49.05 9.50 21.45 0.20 -48.84 16 18 Si 0.98 40.63 29.54 68.60 2.03 42.66 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.41 21.86 2.81 71.98 0.20 22.07 16 23 F -0.22 -11.74 15.67 44.97 0.70 -11.03 16 24 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 25 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 26 C -0.11 -1.88 5.57 30.65 0.17 -1.71 16 27 C 0.06 0.91 5.42 86.33 0.47 1.38 16 28 H 0.10 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.11 1.07 7.84 -2.91 -0.02 1.05 16 30 H 0.11 1.66 6.47 -2.91 -0.02 1.65 16 31 H 0.04 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.09 1.11 7.79 -2.39 -0.02 1.09 16 33 H 0.09 1.77 5.79 -2.39 -0.01 1.76 16 34 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.79 7.58 -2.39 -0.02 1.78 16 38 H 0.41 8.76 8.62 -92.71 -0.80 7.96 16 39 H 0.41 13.93 8.55 -92.71 -0.79 13.14 16 40 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 1.16 8.12 -2.38 -0.02 1.14 16 Total: -1.00 -67.87 364.25 0.15 -67.71 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.55 Total: 27.94 kcal Atomic # 6 Polarization: 34.01 SS G_CDS: 5.44 Total: 39.45 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -8.75 Total: -117.70 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.06 Total: -31.50 kcal Atomic # 9 Polarization: -30.60 SS G_CDS: 2.05 Total: -28.55 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -67.87 0.15 -67.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.652 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds