Wall clock time and date at job start Tue Mar 31 2020 18:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46629 * 2 1 4 4 H 1.08999 * 109.50082 * 304.93059 * 3 2 1 5 5 C 1.53196 * 109.50252 * 64.99624 * 3 2 1 6 6 N 1.46924 * 108.77721 * 174.58625 * 5 3 2 7 7 C 1.34773 * 120.62854 * 126.36649 * 6 5 3 8 8 O 1.21606 * 120.00434 * 4.00391 * 7 6 5 9 9 C 1.47293 * 119.99481 * 183.99990 * 7 6 5 10 10 C 1.36580 * 125.80264 * 173.10669 * 9 7 6 11 11 C 1.40059 * 106.92155 * 180.02562 * 10 9 7 12 12 C 1.36559 * 106.93238 * 359.97438 * 11 10 9 13 13 C 1.47297 * 125.81018 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00233 * 179.97438 * 13 12 11 15 15 O 1.21615 * 119.99286 * 359.96972 * 13 12 11 16 16 O 1.34550 * 108.38954 * 359.97438 * 12 11 10 17 17 C 1.46927 * 118.73556 * 306.64266 * 6 5 3 18 18 C 1.52764 * 109.01210 * 53.31385 * 17 6 5 19 19 C 1.53042 * 109.37741 * 305.58549 * 18 17 6 20 20 H 1.09007 * 109.45888 * 181.25908 * 19 18 17 21 21 N 1.46495 * 109.46150 * 301.21852 * 19 18 17 22 22 C 1.36940 * 120.00354 * 275.06883 * 21 19 18 23 23 H 1.08001 * 119.99369 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00630 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00375 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47233 * 89.99978 * 26 24 22 28 28 H 1.48503 * 109.47377 * 209.99913 * 26 24 22 29 29 H 1.48505 * 109.47231 * 330.00099 * 26 24 22 30 30 H 1.09004 * 109.46597 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47854 * 300.00413 * 1 2 3 32 32 H 1.09007 * 109.47067 * 60.00702 * 1 2 3 33 33 H 1.08992 * 109.47404 * 239.99620 * 2 1 3 34 34 H 1.09004 * 109.46573 * 119.99186 * 2 1 3 35 35 H 1.08999 * 109.58288 * 54.79966 * 5 3 2 36 36 H 1.08995 * 109.70059 * 294.44384 * 5 3 2 37 37 H 1.07997 * 126.53241 * 0.02562 * 10 9 7 38 38 H 1.08001 * 126.53206 * 180.02562 * 11 10 9 39 39 H 0.96995 * 120.00080 * 359.97438 * 14 13 12 40 40 H 0.97001 * 119.99604 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.58558 * 173.14261 * 17 6 5 42 42 H 1.09000 * 109.58810 * 293.56770 * 17 6 5 43 43 H 1.08998 * 109.56467 * 185.55197 * 18 17 6 44 44 H 1.08997 * 109.36374 * 65.49166 * 18 17 6 45 45 H 0.97005 * 120.00209 * 95.07153 * 21 19 18 46 46 H 0.96997 * 120.00385 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6348 2.1282 1.3087 6 7 2.2412 3.4658 1.3492 7 6 1.4811 4.5581 1.5626 8 8 0.2939 4.4366 1.7961 9 6 2.0885 5.8990 1.5129 10 6 1.4137 7.0847 1.5783 11 6 2.3710 8.1037 1.4953 12 6 3.5892 7.4968 1.3834 13 6 4.8871 8.1838 1.2691 14 7 6.0228 7.4657 1.1648 15 8 4.9338 9.3990 1.2688 16 8 3.4024 6.1644 1.3964 17 6 3.6911 3.5906 1.1466 18 6 4.0740 2.8882 -0.1548 19 6 3.5655 1.4451 -0.1216 20 1 3.8574 0.9360 -1.0402 21 7 4.1478 0.7488 1.0282 22 6 5.3860 0.1729 0.9248 23 1 5.9333 0.2326 -0.0043 24 6 5.9381 -0.4864 2.0144 25 7 5.2713 -0.5586 3.1469 26 14 7.6273 -1.2712 1.8736 27 1 8.6661 -0.2830 2.2605 28 1 7.7032 -2.4482 2.7759 29 1 7.8557 -1.7064 0.4722 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.9906 1.5400 2.1546 36 1 0.5496 2.2173 1.3562 37 1 0.3457 7.2121 1.6754 38 1 2.1819 9.1668 1.5166 39 1 5.9856 6.4965 1.1653 40 1 6.8775 7.9182 1.0892 41 1 3.9620 4.6446 1.0846 42 1 4.2179 3.1241 1.9791 43 1 5.1584 2.8894 -0.2649 44 1 3.6218 3.4139 -0.9958 45 1 3.6564 0.6955 1.8629 46 1 5.6571 -1.0190 3.9085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037895733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:22 Heat of formation + Delta-G solvation = -38.607791 kcal Electronic energy + Delta-G solvation = -30109.652721 eV Core-core repulsion = 26001.524828 eV Total energy + Delta-G solvation = -4108.127893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.09202 -40.07870 -39.40869 -37.96435 -34.75340 -34.17286 -33.83702 -33.22696 -31.81786 -30.59006 -29.53967 -28.53870 -25.90998 -24.14762 -23.90950 -23.50767 -22.19402 -21.12034 -20.77414 -20.36768 -18.86097 -18.31440 -17.43317 -17.31229 -17.05046 -16.84454 -16.12383 -15.19622 -15.06973 -14.75904 -14.58713 -14.46520 -14.17217 -13.90308 -13.66102 -13.50832 -13.37041 -13.34833 -13.10953 -13.01788 -12.59060 -12.28105 -11.72593 -11.51974 -11.17492 -10.99697 -10.88676 -10.85971 -10.72979 -10.43743 -10.36153 -10.34317 -10.23952 -10.11827 -10.03278 -9.88363 -9.63464 -9.04703 -8.98867 -8.40175 -7.05743 -5.86211 -3.15152 0.44463 1.72025 2.10828 2.85106 2.94961 3.08196 3.25191 3.35646 3.42162 3.43775 4.26148 4.50687 4.56138 4.67019 4.99993 5.15727 5.19073 5.24810 5.27758 5.44647 5.50960 5.53224 5.60858 5.63541 5.70411 5.76428 5.83863 5.96886 5.99029 6.06879 6.14888 6.24154 6.26990 6.29314 6.33776 6.43849 6.49239 6.54184 6.62056 6.67377 6.83627 6.89933 6.96220 7.42934 7.61668 7.76950 8.01731 8.31969 9.43855 9.99572 10.34600 11.36003 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004073 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.190878 B = 6872.711998 C = 8999.230280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.585 5.585 7 C 0.592 3.408 8 O -0.526 6.526 9 C -0.024 4.024 10 C -0.141 4.141 11 C -0.125 4.125 12 C -0.069 4.069 13 C 0.610 3.390 14 N -0.839 5.839 15 O -0.523 6.523 16 O -0.140 6.140 17 C 0.097 3.903 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.411 0.589 40 H 0.411 0.589 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 12.097 -5.622 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.315 5.315 7 C 0.378 3.622 8 O -0.405 6.405 9 C -0.077 4.077 10 C -0.162 4.162 11 C -0.146 4.146 12 C -0.122 4.122 13 C 0.395 3.605 14 N -0.403 5.403 15 O -0.400 6.400 16 O -0.037 6.037 17 C -0.024 4.024 18 C -0.190 4.190 19 C 0.067 3.933 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.186 0.814 38 H 0.184 0.816 39 H 0.240 0.760 40 H 0.243 0.757 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.304 12.451 -5.541 14.624 hybrid contribution 1.248 -0.677 0.238 1.439 sum -4.056 11.774 -5.303 13.535 Atomic orbital electron populations 1.21864 0.96747 1.01160 1.01373 1.21415 0.94323 0.95508 1.03520 1.21770 0.97516 0.96313 0.96767 0.91415 1.21833 0.98871 0.80760 0.98877 1.48088 1.09151 1.06384 1.67894 1.16844 0.85677 0.81317 0.78345 1.90839 1.14242 1.84785 1.50591 1.22648 0.80633 0.96382 1.08077 1.21941 1.01669 0.89785 1.02791 1.21940 0.90119 1.01384 1.01148 1.22481 0.96357 0.81828 1.11567 1.16640 0.81858 0.85973 0.76072 1.43720 1.08806 1.11849 1.75888 1.90910 1.85956 1.12213 1.50961 1.84372 1.26236 1.22940 1.70127 1.22249 0.78499 1.01196 1.00428 1.22466 1.01988 0.99275 0.95318 1.20237 0.89667 0.90612 0.92776 0.92917 1.42473 1.19046 1.64034 1.10512 1.19200 0.93518 1.27223 0.97105 0.91246 1.24693 0.98499 1.01365 0.96018 1.69640 1.38013 1.48022 1.02253 0.86253 0.84375 0.78798 0.77087 1.21843 1.21871 1.20840 0.93073 0.92753 0.93339 0.91889 0.90388 0.90114 0.89227 0.81422 0.81576 0.75951 0.75708 0.89041 0.89164 0.90474 0.93281 0.78113 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.10 -1.56 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.85 5.02 -3.71 -0.02 1.83 16 6 N -0.59 -8.99 2.98 -174.35 -0.52 -9.51 16 7 C 0.59 9.21 7.68 -12.58 -0.10 9.11 16 8 O -0.53 -9.25 16.30 5.27 0.09 -9.17 16 9 C -0.02 -0.32 6.87 -36.50 -0.25 -0.57 16 10 C -0.14 -1.65 10.60 -39.50 -0.42 -2.07 16 11 C -0.13 -1.37 10.59 -39.51 -0.42 -1.79 16 12 C -0.07 -0.81 7.14 -36.51 -0.26 -1.07 16 13 C 0.61 6.90 8.08 -12.58 -0.10 6.80 16 14 N -0.84 -6.70 8.87 30.40 0.27 -6.43 16 15 O -0.52 -7.37 17.70 5.26 0.09 -7.28 16 16 O -0.14 -1.71 6.81 4.35 0.03 -1.68 16 17 C 0.10 1.45 6.03 -3.93 -0.02 1.43 16 18 C -0.15 -2.26 5.76 -26.83 -0.15 -2.41 16 19 C 0.18 3.06 2.53 -67.89 -0.17 2.88 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.44 3.72 -53.38 -0.20 -15.64 16 22 C -0.24 -5.92 9.93 -15.06 -0.15 -6.06 16 23 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.05 13.06 55.49 0.72 -25.32 16 26 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 35 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 36 H 0.09 1.39 5.75 -51.93 -0.30 1.09 16 37 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.41 2.84 8.59 -40.82 -0.35 2.49 16 40 H 0.41 2.52 8.93 -40.82 -0.36 2.15 16 41 H 0.09 1.20 3.76 -55.38 -0.21 0.99 16 42 H 0.09 1.59 7.74 -51.93 -0.40 1.18 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.38 8.92 5.94 -40.82 -0.24 8.68 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -30.19 373.96 -7.34 -37.53 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.31 Total: 13.29 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.13 Total: 2.62 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.21 Total: -18.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.19 -7.34 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037895733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.080 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds