Wall clock time and date at job start Tue Mar 31 2020 18:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 H 1.09008 * 109.49521 * 304.99882 * 3 2 1 5 5 C 1.53192 * 109.49961 * 65.06162 * 3 2 1 6 6 N 1.46924 * 108.77640 * 174.59149 * 5 3 2 7 7 C 1.34776 * 120.63091 * 126.37048 * 6 5 3 8 8 O 1.21615 * 120.00191 * 352.66139 * 7 6 5 9 9 C 1.47297 * 119.99877 * 172.65533 * 7 6 5 10 10 C 1.36563 * 125.80232 * 172.40260 * 9 7 6 11 11 C 1.40062 * 106.92273 * 179.97438 * 10 9 7 12 12 C 1.36563 * 106.92953 * 0.02562 * 11 10 9 13 13 C 1.47292 * 125.80904 * 179.97438 * 12 11 10 14 14 N 1.34778 * 119.99912 * 179.97438 * 13 12 11 15 15 O 1.21616 * 119.99939 * 0.02562 * 13 12 11 16 16 O 1.34548 * 125.80534 * 352.10256 * 9 7 6 17 17 C 1.46934 * 118.73665 * 306.38710 * 6 5 3 18 18 C 1.53194 * 108.77150 * 53.61468 * 17 6 5 19 19 C 1.53036 * 109.33713 * 305.37605 * 18 17 6 20 20 H 1.08998 * 109.43830 * 301.31469 * 19 18 17 21 21 N 1.46506 * 109.48592 * 181.35808 * 19 18 17 22 22 C 1.36936 * 119.99947 * 84.91150 * 21 19 18 23 23 H 1.07995 * 120.00287 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99916 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99632 * 359.97438 * 24 22 21 26 26 Si 1.86788 * 120.00059 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47484 * 59.99521 * 26 24 22 28 28 H 1.48497 * 109.47385 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47337 * 299.99712 * 26 24 22 30 30 H 1.08997 * 109.47252 * 300.00373 * 1 2 3 31 31 H 1.08998 * 109.46525 * 60.00126 * 1 2 3 32 32 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47338 * 239.99563 * 2 1 3 34 34 H 1.08997 * 109.47255 * 120.00019 * 2 1 3 35 35 H 1.09005 * 109.58513 * 294.37986 * 5 3 2 36 36 H 1.08999 * 109.58449 * 54.65465 * 5 3 2 37 37 H 1.07999 * 126.53942 * 359.97438 * 10 9 7 38 38 H 1.08009 * 126.53728 * 179.97438 * 11 10 9 39 39 H 0.96997 * 120.00700 * 0.02562 * 14 13 12 40 40 H 0.97000 * 119.99812 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.58362 * 173.39660 * 17 6 5 42 42 H 1.09001 * 109.58878 * 293.82498 * 17 6 5 43 43 H 1.08995 * 109.50120 * 65.31441 * 18 17 6 44 44 H 1.09005 * 109.49004 * 185.38122 * 18 17 6 45 45 H 0.97002 * 119.99769 * 264.92018 * 21 19 18 46 46 H 0.96994 * 119.99174 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6057 1.9819 -0.8418 5 6 1.6365 2.1275 1.3094 6 7 2.2430 3.4652 1.3498 7 6 1.4832 4.5574 1.5644 8 8 0.2714 4.4590 1.5940 9 6 2.1205 5.8704 1.7635 10 6 1.4718 7.0694 1.8434 11 6 2.4521 8.0514 2.0345 12 6 3.6574 7.4099 2.0625 13 6 4.9710 8.0514 2.2425 14 7 6.0912 7.3020 2.2519 15 8 5.0448 9.2571 2.3836 16 8 3.4403 6.0916 1.9030 17 6 3.6935 3.5894 1.1512 18 6 4.0740 2.8880 -0.1565 19 6 3.5654 1.4450 -0.1241 20 1 4.0001 0.9263 0.7304 21 7 3.9557 0.7614 -1.3597 22 6 5.1939 0.1856 -1.4619 23 1 5.8827 0.2351 -0.6315 24 6 5.5639 -0.4616 -2.6328 25 7 4.7243 -0.5223 -3.6447 26 14 7.2527 -1.2476 -2.7720 27 1 7.4020 -2.2890 -1.7238 28 1 7.4001 -1.8701 -4.1121 29 1 8.2986 -0.2091 -2.5903 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5511 2.2169 1.3556 36 1 1.9908 1.5376 2.1547 37 1 0.4061 7.2299 1.7728 38 1 2.2865 9.1136 2.1390 39 1 6.0325 6.3403 2.1398 40 1 6.9563 7.7245 2.3701 41 1 3.9654 4.6433 1.0930 42 1 4.2178 3.1201 1.9836 43 1 3.6210 3.4141 -0.9967 44 1 5.1583 2.8897 -0.2680 45 1 3.3370 0.7167 -2.1055 46 1 4.9828 -0.9749 -4.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037895729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:18 Heat of formation + Delta-G solvation = -66.056145 kcal Electronic energy + Delta-G solvation = -29591.695703 eV Core-core repulsion = 25482.377559 eV Total energy + Delta-G solvation = -4109.318143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.04129 -41.26606 -40.33297 -39.20309 -36.34219 -35.35526 -35.02306 -34.17461 -33.47490 -31.65029 -31.12054 -29.91937 -27.14389 -25.69440 -25.08113 -24.27027 -23.12668 -22.28771 -21.82528 -21.41964 -20.80937 -19.38803 -19.05721 -18.52145 -17.96466 -17.83967 -17.38476 -16.80556 -16.29827 -15.95246 -15.63534 -15.59121 -15.41149 -15.30787 -14.86366 -14.67193 -14.61674 -14.34477 -14.25984 -14.19284 -13.99080 -13.56701 -13.10005 -12.96833 -12.78969 -12.61635 -12.52858 -12.20386 -12.06290 -11.86905 -11.80891 -11.59667 -11.51677 -11.36445 -11.23993 -11.09348 -10.90507 -10.79540 -10.07864 -9.71038 -8.94379 -7.88913 -5.16354 -0.54784 0.75742 1.10472 1.50518 1.52103 1.58024 1.77709 1.94408 1.97533 2.38287 2.59920 3.21748 3.44607 3.66272 3.75343 3.78572 3.85502 3.98111 4.05130 4.17803 4.32685 4.35568 4.35774 4.42437 4.52001 4.64491 4.70479 4.77912 4.78774 4.82658 4.93681 5.01450 5.04159 5.08383 5.17169 5.27927 5.35802 5.41073 5.46509 5.53279 5.59549 5.64739 5.71139 6.14312 6.21530 6.32189 6.78750 7.02518 7.39081 8.15289 8.38098 9.34483 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.003430 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.437815 B = 8160.886255 C =10310.691448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.095 4.095 4 H 0.051 0.949 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.597 3.403 8 O -0.547 6.547 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.127 4.127 12 C -0.063 4.063 13 C 0.611 3.389 14 N -0.819 5.819 15 O -0.554 6.554 16 O -0.140 6.140 17 C 0.105 3.895 18 C -0.141 4.141 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.731 5.731 22 C -0.230 4.230 23 H 0.080 0.920 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.966 3.034 27 H -0.279 1.279 28 H -0.303 1.303 29 H -0.278 1.278 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.420 0.580 40 H 0.422 0.578 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.370 0.630 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 12.928 15.494 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.115 4.115 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.385 3.615 8 O -0.428 6.428 9 C -0.102 4.102 10 C -0.149 4.149 11 C -0.147 4.147 12 C -0.117 4.117 13 C 0.394 3.606 14 N -0.383 5.383 15 O -0.434 6.434 16 O -0.036 6.036 17 C -0.017 4.017 18 C -0.182 4.182 19 C 0.070 3.930 20 H 0.071 0.929 21 N -0.369 5.369 22 C -0.362 4.362 23 H 0.098 0.902 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.796 3.204 27 H -0.205 1.205 28 H -0.230 1.230 29 H -0.204 1.204 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.198 0.802 38 H 0.201 0.799 39 H 0.251 0.749 40 H 0.256 0.744 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.119 13.283 15.633 20.750 hybrid contribution 0.926 -0.828 -1.151 1.694 sum -2.193 12.454 14.481 19.226 Atomic orbital electron populations 1.21789 0.94898 1.01921 1.01795 1.21350 0.96032 0.94984 1.02096 1.21649 0.95932 0.96624 0.97255 0.93020 1.21821 0.99714 0.80696 0.97479 1.48134 1.09377 1.06475 1.68419 1.16970 0.85711 0.81681 0.77157 1.90838 1.13438 1.84576 1.53912 1.22274 0.81085 0.96194 1.10600 1.22200 1.02454 0.89626 1.00587 1.22213 0.89669 1.02305 1.00532 1.22592 0.96795 0.81736 1.10564 1.16618 0.82340 0.85459 0.76156 1.43596 1.08533 1.12747 1.73428 1.90914 1.86121 1.14304 1.52081 1.84231 1.25080 1.24878 1.69455 1.22301 0.78305 1.02857 0.98208 1.22492 1.01676 0.97758 0.96296 1.20436 0.92325 0.91107 0.89165 0.92876 1.42584 1.15487 1.64930 1.13940 1.19571 0.92587 1.25725 0.98315 0.90210 1.25461 1.01424 1.03237 0.96594 1.69816 1.37122 1.50117 1.05179 0.85319 0.80546 0.78476 0.76063 1.20508 1.23003 1.20373 0.91452 0.93727 0.92182 0.93533 0.91378 0.88787 0.88870 0.80206 0.79914 0.74895 0.74425 0.87470 0.88538 0.94061 0.90860 0.79842 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.67 71.98 0.70 -3.00 16 2 C -0.11 -3.21 5.31 30.59 0.16 -3.04 16 3 C -0.09 -2.85 1.92 -10.72 -0.02 -2.87 16 4 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 5 C 0.12 3.08 5.34 86.36 0.46 3.54 16 6 N -0.59 -14.53 2.97 -822.91 -2.45 -16.98 16 7 C 0.60 15.64 7.67 86.63 0.66 16.31 16 8 O -0.55 -17.10 16.30 -4.08 -0.07 -17.16 16 9 C -0.05 -1.06 6.77 24.26 0.16 -0.89 16 10 C -0.13 -2.47 10.60 22.32 0.24 -2.23 16 11 C -0.13 -2.26 10.60 22.32 0.24 -2.02 16 12 C -0.06 -1.18 7.14 24.26 0.17 -1.00 16 13 C 0.61 11.10 8.08 86.62 0.70 11.80 16 14 N -0.82 -8.67 8.87 -175.98 -1.56 -10.23 16 15 O -0.55 -13.75 17.70 -4.08 -0.07 -13.82 16 16 O -0.14 -2.61 7.01 -7.33 -0.05 -2.67 16 17 C 0.11 2.29 6.11 86.36 0.53 2.82 16 18 C -0.14 -4.23 5.66 30.67 0.17 -4.05 16 19 C 0.18 6.15 2.19 45.02 0.10 6.25 16 20 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 21 N -0.73 -33.80 4.33 -322.81 -1.40 -35.20 16 22 C -0.23 -11.79 9.93 84.03 0.83 -10.96 16 23 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 24 C -0.08 -4.11 5.50 84.86 0.47 -3.64 16 25 N -0.97 -57.79 13.06 21.65 0.28 -57.50 16 26 Si 0.97 44.21 29.55 68.60 2.03 46.23 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 30 H 0.07 1.46 6.70 -2.39 -0.02 1.45 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.77 7.22 -2.38 -0.02 1.75 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.40 5.72 -2.38 -0.01 2.38 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.42 2.97 8.59 -92.71 -0.80 2.17 16 40 H 0.42 3.05 8.93 -92.71 -0.83 2.22 16 41 H 0.11 2.07 4.26 -18.14 -0.08 1.99 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 45 H 0.37 19.13 7.51 -92.71 -0.70 18.44 16 46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -69.20 377.98 0.95 -68.25 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -1.34 Total: 32.08 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.57 Total: 6.99 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -5.12 Total: -119.91 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.19 Total: -33.65 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.20 0.95 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037895729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds