Wall clock time and date at job start Tue Mar 31 2020 18:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47140 * 2 1 4 4 H 1.09001 * 109.49320 * 55.06623 * 3 2 1 5 5 C 1.53189 * 109.49889 * 295.00553 * 3 2 1 6 6 N 1.46922 * 108.77578 * 185.41115 * 5 3 2 7 7 C 1.34783 * 120.63224 * 233.58419 * 6 5 3 8 8 O 1.21603 * 119.99546 * 356.30274 * 7 6 5 9 9 C 1.47484 * 120.00237 * 176.30318 * 7 6 5 10 10 C 1.37818 * 126.77386 * 42.86241 * 9 7 6 11 11 O 1.33498 * 108.34394 * 179.89091 * 10 9 7 12 12 C 1.34882 * 109.88583 * 0.38287 * 11 10 9 13 13 C 1.46774 * 125.65361 * 179.79525 * 12 11 10 14 14 N 1.34774 * 119.99824 * 359.96231 * 13 12 11 15 15 O 1.21677 * 119.99888 * 179.97438 * 13 12 11 16 16 C 1.36058 * 108.69051 * 359.76675 * 12 11 10 17 17 C 1.46929 * 118.73907 * 53.60513 * 6 5 3 18 18 C 1.53182 * 108.77658 * 306.39346 * 17 6 5 19 19 C 1.53040 * 109.31604 * 54.63488 * 18 17 6 20 20 H 1.09004 * 109.46414 * 178.61853 * 19 18 17 21 21 N 1.46501 * 109.46265 * 58.65316 * 19 18 17 22 22 C 1.36935 * 119.99549 * 84.93388 * 21 19 18 23 23 H 1.07998 * 120.00335 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99697 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00006 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00034 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47071 * 90.00013 * 26 24 22 28 28 H 1.48495 * 109.47150 * 210.00158 * 26 24 22 29 29 H 1.48500 * 109.47284 * 330.00298 * 26 24 22 30 30 H 1.08995 * 109.47245 * 59.99357 * 1 2 3 31 31 H 1.09006 * 109.47028 * 299.99447 * 1 2 3 32 32 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47600 * 119.99956 * 2 1 3 34 34 H 1.08997 * 109.47197 * 240.00538 * 2 1 3 35 35 H 1.08998 * 109.58649 * 305.19981 * 5 3 2 36 36 H 1.08999 * 109.58854 * 65.62516 * 5 3 2 37 37 H 1.07996 * 125.82368 * 0.02562 * 10 9 7 38 38 H 0.97001 * 120.00193 * 359.97438 * 14 13 12 39 39 H 0.97001 * 120.00115 * 180.02562 * 14 13 12 40 40 H 1.08006 * 126.68660 * 179.97438 * 16 12 11 41 41 H 1.09000 * 109.58413 * 66.18366 * 17 6 5 42 42 H 1.08999 * 109.58633 * 186.60215 * 17 6 5 43 43 H 1.08998 * 109.50371 * 174.58807 * 18 17 6 44 44 H 1.09006 * 109.50061 * 294.65199 * 18 17 6 45 45 H 0.96994 * 120.00119 * 264.94200 * 21 19 18 46 46 H 0.96997 * 120.00033 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1281 -1.3087 6 7 2.2414 3.4657 -1.3492 7 6 1.4814 4.5581 -1.5635 8 8 0.2933 4.4367 -1.7924 9 6 2.0908 5.9004 -1.5205 10 6 3.2976 6.2767 -2.0696 11 8 3.4888 7.5732 -1.8156 12 6 2.4485 8.0605 -1.1086 13 6 2.3050 9.4445 -0.6414 14 7 3.2655 10.3502 -0.9125 15 8 1.3191 9.7739 -0.0090 16 6 1.5540 7.0565 -0.9010 17 6 3.6921 3.5900 -1.1521 18 6 4.0740 2.8881 0.1548 19 6 3.5656 1.4450 0.1217 20 1 3.8574 0.9359 1.0403 21 7 4.1480 0.7486 -1.0282 22 6 5.3861 0.1728 -0.9246 23 1 5.9334 0.2325 0.0045 24 6 5.9381 -0.4866 -2.0143 25 7 7.1283 -1.0396 -1.9150 26 14 4.9917 -0.5892 -3.6216 27 1 5.3321 0.5797 -4.4719 28 1 5.3568 -1.8411 -4.3319 29 1 3.5339 -0.5877 -3.3386 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.9906 1.5399 -2.1546 36 1 0.5496 2.2175 -1.3537 37 1 3.9723 5.6330 -2.6144 38 1 4.0517 10.0874 -1.4162 39 1 3.1709 11.2648 -0.6034 40 1 0.6174 7.1268 -0.3677 41 1 4.2155 3.1211 -1.9853 42 1 3.9640 4.6439 -1.0939 43 1 5.1584 2.8893 0.2650 44 1 3.6223 3.4142 0.9959 45 1 3.6566 0.6954 -1.8628 46 1 7.5143 -1.5001 -2.6765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037885740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:39 Heat of formation + Delta-G solvation = -41.764139 kcal Electronic energy + Delta-G solvation = -29785.717000 eV Core-core repulsion = 25677.452237 eV Total energy + Delta-G solvation = -4108.264763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.16800 -40.16742 -39.52196 -37.97062 -34.77572 -34.26195 -33.93642 -33.30948 -31.83779 -30.60566 -29.90795 -28.72601 -25.84139 -24.41710 -23.79835 -23.38070 -22.78184 -21.19185 -20.86015 -19.91465 -18.91798 -18.18982 -17.88158 -17.30172 -17.02879 -16.77769 -16.20764 -15.82534 -15.21676 -14.84010 -14.70122 -14.62784 -14.37001 -14.11002 -13.76337 -13.55385 -13.46967 -13.36755 -13.21264 -12.79747 -12.52736 -12.47857 -11.97523 -11.70980 -11.34022 -11.18447 -11.01796 -10.93292 -10.87156 -10.46470 -10.39148 -10.35670 -10.26984 -10.23370 -9.92707 -9.89858 -9.62138 -9.08296 -8.96895 -8.47566 -7.35675 -5.85429 -3.21119 0.61736 1.46960 2.20964 2.67497 2.79637 3.07708 3.21441 3.27640 3.30597 3.38421 4.22831 4.32961 4.49710 4.56538 4.86370 5.01603 5.06635 5.14265 5.20007 5.25749 5.32258 5.42185 5.46579 5.51217 5.57708 5.60473 5.70439 5.78675 5.82011 5.95524 5.98868 6.13960 6.15174 6.21191 6.26536 6.34673 6.38660 6.44598 6.48902 6.60602 6.70931 6.81070 6.83903 7.44361 7.68363 7.90853 8.14106 8.33580 9.11600 9.84089 10.03857 11.32904 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.003362 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.301060 B = 8326.650444 C = 9410.807613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.119 3.881 6 N -0.596 5.596 7 C 0.584 3.416 8 O -0.539 6.539 9 C -0.227 4.227 10 C 0.044 3.956 11 O -0.153 6.153 12 C -0.094 4.094 13 C 0.613 3.387 14 N -0.844 5.844 15 O -0.521 6.521 16 C -0.064 4.064 17 C 0.099 3.901 18 C -0.149 4.149 19 C 0.184 3.816 20 H 0.061 0.939 21 N -0.744 5.744 22 C -0.241 4.241 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.877 3.123 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.227 0.773 38 H 0.408 0.592 39 H 0.410 0.590 40 H 0.168 0.832 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 17.127 1.454 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.328 5.328 7 C 0.372 3.628 8 O -0.418 6.418 9 C -0.231 4.231 10 C -0.028 4.028 11 O -0.047 6.047 12 C -0.146 4.146 13 C 0.398 3.602 14 N -0.407 5.407 15 O -0.398 6.398 16 C -0.085 4.085 17 C -0.023 4.023 18 C -0.190 4.190 19 C 0.075 3.925 20 H 0.079 0.921 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.708 3.292 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.243 0.757 38 H 0.237 0.763 39 H 0.241 0.759 40 H 0.186 0.814 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.950 17.189 1.723 19.016 hybrid contribution -0.046 -0.136 -1.400 1.407 sum -7.995 17.052 0.323 18.836 Atomic orbital electron populations 1.21863 0.96577 1.01236 1.01513 1.21434 0.94530 0.95580 1.03378 1.21816 0.97465 0.96299 0.97125 0.90878 1.21731 0.99198 0.81160 0.98226 1.48040 1.08768 1.06353 1.69654 1.17257 0.85796 0.82747 0.77015 1.90785 1.15166 1.86373 1.49441 1.20684 0.97461 0.96228 1.08767 1.25333 0.96691 0.81667 0.99109 1.83911 1.40656 1.23878 1.56291 1.21747 0.90541 0.95695 1.06580 1.16468 0.82927 0.82080 0.78713 1.43671 1.23852 1.13714 1.59464 1.90949 1.30138 1.78529 1.40203 1.21826 0.99718 0.89153 0.97760 1.22084 0.79003 1.00755 1.00430 1.22487 1.02384 0.98747 0.95361 1.20191 0.89392 0.90681 0.92276 0.92093 1.42846 1.19589 1.65863 1.10438 1.19051 0.91779 1.27045 0.99236 0.89151 1.24639 0.96430 1.00245 0.97542 1.69685 1.16280 1.41224 1.30815 0.86679 0.79657 0.77517 0.85371 1.21181 1.21721 1.20361 0.92834 0.93083 0.93004 0.91461 0.91062 0.91332 0.89061 0.75736 0.76299 0.75863 0.81399 0.89827 0.90504 0.90074 0.92780 0.80608 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C -0.11 -1.57 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.79 5.02 -3.71 -0.02 1.77 16 6 N -0.60 -8.57 2.97 -174.02 -0.52 -9.09 16 7 C 0.58 8.79 7.61 -12.49 -0.10 8.69 16 8 O -0.54 -9.82 16.53 5.27 0.09 -9.73 16 9 C -0.23 -2.81 5.40 -104.95 -0.57 -3.37 16 10 C 0.04 0.42 9.72 30.58 0.30 0.72 16 11 O -0.15 -1.39 10.33 6.19 0.06 -1.33 16 12 C -0.09 -1.00 7.09 -36.92 -0.26 -1.26 16 13 C 0.61 6.25 8.06 -12.81 -0.10 6.15 16 14 N -0.84 -4.89 8.87 30.28 0.27 -4.62 16 15 O -0.52 -7.15 17.68 5.21 0.09 -7.06 16 16 C -0.06 -0.77 10.59 -39.03 -0.41 -1.19 16 17 C 0.10 1.33 5.45 -3.71 -0.02 1.31 16 18 C -0.15 -2.18 5.78 -26.62 -0.15 -2.34 16 19 C 0.18 3.09 2.53 -67.89 -0.17 2.92 16 20 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 21 N -0.74 -15.27 3.52 -53.38 -0.19 -15.46 16 22 C -0.24 -6.12 10.41 -15.06 -0.16 -6.28 16 23 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -27.72 13.97 55.49 0.78 -26.95 16 26 Si 0.88 20.74 27.74 -169.99 -4.71 16.02 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 30 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.17 7.69 -51.93 -0.40 0.78 16 35 H 0.07 1.11 6.64 -51.93 -0.34 0.76 16 36 H 0.09 1.39 5.74 -51.93 -0.30 1.10 16 37 H 0.23 1.53 7.03 -52.49 -0.37 1.16 16 38 H 0.41 1.50 8.57 -40.82 -0.35 1.15 16 39 H 0.41 1.66 8.93 -40.82 -0.36 1.29 16 40 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 41 H 0.08 1.24 7.74 -51.93 -0.40 0.84 16 42 H 0.08 0.83 4.15 -51.93 -0.22 0.61 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.36 7.44 3.80 -40.82 -0.16 7.29 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -33.37 370.85 -6.49 -39.86 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.22 Total: 10.60 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.73 Total: 2.17 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.34 Total: -56.12 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.24 Total: -18.12 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.37 -6.49 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.905 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds