Wall clock time and date at job start Tue Mar 31 2020 18:50:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52991 * 109.47072 * 2 1
4 4 H 1.08998 * 110.00544 * 311.50925 * 3 2 1
5 5 C 1.54337 * 109.99334 * 190.47346 * 3 2 1
6 6 H 1.09005 * 110.51204 * 336.97803 * 5 3 2
7 7 N 1.46498 * 111.00297 * 100.12773 * 5 3 2
8 8 C 1.34778 * 120.00123 * 200.24236 * 7 5 3
9 9 O 1.21522 * 120.00029 * 359.97438 * 8 7 5
10 10 C 1.48072 * 120.00266 * 179.97438 * 8 7 5
11 11 C 1.36172 * 119.71977 * 179.97438 * 10 8 7
12 12 C 1.41632 * 119.18868 * 179.97438 * 11 10 8
13 13 O 1.22259 * 120.65653 * 180.02562 * 12 11 10
14 14 C 1.41573 * 118.68864 * 359.97438 * 12 11 10
15 15 O 1.36012 * 120.31394 * 180.02562 * 14 12 11
16 16 C 1.42900 * 116.99970 * 180.02562 * 15 14 12
17 17 C 1.35857 * 119.37098 * 0.02562 * 14 12 11
18 18 N 1.35441 * 120.77731 * 359.74104 * 17 14 12
19 19 H 0.96997 * 119.29070 * 180.25411 * 18 17 14
20 20 C 1.55153 * 103.02484 * 218.66740 * 5 3 2
21 21 C 1.54912 * 101.57877 * 35.30695 * 20 5 3
22 22 N 1.47023 * 109.88436 * 72.60852 * 3 2 1
23 23 C 1.36941 * 125.64449 * 298.39881 * 22 3 2
24 24 H 1.07989 * 120.00345 * 46.91818 * 23 22 3
25 25 C 1.38816 * 119.99427 * 226.91421 * 23 22 3
26 26 N 1.31612 * 119.99668 * 192.98383 * 25 23 22
27 27 Si 1.86799 * 120.00059 * 12.99170 * 25 23 22
28 28 H 1.48500 * 109.46884 * 267.29175 * 27 25 23
29 29 H 1.48501 * 109.47361 * 27.28732 * 27 25 23
30 30 H 1.48499 * 109.47233 * 147.29223 * 27 25 23
31 31 H 1.09003 * 109.46879 * 158.57301 * 1 2 3
32 32 H 1.08996 * 109.46870 * 278.57546 * 1 2 3
33 33 H 1.09000 * 109.47047 * 38.57519 * 1 2 3
34 34 H 1.09000 * 109.47109 * 239.99892 * 2 1 3
35 35 H 1.08998 * 109.47072 * 120.00315 * 2 1 3
36 36 H 0.97003 * 120.00276 * 20.23492 * 7 5 3
37 37 H 1.07997 * 120.41226 * 359.97438 * 11 10 8
38 38 H 1.08998 * 109.47104 * 180.02562 * 16 15 14
39 39 H 1.09007 * 109.47263 * 300.00131 * 16 15 14
40 40 H 1.09005 * 109.47501 * 59.99718 * 16 15 14
41 41 H 1.07996 * 119.61030 * 179.97438 * 17 14 12
42 42 H 1.08998 * 111.00629 * 277.23684 * 20 5 3
43 43 H 1.08997 * 111.03733 * 153.39042 * 20 5 3
44 44 H 1.09005 * 110.36538 * 204.15466 * 21 20 5
45 45 H 1.08994 * 110.37184 * 81.83019 * 21 20 5
46 46 H 0.97002 * 119.99749 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5243 2.0202 -0.7670
5 6 3.5605 1.4646 -0.2636
6 1 4.0087 0.5080 0.0053
7 7 3.8461 1.7937 -1.6623
8 6 5.0406 1.4750 -2.1992
9 8 5.8808 0.9150 -1.5230
10 6 5.3291 1.8071 -3.6131
11 6 6.5380 1.4829 -4.1495
12 6 6.8018 1.8054 -5.5032
13 8 7.8778 1.5264 -6.0122
14 6 5.7946 2.4563 -6.2555
15 8 6.0124 2.7808 -7.5583
16 6 4.9479 3.4366 -8.2503
17 6 4.6083 2.7537 -5.6639
18 7 4.3794 2.4302 -4.3687
19 1 3.5233 2.6494 -3.9690
20 6 4.0624 2.5903 0.6787
21 6 3.1228 2.4171 1.8980
22 7 1.8170 2.0516 1.3194
23 6 0.5986 2.2424 1.9147
24 1 -0.1238 1.4400 1.9353
25 6 0.2924 3.4672 2.4917
26 7 -0.7561 3.5797 3.2793
27 14 1.3681 4.9557 2.1502
28 1 2.4097 5.0656 3.2030
29 1 2.0189 4.8024 0.8242
30 1 0.5311 6.1823 2.1521
31 1 -0.3633 -0.9567 -0.3754
32 1 -0.3633 0.1532 1.0162
33 1 -0.3633 0.8034 -0.6408
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 3.1756 2.2409 -2.2021
37 1 7.2865 0.9860 -3.5502
38 1 5.2519 3.6378 -9.2775
39 1 4.0661 2.7957 -8.2515
40 1 4.7134 4.3760 -7.7497
41 1 3.8374 3.2505 -6.2341
42 1 3.9314 3.5707 0.2207
43 1 5.1027 2.4292 0.9612
44 1 3.0437 3.3526 2.4519
45 1 3.4864 1.6206 2.5471
46 1 -0.9703 4.4357 3.6823
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087659538.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:50:27
Heat of formation + Delta-G solvation = -37.143992 kcal
Electronic energy + Delta-G solvation = -29303.544939 eV
Core-core repulsion = 25195.480520 eV
Total energy + Delta-G solvation = -4108.064418 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.73874 -40.12609 -38.64316 -38.03063 -37.82793 -34.60714 -32.74229 -32.38461
-31.88701 -31.08447 -29.48440 -28.03091 -27.32135 -25.21134 -24.05000 -23.44979
-22.19782 -21.47214 -20.71204 -20.23981 -19.54054 -18.34342 -17.87454 -17.08073
-16.64631 -16.52669 -16.44240 -15.72104 -15.49184 -15.14092 -14.83904 -14.55827
-14.47867 -14.35709 -14.14646 -13.83097 -13.42409 -13.08584 -13.01790 -12.78221
-12.58176 -12.40093 -12.09296 -11.94595 -11.80019 -11.64395 -11.35890 -11.09372
-10.97209 -10.69443 -10.56273 -10.36092 -10.20491 -10.06464 -9.78712 -9.77202
-9.55455 -9.17576 -8.65708 -8.00652 -6.77563 -6.11814 -3.71966 0.36405
0.84458 2.20209 2.54654 2.57443 2.88410 3.20354 3.31922 3.35930
3.42012 3.99529 4.16577 4.29774 4.37509 4.56682 4.71277 4.71517
4.79603 4.94703 4.99558 5.06500 5.16989 5.26085 5.36757 5.42554
5.65147 5.67516 5.74948 5.82263 5.90071 5.97302 6.06444 6.16923
6.24391 6.31096 6.34911 6.42841 6.47512 6.57812 6.68650 6.82823
6.86191 6.95050 7.10695 7.70975 7.74185 7.88634 8.27737 8.72902
9.50286 10.11782 11.00458
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.016630 B = 0.002800 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1683.277929 B = 9997.404394 C =10218.888995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.125 4.125
3 C 0.155 3.845
4 H 0.044 0.956
5 C 0.133 3.867
6 H 0.102 0.898
7 N -0.708 5.708
8 C 0.557 3.443
9 O -0.501 6.501
10 C 0.126 3.874
11 C -0.211 4.211
12 C 0.400 3.600
13 O -0.496 6.496
14 C -0.033 4.033
15 O -0.288 6.288
16 C 0.017 3.983
17 C 0.029 3.971
18 N -0.564 5.564
19 H 0.420 0.580
20 C -0.147 4.147
21 C 0.118 3.882
22 N -0.597 5.597
23 C -0.256 4.256
24 H 0.091 0.909
25 C 0.042 3.958
26 N -0.901 5.901
27 Si 0.889 3.111
28 H -0.285 1.285
29 H -0.269 1.269
30 H -0.302 1.302
31 H 0.033 0.967
32 H 0.075 0.925
33 H 0.049 0.951
34 H 0.045 0.955
35 H 0.062 0.938
36 H 0.394 0.606
37 H 0.170 0.830
38 H 0.103 0.897
39 H 0.055 0.945
40 H 0.055 0.945
41 H 0.171 0.829
42 H 0.068 0.932
43 H 0.073 0.927
44 H 0.047 0.953
45 H 0.036 0.964
46 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.795 -0.347 -17.961 18.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.165 4.165
3 C 0.048 3.952
4 H 0.062 0.938
5 C 0.029 3.971
6 H 0.120 0.880
7 N -0.359 5.359
8 C 0.340 3.660
9 O -0.374 6.374
10 C 0.014 3.986
11 C -0.239 4.239
12 C 0.290 3.710
13 O -0.380 6.380
14 C -0.084 4.084
15 O -0.200 6.200
16 C -0.078 4.078
17 C -0.098 4.098
18 N -0.177 5.177
19 H 0.258 0.742
20 C -0.186 4.186
21 C -0.007 4.007
22 N -0.324 5.324
23 C -0.383 4.383
24 H 0.108 0.892
25 C -0.160 4.160
26 N -0.541 5.541
27 Si 0.719 3.281
28 H -0.212 1.212
29 H -0.194 1.194
30 H -0.229 1.229
31 H 0.052 0.948
32 H 0.094 0.906
33 H 0.068 0.932
34 H 0.063 0.937
35 H 0.081 0.919
36 H 0.229 0.771
37 H 0.187 0.813
38 H 0.121 0.879
39 H 0.073 0.927
40 H 0.073 0.927
41 H 0.188 0.812
42 H 0.087 0.913
43 H 0.092 0.908
44 H 0.065 0.935
45 H 0.053 0.947
46 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 6.969 -0.817 -17.721 19.060
hybrid contribution -0.711 1.589 -0.204 1.753
sum 6.258 0.773 -17.926 19.002
Atomic orbital electron populations
1.21846 0.95373 0.99246 1.03658 1.21924 0.96969 0.97199 1.00357
1.21308 0.89677 0.93647 0.90549 0.93848 1.22266 0.97589 0.99327
0.77906 0.87958 1.46024 1.15373 1.60310 1.14204 1.17884 0.83012
0.80066 0.85046 1.90866 1.45659 1.40604 1.60321 1.20438 0.90801
0.96025 0.91332 1.22489 0.97000 1.07370 0.97007 1.16803 0.87077
0.79916 0.87223 1.90862 1.24913 1.49556 1.72647 1.20432 0.95732
1.05471 0.86779 1.86283 1.40192 1.74132 1.19354 1.23150 0.90446
0.96368 0.97829 1.21652 0.99061 1.03640 0.85436 1.40717 1.16425
1.51048 1.09542 0.74228 1.23214 0.99701 0.98282 0.97420 1.21919
0.86402 0.98628 0.93724 1.44483 1.01634 1.72812 1.13453 1.18702
0.90881 0.96462 1.32293 0.89193 1.25738 0.95436 0.97599 0.97204
1.69772 1.27864 1.25481 1.30970 0.86678 0.79647 0.82683 0.79069
1.21216 1.19375 1.22942 0.94840 0.90607 0.93205 0.93679 0.91928
0.77103 0.81259 0.87850 0.92664 0.92672 0.81238 0.91299 0.90809
0.93476 0.94656 0.92443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.34 9.12 37.16 0.34 -2.00 16
2 C -0.12 -1.93 5.40 -26.73 -0.14 -2.08 16
3 C 0.16 2.55 2.93 -66.95 -0.20 2.35 16
4 H 0.04 0.70 7.45 -51.93 -0.39 0.32 16
5 C 0.13 1.89 2.74 -66.09 -0.18 1.71 16
6 H 0.10 1.53 7.39 -51.93 -0.38 1.14 16
7 N -0.71 -7.63 5.20 -52.89 -0.28 -7.90 16
8 C 0.56 6.52 7.80 -12.23 -0.10 6.42 16
9 O -0.50 -7.64 16.00 5.35 0.09 -7.56 16
10 C 0.13 1.24 6.77 -82.53 -0.56 0.68 16
11 C -0.21 -2.54 9.53 -39.03 -0.37 -2.91 16
12 C 0.40 5.50 6.78 -37.02 -0.25 5.25 16
13 O -0.50 -8.81 17.71 -11.15 -0.20 -9.00 16
14 C -0.03 -0.35 6.71 -39.16 -0.26 -0.61 16
15 O -0.29 -3.10 10.33 -35.60 -0.37 -3.47 16
16 C 0.02 0.09 9.81 101.05 0.99 1.08 16
17 C 0.03 0.19 10.22 -16.81 -0.17 0.02 16
18 N -0.56 -3.60 5.26 -9.58 -0.05 -3.65 16
19 H 0.42 1.46 7.00 -40.82 -0.29 1.17 16
20 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16
21 C 0.12 2.29 6.25 -2.53 -0.02 2.27 16
22 N -0.60 -12.49 2.47 -162.57 -0.40 -12.90 16
23 C -0.26 -6.42 9.56 -15.06 -0.14 -6.56 16
24 H 0.09 2.40 5.23 -52.49 -0.27 2.13 16
25 C 0.04 1.13 5.48 -17.43 -0.10 1.03 16
26 N -0.90 -25.79 13.97 55.49 0.78 -25.01 16
27 Si 0.89 20.76 25.12 -169.99 -4.27 16.49 16
28 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16
29 H -0.27 -5.93 6.93 56.52 0.39 -5.54 16
30 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16
31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.08 1.46 5.53 -51.93 -0.29 1.17 16
33 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16
34 H 0.04 0.60 8.12 -51.93 -0.42 0.17 16
35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.39 3.05 6.54 -40.82 -0.27 2.79 16
37 H 0.17 2.12 7.58 -52.49 -0.40 1.73 16
38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16
39 H 0.05 0.19 7.66 -51.92 -0.40 -0.21 16
40 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16
41 H 0.17 0.46 6.21 -52.49 -0.33 0.13 16
42 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16
43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
44 H 0.05 1.00 4.20 -51.93 -0.22 0.78 16
45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
LS Contribution 368.16 15.07 5.55 5.55
Total: -1.00 -34.63 368.16 -6.61 -41.24
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: -6.14 Total: 2.05 kcal
Atomic # 6 Polarization: 5.49 SS G_CDS: -1.32 Total: 4.16 kcal
Atomic # 7 Polarization: -49.51 SS G_CDS: 0.05 Total: -49.47 kcal
Atomic # 8 Polarization: -19.55 SS G_CDS: -0.48 Total: -20.03 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -4.27 Total: 16.49 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -34.63 -6.61 -41.24 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087659538.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.098 kcal
(2) G-P(sol) polarization free energy of solvation -34.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.530 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.144 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds