Wall clock time and date at job start Tue Mar 31 2020 18:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46629 * 2 1 4 4 H 1.08999 * 109.50082 * 304.93059 * 3 2 1 5 5 C 1.53196 * 109.50252 * 64.99624 * 3 2 1 6 6 N 1.46924 * 108.77721 * 174.58625 * 5 3 2 7 7 C 1.34773 * 120.62854 * 126.36649 * 6 5 3 8 8 O 1.21606 * 120.00434 * 4.00391 * 7 6 5 9 9 C 1.47293 * 119.99481 * 183.99990 * 7 6 5 10 10 C 1.36580 * 125.80264 * 173.10669 * 9 7 6 11 11 C 1.40059 * 106.92155 * 180.02562 * 10 9 7 12 12 C 1.36559 * 106.93238 * 359.97438 * 11 10 9 13 13 C 1.47297 * 125.81018 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00233 * 179.97438 * 13 12 11 15 15 O 1.21615 * 119.99286 * 359.96972 * 13 12 11 16 16 O 1.34550 * 108.38954 * 359.97438 * 12 11 10 17 17 C 1.46927 * 118.73556 * 306.64266 * 6 5 3 18 18 C 1.52764 * 109.01210 * 53.31385 * 17 6 5 19 19 C 1.53042 * 109.37741 * 305.58549 * 18 17 6 20 20 H 1.09007 * 109.45888 * 181.25908 * 19 18 17 21 21 N 1.46495 * 109.46150 * 301.21852 * 19 18 17 22 22 C 1.36940 * 120.00354 * 275.06883 * 21 19 18 23 23 H 1.08001 * 119.99369 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00630 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99770 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00375 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47233 * 89.99978 * 26 24 22 28 28 H 1.48503 * 109.47377 * 209.99913 * 26 24 22 29 29 H 1.48505 * 109.47231 * 330.00099 * 26 24 22 30 30 H 1.09004 * 109.46597 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47854 * 300.00413 * 1 2 3 32 32 H 1.09007 * 109.47067 * 60.00702 * 1 2 3 33 33 H 1.08992 * 109.47404 * 239.99620 * 2 1 3 34 34 H 1.09004 * 109.46573 * 119.99186 * 2 1 3 35 35 H 1.08999 * 109.58288 * 54.79966 * 5 3 2 36 36 H 1.08995 * 109.70059 * 294.44384 * 5 3 2 37 37 H 1.07997 * 126.53241 * 0.02562 * 10 9 7 38 38 H 1.08001 * 126.53206 * 180.02562 * 11 10 9 39 39 H 0.96995 * 120.00080 * 359.97438 * 14 13 12 40 40 H 0.97001 * 119.99604 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.58558 * 173.14261 * 17 6 5 42 42 H 1.09000 * 109.58810 * 293.56770 * 17 6 5 43 43 H 1.08998 * 109.56467 * 185.55197 * 18 17 6 44 44 H 1.08997 * 109.36374 * 65.49166 * 18 17 6 45 45 H 0.97005 * 120.00209 * 95.07153 * 21 19 18 46 46 H 0.96997 * 120.00385 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6348 2.1282 1.3087 6 7 2.2412 3.4658 1.3492 7 6 1.4811 4.5581 1.5626 8 8 0.2939 4.4366 1.7961 9 6 2.0885 5.8990 1.5129 10 6 1.4137 7.0847 1.5783 11 6 2.3710 8.1037 1.4953 12 6 3.5892 7.4968 1.3834 13 6 4.8871 8.1838 1.2691 14 7 6.0228 7.4657 1.1648 15 8 4.9338 9.3990 1.2688 16 8 3.4024 6.1644 1.3964 17 6 3.6911 3.5906 1.1466 18 6 4.0740 2.8882 -0.1548 19 6 3.5655 1.4451 -0.1216 20 1 3.8574 0.9360 -1.0402 21 7 4.1478 0.7488 1.0282 22 6 5.3860 0.1729 0.9248 23 1 5.9333 0.2326 -0.0043 24 6 5.9381 -0.4864 2.0144 25 7 5.2713 -0.5586 3.1469 26 14 7.6273 -1.2712 1.8736 27 1 8.6661 -0.2830 2.2605 28 1 7.7032 -2.4482 2.7759 29 1 7.8557 -1.7064 0.4722 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.9906 1.5400 2.1546 36 1 0.5496 2.2173 1.3562 37 1 0.3457 7.2121 1.6754 38 1 2.1819 9.1668 1.5166 39 1 5.9856 6.4965 1.1653 40 1 6.8775 7.9182 1.0892 41 1 3.9620 4.6446 1.0846 42 1 4.2179 3.1241 1.9791 43 1 5.1584 2.8894 -0.2649 44 1 3.6218 3.4139 -0.9958 45 1 3.6564 0.6955 1.8629 46 1 5.6571 -1.0190 3.9085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037895733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:21 Heat of formation + Delta-G solvation = -59.428436 kcal Electronic energy + Delta-G solvation = -30110.555572 eV Core-core repulsion = 26001.524828 eV Total energy + Delta-G solvation = -4109.030744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.04974 -41.31687 -40.33991 -39.28219 -36.08060 -35.36621 -35.02066 -34.17104 -33.43347 -31.60371 -31.05938 -29.84881 -27.14851 -25.63388 -25.12323 -24.91641 -23.15848 -22.27590 -21.82940 -21.42227 -20.10237 -19.39827 -19.14086 -18.45090 -17.96161 -17.83054 -17.35732 -16.64774 -16.24250 -16.14158 -15.73606 -15.61492 -15.49335 -15.26259 -14.90280 -14.68747 -14.55661 -14.35752 -14.31151 -14.19446 -13.94731 -13.59125 -13.02038 -12.87781 -12.81699 -12.64443 -12.37543 -12.11317 -11.97803 -11.86190 -11.82268 -11.60765 -11.44791 -11.31370 -11.25756 -11.11513 -10.91223 -10.78325 -10.05961 -9.65451 -8.89973 -7.86339 -5.12248 -0.54001 0.76913 1.09970 1.50861 1.52680 1.59534 1.83235 1.94125 1.97153 2.37958 2.61741 3.20661 3.47962 3.66019 3.76401 3.85772 3.86456 4.02006 4.07286 4.14727 4.34571 4.36230 4.42811 4.47092 4.49169 4.61672 4.69473 4.72242 4.84398 4.96562 5.01583 5.04751 5.09395 5.17979 5.23897 5.25307 5.28319 5.41946 5.42662 5.52265 5.61665 5.65518 5.71341 6.16054 6.23659 6.35238 6.80251 7.00912 7.43410 8.19203 8.42621 9.36826 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.004073 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.190878 B = 6872.711998 C = 8999.230280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.088 0.912 5 C 0.124 3.876 6 N -0.587 5.587 7 C 0.593 3.407 8 O -0.550 6.550 9 C -0.049 4.049 10 C -0.125 4.125 11 C -0.123 4.123 12 C -0.068 4.068 13 C 0.611 3.389 14 N -0.821 5.821 15 O -0.553 6.553 16 O -0.142 6.142 17 C 0.105 3.895 18 C -0.141 4.141 19 C 0.171 3.829 20 H 0.050 0.950 21 N -0.723 5.723 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.070 4.070 25 N -0.968 5.968 26 Si 0.960 3.040 27 H -0.290 1.290 28 H -0.305 1.305 29 H -0.272 1.272 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.183 0.817 38 H 0.186 0.814 39 H 0.418 0.582 40 H 0.422 0.578 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.373 0.627 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.006 13.651 -7.355 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.106 0.894 5 C 0.002 3.998 6 N -0.317 5.317 7 C 0.381 3.619 8 O -0.431 6.431 9 C -0.102 4.102 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.121 4.121 13 C 0.395 3.605 14 N -0.384 5.384 15 O -0.433 6.433 16 O -0.039 6.039 17 C -0.016 4.016 18 C -0.181 4.181 19 C 0.062 3.938 20 H 0.068 0.932 21 N -0.364 5.364 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.620 5.620 26 Si 0.791 3.209 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.197 1.197 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.200 0.800 38 H 0.203 0.797 39 H 0.249 0.751 40 H 0.256 0.744 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.207 0.793 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.326 14.004 -7.333 16.681 hybrid contribution 1.244 -1.086 0.721 1.802 sum -4.082 12.918 -6.612 15.075 Atomic orbital electron populations 1.21801 0.94712 1.01968 1.01988 1.21336 0.96092 0.94997 1.01885 1.21685 0.95942 0.96598 0.97026 0.89400 1.21689 0.98961 0.80924 0.98253 1.48099 1.09260 1.06316 1.68031 1.17027 0.85411 0.81922 0.77490 1.90818 1.15250 1.85365 1.51663 1.22311 0.81278 0.95771 1.10828 1.22191 1.02503 0.89170 1.00628 1.22205 0.89545 1.02227 1.00396 1.22685 0.96982 0.81462 1.10962 1.16623 0.82303 0.85600 0.76005 1.43624 1.08546 1.12203 1.74048 1.90903 1.86303 1.13374 1.52735 1.84246 1.25777 1.23405 1.70478 1.22148 0.78031 1.02294 0.99111 1.22336 1.01892 0.97672 0.96237 1.20467 0.91020 0.91397 0.90889 0.93167 1.42579 1.18208 1.64290 1.11371 1.19552 0.94183 1.25128 0.96722 0.90579 1.25324 1.01542 1.03223 0.96142 1.69793 1.39435 1.49896 1.02840 0.85334 0.81124 0.77416 0.77021 1.21766 1.23282 1.19733 0.92265 0.93025 0.91734 0.91837 0.93619 0.92680 0.88855 0.79963 0.79675 0.75089 0.74432 0.86846 0.92254 0.90738 0.90804 0.79330 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.67 71.98 0.70 -2.84 16 2 C -0.10 -3.08 5.19 30.59 0.16 -2.93 16 3 C -0.09 -2.71 2.14 -10.71 -0.02 -2.73 16 4 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 5 C 0.12 3.88 5.02 86.36 0.43 4.32 16 6 N -0.59 -17.71 2.98 -823.78 -2.45 -20.16 16 7 C 0.59 17.87 7.68 86.63 0.67 18.54 16 8 O -0.55 -18.93 16.30 -4.05 -0.07 -18.99 16 9 C -0.05 -1.22 6.87 24.27 0.17 -1.05 16 10 C -0.12 -2.62 10.60 22.32 0.24 -2.38 16 11 C -0.12 -2.39 10.59 22.32 0.24 -2.16 16 12 C -0.07 -1.43 7.14 24.26 0.17 -1.26 16 13 C 0.61 12.56 8.08 86.63 0.70 13.26 16 14 N -0.82 -11.29 8.87 -175.98 -1.56 -12.85 16 15 O -0.55 -14.64 17.70 -4.08 -0.07 -14.72 16 16 O -0.14 -3.19 6.81 -7.34 -0.05 -3.24 16 17 C 0.11 3.05 6.03 86.22 0.52 3.57 16 18 C -0.14 -4.01 5.76 30.53 0.18 -3.84 16 19 C 0.17 5.74 2.53 45.02 0.11 5.86 16 20 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 21 N -0.72 -31.47 3.72 -322.81 -1.20 -32.68 16 22 C -0.22 -11.07 9.93 84.03 0.83 -10.23 16 23 H 0.08 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.97 -55.83 13.06 21.65 0.28 -55.54 16 26 Si 0.96 43.58 29.55 68.60 2.03 45.60 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 28 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.26 6.70 -2.39 -0.02 1.25 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.64 7.69 -2.38 -0.02 1.62 16 35 H 0.05 2.02 6.64 -2.39 -0.02 2.00 16 36 H 0.09 2.87 5.75 -2.39 -0.01 2.85 16 37 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.42 4.82 8.59 -92.71 -0.80 4.02 16 40 H 0.42 4.24 8.93 -92.71 -0.83 3.41 16 41 H 0.11 2.79 3.76 -57.08 -0.21 2.58 16 42 H 0.06 2.12 7.74 -2.39 -0.02 2.10 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.37 17.98 5.94 -92.70 -0.55 17.43 16 46 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -65.28 373.96 1.13 -64.15 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -1.33 Total: 35.55 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.55 Total: 12.88 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.93 Total: -121.23 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.19 Total: -36.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.28 1.13 -64.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037895733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.718 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds