Wall clock time and date at job start Tue Mar 31 2020 18:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46775 * 2 1 4 4 H 1.09001 * 109.49779 * 55.06116 * 3 2 1 5 5 C 1.53191 * 109.49621 * 295.00064 * 3 2 1 6 6 N 1.46932 * 108.77488 * 185.38219 * 5 3 2 7 7 C 1.34778 * 120.63075 * 233.58666 * 6 5 3 8 8 O 1.21683 * 119.99758 * 7.51856 * 7 6 5 9 9 C 1.46771 * 120.00066 * 187.51502 * 7 6 5 10 10 C 1.36060 * 125.65400 * 187.61531 * 9 7 6 11 11 C 1.41732 * 106.62737 * 180.02562 * 10 9 7 12 12 C 1.47481 * 126.77603 * 179.73617 * 11 10 9 13 13 N 1.34776 * 120.00086 * 180.02562 * 12 11 10 14 14 O 1.21605 * 120.00284 * 0.02562 * 12 11 10 15 15 C 1.37808 * 106.44843 * 0.02562 * 11 10 9 16 16 O 1.33501 * 108.34550 * 359.97438 * 15 11 10 17 17 C 1.46926 * 118.73932 * 53.85852 * 6 5 3 18 18 C 1.53626 * 108.54384 * 306.09596 * 17 6 5 19 19 C 1.53037 * 109.52587 * 175.14511 * 3 2 1 20 20 H 1.09001 * 109.45854 * 61.31041 * 19 3 2 21 21 N 1.46494 * 109.46104 * 301.34240 * 19 3 2 22 22 C 1.36942 * 120.00241 * 154.99971 * 21 19 3 23 23 H 1.07995 * 120.00041 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00093 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00147 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47071 * 90.00156 * 26 24 22 28 28 H 1.48501 * 109.47195 * 209.99771 * 26 24 22 29 29 H 1.48499 * 109.47283 * 330.00200 * 26 24 22 30 30 H 1.08990 * 109.47620 * 60.00318 * 1 2 3 31 31 H 1.09005 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47250 * 299.99572 * 1 2 3 33 33 H 1.08994 * 109.47339 * 240.00249 * 2 1 3 34 34 H 1.08997 * 109.47414 * 119.99319 * 2 1 3 35 35 H 1.08998 * 109.58845 * 65.59794 * 5 3 2 36 36 H 1.08996 * 109.58882 * 305.16398 * 5 3 2 37 37 H 1.08003 * 126.68970 * 0.02566 * 10 9 7 38 38 H 0.97001 * 120.00316 * 0.02562 * 13 12 11 39 39 H 0.97002 * 120.00064 * 179.97438 * 13 12 11 40 40 H 1.08004 * 125.83114 * 179.97438 * 15 11 10 41 41 H 1.09001 * 109.58197 * 65.93097 * 17 6 5 42 42 H 1.09000 * 109.58242 * 186.35368 * 17 6 5 43 43 H 1.09003 * 109.63006 * 294.86493 * 18 17 6 44 44 H 1.08997 * 109.43286 * 174.72239 * 18 17 6 45 45 H 0.97002 * 120.00002 * 334.99690 * 21 19 3 46 46 H 0.97000 * 120.00385 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6349 2.1280 -1.3088 6 7 2.2407 3.4660 -1.3490 7 6 1.4802 4.5579 -1.5634 8 8 0.2677 4.4593 -1.5895 9 6 2.1147 5.8659 -1.7654 10 6 1.4649 7.0588 -1.8444 11 6 2.4589 8.0497 -2.0420 12 6 2.2415 9.5005 -2.1929 13 7 3.2926 10.3240 -2.3761 14 8 1.1139 9.9540 -2.1519 15 6 3.6679 7.3891 -2.0718 16 8 3.4383 6.0847 -1.9043 17 6 3.6920 3.5905 -1.1571 18 6 4.0732 2.8891 0.1555 19 6 3.5654 1.4458 0.1221 20 1 3.9992 0.9280 -0.7334 21 7 3.9577 0.7620 1.3568 22 6 5.1964 0.1868 1.4571 23 1 5.8840 0.2370 0.6258 24 6 5.5683 -0.4607 2.6272 25 7 6.7587 -1.0139 2.7235 26 14 4.3793 -0.5469 4.0654 27 1 3.5465 -1.7707 3.9465 28 1 5.1437 -0.5901 5.3378 29 1 3.5023 0.6515 4.0552 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.5495 2.2168 -1.3541 36 1 1.9912 1.5401 -2.1546 37 1 0.3994 7.2193 -1.7710 38 1 4.1921 9.9623 -2.4092 39 1 3.1496 11.2782 -2.4758 40 1 4.6361 7.8482 -2.2075 41 1 4.2125 3.1194 -1.9909 42 1 3.9642 4.6445 -1.1023 43 1 3.6205 3.4147 0.9964 44 1 5.1576 2.8909 0.2659 45 1 3.3400 0.7166 2.1033 46 1 7.0187 -1.4661 3.5413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:31 Heat of formation + Delta-G solvation = -68.539600 kcal Electronic energy + Delta-G solvation = -29307.385625 eV Core-core repulsion = 25197.959791 eV Total energy + Delta-G solvation = -4109.425834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.00951 -41.23943 -40.22518 -39.25072 -36.41367 -35.40047 -34.94412 -34.05741 -33.62069 -31.68967 -31.33993 -29.92269 -26.98876 -25.44105 -25.02485 -24.59750 -23.30645 -22.23241 -21.94003 -21.29075 -20.69758 -19.59716 -19.04865 -18.04919 -17.82965 -17.63874 -17.18927 -16.97602 -16.73095 -16.14268 -16.02582 -15.61407 -15.41240 -15.20436 -14.88114 -14.75515 -14.68022 -14.55167 -14.36518 -14.07995 -13.95622 -13.70830 -13.26035 -13.07548 -12.90797 -12.63745 -12.56995 -12.12338 -12.11587 -11.84403 -11.66746 -11.56702 -11.41128 -11.38047 -11.22980 -11.13162 -10.87339 -10.73700 -10.03860 -9.67955 -9.25682 -7.98874 -5.30324 -0.13062 0.43303 1.37068 1.38996 1.39629 1.46710 1.82496 1.97685 2.27479 2.49874 2.49902 3.31036 3.33775 3.43262 3.53838 3.71148 3.84313 3.94273 4.01553 4.16952 4.28658 4.30390 4.34955 4.43003 4.48077 4.59898 4.63056 4.71928 4.77118 4.81008 4.93184 4.94796 4.99511 5.03656 5.16561 5.26253 5.32082 5.44011 5.47037 5.58323 5.61356 5.82166 5.84949 6.19729 6.25510 6.41487 6.83724 7.11382 7.27840 7.88431 8.06373 9.22590 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002864 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.842623 B = 9773.110363 C =10899.280035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.098 4.098 4 H 0.060 0.940 5 C 0.124 3.876 6 N -0.596 5.596 7 C 0.597 3.403 8 O -0.559 6.559 9 C -0.089 4.089 10 C -0.079 4.079 11 C -0.269 4.269 12 C 0.592 3.408 13 N -0.823 5.823 14 O -0.594 6.594 15 C 0.088 3.912 16 O -0.140 6.140 17 C 0.106 3.894 18 C -0.142 4.142 19 C 0.182 3.818 20 H 0.054 0.946 21 N -0.747 5.747 22 C -0.215 4.215 23 H 0.065 0.935 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.943 3.057 27 H -0.281 1.281 28 H -0.301 1.301 29 H -0.258 1.258 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.420 0.580 39 H 0.416 0.584 40 H 0.280 0.720 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.361 0.639 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 19.083 -13.393 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.078 0.922 5 C 0.002 3.998 6 N -0.326 5.326 7 C 0.387 3.613 8 O -0.440 6.440 9 C -0.139 4.139 10 C -0.101 4.101 11 C -0.273 4.273 12 C 0.379 3.621 13 N -0.388 5.388 14 O -0.475 6.475 15 C 0.015 3.985 16 O -0.034 6.034 17 C -0.016 4.016 18 C -0.183 4.183 19 C 0.074 3.926 20 H 0.072 0.928 21 N -0.389 5.389 22 C -0.346 4.346 23 H 0.083 0.917 24 C -0.252 4.252 25 N -0.634 5.634 26 Si 0.772 3.228 27 H -0.208 1.208 28 H -0.228 1.228 29 H -0.183 1.183 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.168 0.832 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.296 0.704 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.194 0.806 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.853 18.782 -13.409 23.808 hybrid contribution -0.146 -0.078 1.387 1.397 sum -5.999 18.704 -12.022 23.030 Atomic orbital electron populations 1.21808 0.94762 1.02078 1.01952 1.21416 0.96173 0.94868 1.02468 1.21705 0.95496 0.96886 0.97721 0.92155 1.21799 0.99704 0.80861 0.97442 1.48122 1.09288 1.06368 1.68858 1.16897 0.85660 0.81965 0.76825 1.90848 1.13862 1.84874 1.54398 1.21474 0.81262 0.95234 1.15980 1.21854 1.01222 0.90077 0.96929 1.20599 0.94444 0.94570 1.17735 1.17347 0.84651 0.85223 0.74901 1.43424 1.09267 1.11444 1.74649 1.90840 1.25396 1.78013 1.53299 1.26301 1.00607 0.79557 0.92000 1.84178 1.24203 1.27057 1.67932 1.22376 0.78040 1.03309 0.97852 1.22539 1.01644 0.97371 0.96741 1.20416 0.92459 0.91207 0.88563 0.92782 1.42808 1.15026 1.66498 1.14605 1.19007 0.91411 1.25120 0.99028 0.91723 1.25337 0.98050 1.01246 1.00612 1.69853 1.21527 1.43790 1.28277 0.85582 0.78983 0.78518 0.79701 1.20766 1.22767 1.18316 0.91717 0.91988 0.93337 0.91255 0.93019 0.88848 0.89170 0.83175 0.74756 0.75175 0.70441 0.89160 0.86737 0.93148 0.91152 0.80565 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.67 71.98 0.70 -2.77 16 2 C -0.11 -3.10 5.31 30.59 0.16 -2.94 16 3 C -0.10 -2.81 1.92 -10.72 -0.02 -2.83 16 4 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.08 5.33 86.36 0.46 3.54 16 6 N -0.60 -14.86 2.97 -822.65 -2.44 -17.30 16 7 C 0.60 16.42 7.65 86.47 0.66 17.08 16 8 O -0.56 -18.81 16.29 -4.29 -0.07 -18.88 16 9 C -0.09 -1.99 6.74 24.00 0.16 -1.83 16 10 C -0.08 -1.82 10.42 22.63 0.24 -1.59 16 11 C -0.27 -4.30 6.16 -20.08 -0.12 -4.43 16 12 C 0.59 10.15 8.09 86.68 0.70 10.85 16 13 N -0.82 -4.49 8.86 -175.84 -1.56 -6.05 16 14 O -0.59 -16.78 17.77 -4.05 -0.07 -16.85 16 15 C 0.09 0.68 11.64 67.72 0.79 1.47 16 16 O -0.14 -2.08 7.17 -0.75 -0.01 -2.09 16 17 C 0.11 2.34 6.13 86.51 0.53 2.87 16 18 C -0.14 -4.21 5.67 30.82 0.17 -4.03 16 19 C 0.18 6.12 2.19 45.02 0.10 6.22 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.75 -32.35 4.14 -322.83 -1.34 -33.68 16 22 C -0.21 -11.42 10.41 84.03 0.87 -10.55 16 23 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 24 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 25 N -0.98 -61.23 13.97 21.65 0.30 -60.93 16 26 Si 0.94 44.83 27.73 68.60 1.90 46.73 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 30 H 0.06 1.36 6.70 -2.39 -0.02 1.34 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.72 7.22 -2.39 -0.02 1.70 16 35 H 0.09 2.41 5.72 -2.39 -0.01 2.40 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.42 -1.32 7.78 -92.71 -0.72 -2.04 16 39 H 0.42 1.61 8.93 -92.71 -0.83 0.79 16 40 H 0.28 -1.66 7.46 -2.91 -0.02 -1.68 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.12 2.14 4.23 -22.29 -0.09 2.05 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.36 15.66 5.37 -92.71 -0.50 15.16 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.09 373.52 1.45 -80.64 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -1.14 Total: 20.33 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.87 Total: 8.08 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.03 Total: -117.96 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.15 Total: -37.82 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -82.09 1.45 -80.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.101 kcal (2) G-P(sol) polarization free energy of solvation -82.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds