Wall clock time and date at job start Tue Mar 31 2020 18:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46628 * 2 1 4 4 H 1.08997 * 109.49902 * 304.93606 * 3 2 1 5 5 C 1.53196 * 109.49721 * 65.00034 * 3 2 1 6 6 N 1.46925 * 108.77220 * 174.58378 * 5 3 2 7 7 C 1.34773 * 120.62809 * 126.37160 * 6 5 3 8 8 O 1.21685 * 120.00102 * 352.56209 * 7 6 5 9 9 C 1.46768 * 120.00041 * 172.55824 * 7 6 5 10 10 C 1.36063 * 125.65877 * 172.30218 * 9 7 6 11 11 C 1.41726 * 106.63118 * 179.97438 * 10 9 7 12 12 C 1.47488 * 126.77577 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99956 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99723 * 359.97438 * 12 11 10 15 15 C 1.37818 * 106.45034 * 359.97438 * 11 10 9 16 16 O 1.33496 * 108.34011 * 359.77560 * 15 11 10 17 17 C 1.46920 * 118.74207 * 306.38845 * 6 5 3 18 18 C 1.53195 * 108.77326 * 53.61287 * 17 6 5 19 19 C 1.53043 * 109.49296 * 184.83620 * 3 2 1 20 20 H 1.08998 * 109.45933 * 58.66959 * 19 3 2 21 21 N 1.46490 * 109.46132 * 298.70482 * 19 3 2 22 22 C 1.36937 * 119.99997 * 155.00219 * 21 19 3 23 23 H 1.08000 * 120.00124 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00152 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00359 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47345 * 89.99598 * 26 24 22 28 28 H 1.48497 * 109.47496 * 210.00345 * 26 24 22 29 29 H 1.48507 * 109.46874 * 330.00228 * 26 24 22 30 30 H 1.09004 * 109.46864 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47528 * 299.99879 * 1 2 3 32 32 H 1.08999 * 109.47338 * 60.00399 * 1 2 3 33 33 H 1.08998 * 109.47019 * 240.00120 * 2 1 3 34 34 H 1.08999 * 109.47338 * 119.99600 * 2 1 3 35 35 H 1.09005 * 109.58649 * 54.79427 * 5 3 2 36 36 H 1.08998 * 109.70189 * 294.44206 * 5 3 2 37 37 H 1.08000 * 126.68034 * 359.93073 * 10 9 7 38 38 H 0.97006 * 119.99616 * 0.02562 * 13 12 11 39 39 H 0.97001 * 119.99814 * 179.97438 * 13 12 11 40 40 H 1.07990 * 125.82951 * 179.97438 * 15 11 10 41 41 H 1.08995 * 109.58918 * 173.39920 * 17 6 5 42 42 H 1.09001 * 109.59111 * 293.82503 * 17 6 5 43 43 H 1.08995 * 109.49979 * 65.31394 * 18 17 6 44 44 H 1.09007 * 109.49933 * 185.41498 * 18 17 6 45 45 H 0.97006 * 120.00500 * 334.99680 * 21 19 3 46 46 H 0.97000 * 119.99967 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6349 2.1281 1.3088 6 7 2.2413 3.4657 1.3493 7 6 1.4813 4.5580 1.5629 8 8 0.2687 4.4598 1.5894 9 6 2.1161 5.8660 1.7635 10 6 1.4669 7.0593 1.8400 11 6 2.4611 8.0500 2.0372 12 6 2.2447 9.5018 2.1808 13 7 3.2960 10.3249 2.3646 14 8 1.1178 9.9561 2.1332 15 6 3.6699 7.3888 2.0694 16 8 3.4393 6.0837 1.9091 17 6 3.6919 3.5900 1.1523 18 6 4.0739 2.8882 -0.1548 19 6 3.5655 1.4450 -0.1216 20 1 3.8574 0.9361 -1.0403 21 7 4.1479 0.7486 1.0281 22 6 5.3860 0.1729 0.9245 23 1 5.9330 0.2318 -0.0048 24 6 5.9381 -0.4866 2.0141 25 7 5.2718 -0.5580 3.1470 26 14 7.6274 -1.2714 1.8732 27 1 8.6662 -0.2833 2.2601 28 1 7.7033 -2.4484 2.7754 29 1 7.8558 -1.7064 0.4717 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9906 1.5397 2.1547 36 1 0.5496 2.2172 1.3564 37 1 0.4017 7.2203 1.7645 38 1 4.1950 9.9624 2.4022 39 1 3.1537 11.2798 2.4587 40 1 4.6380 7.8477 2.2047 41 1 3.9638 4.6439 1.0941 42 1 4.2155 3.1210 1.9854 43 1 3.6217 3.4140 -0.9956 44 1 5.1584 2.8894 -0.2650 45 1 3.6566 0.6954 1.8628 46 1 5.6574 -1.0191 3.9082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:24 Heat of formation + Delta-G solvation = -43.390123 kcal Electronic energy + Delta-G solvation = -29679.745789 eV Core-core repulsion = 25571.410518 eV Total energy + Delta-G solvation = -4108.335271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.09766 -39.97842 -39.39108 -37.88031 -34.65033 -34.16388 -33.78695 -33.16795 -31.76295 -30.44015 -29.46645 -28.43617 -25.51958 -24.41396 -23.83382 -23.55695 -22.57175 -21.09500 -20.77179 -19.94600 -18.86082 -17.94805 -17.44712 -17.07564 -16.91947 -16.67397 -16.12219 -15.85586 -15.09797 -14.81032 -14.61915 -14.40539 -14.11024 -13.97822 -13.74291 -13.54723 -13.32226 -13.15183 -13.07652 -12.86256 -12.55302 -12.24029 -11.72249 -11.46726 -11.12596 -10.99079 -10.84166 -10.76365 -10.50320 -10.38019 -10.31247 -10.26359 -10.20781 -10.10125 -9.98112 -9.82843 -9.59167 -9.04747 -8.96042 -8.32046 -7.01963 -5.83035 -3.11644 0.75862 1.36168 2.33647 2.95623 3.00825 3.20128 3.28736 3.37910 3.44242 3.45626 4.18203 4.32255 4.53588 4.58654 4.99631 5.18213 5.23019 5.24501 5.30887 5.38805 5.51285 5.55120 5.63996 5.67680 5.76426 5.79709 5.88778 5.93086 6.04828 6.12487 6.19270 6.31277 6.33893 6.37593 6.38154 6.44390 6.54388 6.61034 6.68041 6.72875 6.89700 6.92557 6.95474 7.52174 7.64777 7.89373 8.11555 8.35330 9.47072 10.03324 10.38426 11.39279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.003243 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.404316 B = 8632.980192 C =10265.447399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.595 3.405 8 O -0.529 6.529 9 C -0.063 4.063 10 C -0.075 4.075 11 C -0.245 4.245 12 C 0.595 3.405 13 N -0.852 5.852 14 O -0.536 6.536 15 C 0.034 3.966 16 O -0.136 6.136 17 C 0.104 3.896 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.169 0.831 38 H 0.400 0.600 39 H 0.407 0.593 40 H 0.216 0.784 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 15.860 -3.764 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.382 3.618 8 O -0.408 6.408 9 C -0.114 4.114 10 C -0.096 4.096 11 C -0.250 4.250 12 C 0.381 3.619 13 N -0.416 5.416 14 O -0.413 6.413 15 C -0.039 4.039 16 O -0.030 6.030 17 C -0.017 4.017 18 C -0.190 4.190 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.187 0.813 38 H 0.228 0.772 39 H 0.238 0.762 40 H 0.233 0.767 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.218 15.528 -3.856 16.320 hybrid contribution 1.488 -0.008 0.368 1.533 sum -1.730 15.521 -3.488 16.002 Atomic orbital electron populations 1.21861 0.96751 1.01091 1.01414 1.21418 0.94322 0.95584 1.03451 1.21759 0.97423 0.96250 0.96886 0.91388 1.21812 0.98905 0.80816 0.98785 1.48057 1.09160 1.06346 1.68320 1.16673 0.85985 0.81237 0.77889 1.90858 1.12372 1.84237 1.53326 1.22143 0.80148 0.96497 1.12652 1.21795 1.01201 0.88908 0.97729 1.20576 0.93908 0.94674 1.15824 1.17253 0.84562 0.84869 0.75248 1.43660 1.09426 1.11307 1.77207 1.90851 1.23013 1.77200 1.50246 1.25180 0.99463 0.81455 0.97787 1.84295 1.25866 1.25268 1.67551 1.22144 0.78406 1.00989 1.00184 1.22537 1.01898 0.99244 0.95326 1.20235 0.89715 0.90614 0.92696 0.92980 1.42477 1.19035 1.64022 1.10561 1.19207 0.93528 1.27060 0.97075 0.91256 1.24701 0.98520 1.01461 0.96034 1.69647 1.38041 1.48077 1.02243 0.86243 0.84402 0.78763 0.77061 1.21853 1.21896 1.20855 0.93122 0.92761 0.93317 0.91940 0.90438 0.90244 0.89253 0.81315 0.77197 0.76192 0.76722 0.89517 0.89379 0.93292 0.90567 0.78106 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.10 -1.63 2.14 -90.49 -0.19 -1.82 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.94 5.04 -3.71 -0.02 1.92 16 6 N -0.59 -9.48 2.97 -174.28 -0.52 -10.00 16 7 C 0.60 9.75 7.65 -12.82 -0.10 9.65 16 8 O -0.53 -9.87 16.29 5.20 0.08 -9.78 16 9 C -0.06 -0.88 6.73 -36.92 -0.25 -1.13 16 10 C -0.08 -0.99 10.42 -39.03 -0.41 -1.40 16 11 C -0.25 -2.59 6.16 -104.95 -0.65 -3.23 16 12 C 0.59 6.25 8.09 -12.49 -0.10 6.14 16 13 N -0.85 -4.58 8.86 30.45 0.27 -4.31 16 14 O -0.54 -8.01 17.77 5.28 0.09 -7.92 16 15 C 0.03 0.27 11.64 30.58 0.36 0.63 16 16 O -0.14 -1.57 7.18 6.18 0.04 -1.53 16 17 C 0.10 1.63 5.83 -3.71 -0.02 1.61 16 18 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 19 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -15.91 3.72 -53.39 -0.20 -16.11 16 22 C -0.24 -6.00 9.93 -15.06 -0.15 -6.15 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 26 Si 0.90 21.28 29.55 -169.99 -5.02 16.25 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 35 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 36 H 0.09 1.46 5.72 -51.93 -0.30 1.16 16 37 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 38 H 0.40 0.81 7.78 -40.82 -0.32 0.49 16 39 H 0.41 1.71 8.93 -40.82 -0.36 1.35 16 40 H 0.22 0.55 7.46 -52.49 -0.39 0.15 16 41 H 0.09 1.19 4.25 -53.05 -0.23 0.97 16 42 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 45 H 0.38 9.14 5.94 -40.82 -0.24 8.90 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -33.17 373.00 -6.89 -40.06 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.26 Total: 10.64 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.73 Total: 2.80 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.22 Total: -19.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.17 -6.89 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.335 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds