Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46775 * 2 1 4 4 H 1.09001 * 109.49779 * 55.06116 * 3 2 1 5 5 C 1.53191 * 109.49621 * 295.00064 * 3 2 1 6 6 N 1.46932 * 108.77488 * 185.38219 * 5 3 2 7 7 C 1.34778 * 120.63075 * 233.58666 * 6 5 3 8 8 O 1.21683 * 119.99758 * 7.51856 * 7 6 5 9 9 C 1.46771 * 120.00066 * 187.51502 * 7 6 5 10 10 C 1.36060 * 125.65400 * 187.61531 * 9 7 6 11 11 C 1.41732 * 106.62737 * 180.02562 * 10 9 7 12 12 C 1.47481 * 126.77603 * 179.73617 * 11 10 9 13 13 N 1.34776 * 120.00086 * 180.02562 * 12 11 10 14 14 O 1.21605 * 120.00284 * 0.02562 * 12 11 10 15 15 C 1.37808 * 106.44843 * 0.02562 * 11 10 9 16 16 O 1.33501 * 108.34550 * 359.97438 * 15 11 10 17 17 C 1.46926 * 118.73932 * 53.85852 * 6 5 3 18 18 C 1.53626 * 108.54384 * 306.09596 * 17 6 5 19 19 C 1.53037 * 109.52587 * 175.14511 * 3 2 1 20 20 H 1.09001 * 109.45854 * 61.31041 * 19 3 2 21 21 N 1.46494 * 109.46104 * 301.34240 * 19 3 2 22 22 C 1.36942 * 120.00241 * 154.99971 * 21 19 3 23 23 H 1.07995 * 120.00041 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00093 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00147 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47071 * 90.00156 * 26 24 22 28 28 H 1.48501 * 109.47195 * 209.99771 * 26 24 22 29 29 H 1.48499 * 109.47283 * 330.00200 * 26 24 22 30 30 H 1.08990 * 109.47620 * 60.00318 * 1 2 3 31 31 H 1.09005 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47250 * 299.99572 * 1 2 3 33 33 H 1.08994 * 109.47339 * 240.00249 * 2 1 3 34 34 H 1.08997 * 109.47414 * 119.99319 * 2 1 3 35 35 H 1.08998 * 109.58845 * 65.59794 * 5 3 2 36 36 H 1.08996 * 109.58882 * 305.16398 * 5 3 2 37 37 H 1.08003 * 126.68970 * 0.02566 * 10 9 7 38 38 H 0.97001 * 120.00316 * 0.02562 * 13 12 11 39 39 H 0.97002 * 120.00064 * 179.97438 * 13 12 11 40 40 H 1.08004 * 125.83114 * 179.97438 * 15 11 10 41 41 H 1.09001 * 109.58197 * 65.93097 * 17 6 5 42 42 H 1.09000 * 109.58242 * 186.35368 * 17 6 5 43 43 H 1.09003 * 109.63006 * 294.86493 * 18 17 6 44 44 H 1.08997 * 109.43286 * 174.72239 * 18 17 6 45 45 H 0.97002 * 120.00002 * 334.99690 * 21 19 3 46 46 H 0.97000 * 120.00385 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6349 2.1280 -1.3088 6 7 2.2407 3.4660 -1.3490 7 6 1.4802 4.5579 -1.5634 8 8 0.2677 4.4593 -1.5895 9 6 2.1147 5.8659 -1.7654 10 6 1.4649 7.0588 -1.8444 11 6 2.4589 8.0497 -2.0420 12 6 2.2415 9.5005 -2.1929 13 7 3.2926 10.3240 -2.3761 14 8 1.1139 9.9540 -2.1519 15 6 3.6679 7.3891 -2.0718 16 8 3.4383 6.0847 -1.9043 17 6 3.6920 3.5905 -1.1571 18 6 4.0732 2.8891 0.1555 19 6 3.5654 1.4458 0.1221 20 1 3.9992 0.9280 -0.7334 21 7 3.9577 0.7620 1.3568 22 6 5.1964 0.1868 1.4571 23 1 5.8840 0.2370 0.6258 24 6 5.5683 -0.4607 2.6272 25 7 6.7587 -1.0139 2.7235 26 14 4.3793 -0.5469 4.0654 27 1 3.5465 -1.7707 3.9465 28 1 5.1437 -0.5901 5.3378 29 1 3.5023 0.6515 4.0552 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.5495 2.2168 -1.3541 36 1 1.9912 1.5401 -2.1546 37 1 0.3994 7.2193 -1.7710 38 1 4.1921 9.9623 -2.4092 39 1 3.1496 11.2782 -2.4758 40 1 4.6361 7.8482 -2.2075 41 1 4.2125 3.1194 -1.9909 42 1 3.9642 4.6445 -1.1023 43 1 3.6205 3.4147 0.9964 44 1 5.1576 2.8909 0.2659 45 1 3.3400 0.7166 2.1033 46 1 7.0187 -1.4661 3.5413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = -41.027620 kcal Electronic energy + Delta-G solvation = -29306.192616 eV Core-core repulsion = 25197.959791 eV Total energy + Delta-G solvation = -4108.232825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25313 -40.13180 -39.48616 -37.99469 -35.05312 -34.28549 -33.94142 -33.31996 -31.85214 -30.64783 -29.96048 -28.82325 -25.65610 -24.54782 -23.99990 -23.24162 -22.09895 -21.17587 -20.87507 -20.17348 -19.69881 -18.36589 -17.60164 -17.21764 -17.12225 -16.84857 -16.27492 -16.06060 -15.25398 -14.98670 -14.72626 -14.51614 -14.24286 -14.06374 -13.82948 -13.63114 -13.46214 -13.30034 -13.06197 -12.99565 -12.73377 -12.41133 -11.91808 -11.84496 -11.46830 -11.07083 -11.04142 -10.84123 -10.60720 -10.54541 -10.42837 -10.38210 -10.30463 -10.18414 -10.16362 -9.79485 -9.62662 -9.20612 -8.97200 -8.64564 -7.32370 -5.82642 -3.18236 0.60472 1.22558 2.16239 2.77853 2.85430 3.04953 3.12233 3.33612 3.36987 3.42210 4.03639 4.16520 4.43771 4.54203 4.82545 4.96975 5.02626 5.07944 5.11378 5.19545 5.27042 5.37001 5.45399 5.48965 5.52772 5.64062 5.72043 5.78874 5.90014 5.93992 6.01655 6.04267 6.18007 6.20783 6.28134 6.29916 6.31825 6.42222 6.49211 6.66004 6.73373 6.83677 6.88804 7.24497 7.80509 7.89124 7.92728 8.36468 9.14596 9.87477 10.07233 11.35563 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002864 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.842623 B = 9773.110363 C =10899.280035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.071 0.929 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.599 3.401 8 O -0.523 6.523 9 C -0.068 4.068 10 C -0.071 4.071 11 C -0.244 4.244 12 C 0.594 3.406 13 N -0.851 5.851 14 O -0.535 6.535 15 C 0.036 3.964 16 O -0.139 6.139 17 C 0.097 3.903 18 C -0.150 4.150 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.745 5.745 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.170 0.830 38 H 0.400 0.600 39 H 0.407 0.593 40 H 0.218 0.782 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 17.257 -12.267 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.327 5.327 7 C 0.386 3.614 8 O -0.402 6.402 9 C -0.119 4.119 10 C -0.092 4.092 11 C -0.248 4.248 12 C 0.380 3.620 13 N -0.415 5.415 14 O -0.412 6.412 15 C -0.036 4.036 16 O -0.033 6.033 17 C -0.026 4.026 18 C -0.191 4.191 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.386 5.386 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.188 0.812 38 H 0.228 0.772 39 H 0.239 0.761 40 H 0.234 0.766 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.364 16.914 -12.242 21.828 hybrid contribution -0.086 0.371 1.164 1.225 sum -6.451 17.285 -11.078 21.520 Atomic orbital electron populations 1.21862 0.96548 1.01255 1.01527 1.21457 0.94602 0.95514 1.03500 1.21845 0.97683 0.96405 0.96997 0.91081 1.21842 0.99621 0.80673 0.98053 1.48089 1.08992 1.06512 1.69090 1.16666 0.85974 0.81205 0.77553 1.90876 1.12356 1.84156 1.52780 1.22066 0.80150 0.96434 1.13240 1.21827 1.01310 0.88888 0.97203 1.20596 0.93890 0.94778 1.15567 1.17245 0.84617 0.84828 0.75342 1.43657 1.09349 1.11430 1.77105 1.90863 1.22960 1.77168 1.50189 1.25196 0.99518 0.81347 0.97585 1.84238 1.25782 1.25482 1.67815 1.22393 0.78557 1.02270 0.99344 1.22736 1.02703 0.98704 0.94998 1.20171 0.90627 0.90619 0.90775 0.92386 1.42779 1.16623 1.66253 1.12977 1.19037 0.90617 1.27124 1.00450 0.89187 1.24651 0.96409 1.00236 0.97661 1.69692 1.19237 1.41515 1.27635 0.86607 0.80957 0.77858 0.83434 1.21030 1.21809 1.20347 0.92899 0.92980 0.93005 0.91829 0.90430 0.88727 0.90904 0.81236 0.77198 0.76111 0.76580 0.90876 0.88670 0.92240 0.89906 0.80580 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.16 0.36 -1.56 16 2 C -0.11 -1.63 5.31 -26.73 -0.14 -1.77 16 3 C -0.11 -1.62 1.92 -90.50 -0.17 -1.80 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.58 5.33 -3.71 -0.02 1.56 16 6 N -0.60 -7.92 2.97 -174.01 -0.52 -8.44 16 7 C 0.60 8.49 7.65 -12.81 -0.10 8.39 16 8 O -0.52 -8.76 16.29 5.20 0.08 -8.68 16 9 C -0.07 -0.81 6.74 -36.92 -0.25 -1.06 16 10 C -0.07 -0.83 10.42 -39.03 -0.41 -1.24 16 11 C -0.24 -2.24 6.16 -104.95 -0.65 -2.89 16 12 C 0.59 5.62 8.09 -12.49 -0.10 5.52 16 13 N -0.85 -3.78 8.86 30.45 0.27 -3.51 16 14 O -0.53 -7.52 17.77 5.27 0.09 -7.42 16 15 C 0.04 0.23 11.64 30.58 0.36 0.59 16 16 O -0.14 -1.30 7.17 6.20 0.04 -1.25 16 17 C 0.10 1.19 6.13 -3.48 -0.02 1.17 16 18 C -0.15 -2.33 5.67 -26.39 -0.15 -2.48 16 19 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.74 -16.26 4.14 -53.39 -0.22 -16.48 16 22 C -0.24 -6.40 10.41 -15.06 -0.16 -6.55 16 23 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -28.36 13.97 55.49 0.78 -27.58 16 26 Si 0.88 21.50 27.73 -169.99 -4.71 16.79 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 30 H 0.05 0.60 6.70 -51.93 -0.35 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.31 7.22 -51.93 -0.38 0.94 16 35 H 0.09 1.28 5.72 -51.93 -0.30 0.99 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 38 H 0.40 0.39 7.78 -40.82 -0.32 0.08 16 39 H 0.41 1.39 8.93 -40.82 -0.36 1.02 16 40 H 0.22 0.19 7.46 -52.48 -0.39 -0.20 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.05 4.23 -53.19 -0.22 0.83 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.36 7.98 5.37 -40.82 -0.22 7.76 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -35.49 373.52 -6.60 -42.09 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.35 Total: 7.78 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.69 Total: 1.07 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.31 Total: -56.00 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.22 Total: -17.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.49 -6.60 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.061 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds