Wall clock time and date at job start Tue Mar 31 2020 18:50:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52991 * 109.47072 * 2 1
4 4 H 1.08998 * 110.00544 * 311.50925 * 3 2 1
5 5 C 1.54337 * 109.99334 * 190.47346 * 3 2 1
6 6 H 1.09005 * 110.51204 * 336.97803 * 5 3 2
7 7 N 1.46498 * 111.00297 * 100.12773 * 5 3 2
8 8 C 1.34778 * 120.00123 * 200.24236 * 7 5 3
9 9 O 1.21522 * 120.00029 * 359.97438 * 8 7 5
10 10 C 1.48072 * 120.00266 * 179.97438 * 8 7 5
11 11 C 1.36172 * 119.71977 * 179.97438 * 10 8 7
12 12 C 1.41632 * 119.18868 * 179.97438 * 11 10 8
13 13 O 1.22259 * 120.65653 * 180.02562 * 12 11 10
14 14 C 1.41573 * 118.68864 * 359.97438 * 12 11 10
15 15 O 1.36012 * 120.31394 * 180.02562 * 14 12 11
16 16 C 1.42900 * 116.99970 * 180.02562 * 15 14 12
17 17 C 1.35857 * 119.37098 * 0.02562 * 14 12 11
18 18 N 1.35441 * 120.77731 * 359.74104 * 17 14 12
19 19 H 0.96997 * 119.29070 * 180.25411 * 18 17 14
20 20 C 1.55153 * 103.02484 * 218.66740 * 5 3 2
21 21 C 1.54912 * 101.57877 * 35.30695 * 20 5 3
22 22 N 1.47023 * 109.88436 * 72.60852 * 3 2 1
23 23 C 1.36941 * 125.64449 * 298.39881 * 22 3 2
24 24 H 1.07989 * 120.00345 * 46.91818 * 23 22 3
25 25 C 1.38816 * 119.99427 * 226.91421 * 23 22 3
26 26 N 1.31612 * 119.99668 * 192.98383 * 25 23 22
27 27 Si 1.86799 * 120.00059 * 12.99170 * 25 23 22
28 28 H 1.48500 * 109.46884 * 267.29175 * 27 25 23
29 29 H 1.48501 * 109.47361 * 27.28732 * 27 25 23
30 30 H 1.48499 * 109.47233 * 147.29223 * 27 25 23
31 31 H 1.09003 * 109.46879 * 158.57301 * 1 2 3
32 32 H 1.08996 * 109.46870 * 278.57546 * 1 2 3
33 33 H 1.09000 * 109.47047 * 38.57519 * 1 2 3
34 34 H 1.09000 * 109.47109 * 239.99892 * 2 1 3
35 35 H 1.08998 * 109.47072 * 120.00315 * 2 1 3
36 36 H 0.97003 * 120.00276 * 20.23492 * 7 5 3
37 37 H 1.07997 * 120.41226 * 359.97438 * 11 10 8
38 38 H 1.08998 * 109.47104 * 180.02562 * 16 15 14
39 39 H 1.09007 * 109.47263 * 300.00131 * 16 15 14
40 40 H 1.09005 * 109.47501 * 59.99718 * 16 15 14
41 41 H 1.07996 * 119.61030 * 179.97438 * 17 14 12
42 42 H 1.08998 * 111.00629 * 277.23684 * 20 5 3
43 43 H 1.08997 * 111.03733 * 153.39042 * 20 5 3
44 44 H 1.09005 * 110.36538 * 204.15466 * 21 20 5
45 45 H 1.08994 * 110.37184 * 81.83019 * 21 20 5
46 46 H 0.97002 * 119.99749 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5243 2.0202 -0.7670
5 6 3.5605 1.4646 -0.2636
6 1 4.0087 0.5080 0.0053
7 7 3.8461 1.7937 -1.6623
8 6 5.0406 1.4750 -2.1992
9 8 5.8808 0.9150 -1.5230
10 6 5.3291 1.8071 -3.6131
11 6 6.5380 1.4829 -4.1495
12 6 6.8018 1.8054 -5.5032
13 8 7.8778 1.5264 -6.0122
14 6 5.7946 2.4563 -6.2555
15 8 6.0124 2.7808 -7.5583
16 6 4.9479 3.4366 -8.2503
17 6 4.6083 2.7537 -5.6639
18 7 4.3794 2.4302 -4.3687
19 1 3.5233 2.6494 -3.9690
20 6 4.0624 2.5903 0.6787
21 6 3.1228 2.4171 1.8980
22 7 1.8170 2.0516 1.3194
23 6 0.5986 2.2424 1.9147
24 1 -0.1238 1.4400 1.9353
25 6 0.2924 3.4672 2.4917
26 7 -0.7561 3.5797 3.2793
27 14 1.3681 4.9557 2.1502
28 1 2.4097 5.0656 3.2030
29 1 2.0189 4.8024 0.8242
30 1 0.5311 6.1823 2.1521
31 1 -0.3633 -0.9567 -0.3754
32 1 -0.3633 0.1532 1.0162
33 1 -0.3633 0.8034 -0.6408
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 3.1756 2.2409 -2.2021
37 1 7.2865 0.9860 -3.5502
38 1 5.2519 3.6378 -9.2775
39 1 4.0661 2.7957 -8.2515
40 1 4.7134 4.3760 -7.7497
41 1 3.8374 3.2505 -6.2341
42 1 3.9314 3.5707 0.2207
43 1 5.1027 2.4292 0.9612
44 1 3.0437 3.3526 2.4519
45 1 3.4864 1.6206 2.5471
46 1 -0.9703 4.4357 3.6823
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087659538.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:50:26
Heat of formation + Delta-G solvation = -63.036595 kcal
Electronic energy + Delta-G solvation = -29304.667726 eV
Core-core repulsion = 25195.480520 eV
Total energy + Delta-G solvation = -4109.187206 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.56916 -41.12629 -39.71284 -38.96927 -38.78102 -35.85631 -34.28641 -33.94123
-32.76857 -32.04130 -30.93046 -28.75714 -28.35871 -26.53192 -25.30603 -24.21233
-23.64717 -22.58700 -21.83482 -21.38046 -20.56139 -19.22696 -18.85358 -18.68454
-17.95203 -17.35081 -17.16392 -16.86610 -16.35603 -16.21014 -16.07407 -15.68144
-15.58695 -15.34111 -15.22807 -14.76225 -14.49362 -14.40244 -14.25332 -14.09455
-13.85465 -13.76862 -13.56619 -13.14740 -13.00332 -12.67067 -12.39703 -12.33042
-12.26554 -12.19371 -11.86645 -11.77812 -11.59039 -11.46166 -11.23156 -10.74373
-10.64280 -10.56849 -10.24387 -8.79516 -8.53722 -8.11476 -5.70074 -0.53779
0.12273 1.35620 1.40842 1.42978 1.52941 1.60310 1.65405 2.30927
2.45376 2.54905 3.09213 3.21292 3.43518 3.53464 3.61365 3.67698
3.79519 3.82714 4.11362 4.30711 4.33604 4.40234 4.43360 4.47111
4.47382 4.58348 4.61993 4.71228 4.82603 4.86407 4.90317 4.96409
5.02890 5.10516 5.17195 5.24535 5.29394 5.39331 5.56452 5.59039
5.75969 5.99409 6.20150 6.27489 6.40592 6.79400 6.89620 6.89953
7.55689 8.25727 9.02977
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.016630 B = 0.002800 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1683.277929 B = 9997.404394 C =10218.888995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.120 4.120
3 C 0.154 3.846
4 H 0.059 0.941
5 C 0.149 3.851
6 H 0.100 0.900
7 N -0.692 5.692
8 C 0.566 3.434
9 O -0.535 6.535
10 C 0.148 3.852
11 C -0.229 4.229
12 C 0.378 3.622
13 O -0.568 6.568
14 C -0.061 4.061
15 O -0.324 6.324
16 C 0.005 3.995
17 C 0.074 3.926
18 N -0.534 5.534
19 H 0.442 0.558
20 C -0.138 4.138
21 C 0.109 3.891
22 N -0.612 5.612
23 C -0.235 4.235
24 H 0.065 0.935
25 C -0.017 4.017
26 N -0.953 5.953
27 Si 0.945 3.055
28 H -0.289 1.289
29 H -0.241 1.241
30 H -0.313 1.313
31 H 0.056 0.944
32 H 0.036 0.964
33 H 0.050 0.950
34 H 0.079 0.921
35 H 0.045 0.955
36 H 0.414 0.586
37 H 0.152 0.848
38 H 0.110 0.890
39 H 0.078 0.922
40 H 0.077 0.923
41 H 0.225 0.775
42 H 0.075 0.925
43 H 0.085 0.915
44 H 0.029 0.971
45 H 0.034 0.966
46 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.931 0.592 -20.481 21.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.160 4.160
3 C 0.048 3.952
4 H 0.077 0.923
5 C 0.044 3.956
6 H 0.118 0.882
7 N -0.344 5.344
8 C 0.350 3.650
9 O -0.410 6.410
10 C 0.033 3.967
11 C -0.257 4.257
12 C 0.274 3.726
13 O -0.459 6.459
14 C -0.112 4.112
15 O -0.237 6.237
16 C -0.089 4.089
17 C -0.054 4.054
18 N -0.147 5.147
19 H 0.284 0.716
20 C -0.177 4.177
21 C -0.015 4.015
22 N -0.339 5.339
23 C -0.364 4.364
24 H 0.082 0.918
25 C -0.213 4.213
26 N -0.597 5.597
27 Si 0.774 3.226
28 H -0.217 1.217
29 H -0.165 1.165
30 H -0.242 1.242
31 H 0.075 0.925
32 H 0.055 0.945
33 H 0.069 0.931
34 H 0.097 0.903
35 H 0.064 0.936
36 H 0.252 0.748
37 H 0.170 0.830
38 H 0.128 0.872
39 H 0.096 0.904
40 H 0.095 0.905
41 H 0.241 0.759
42 H 0.093 0.907
43 H 0.104 0.896
44 H 0.047 0.953
45 H 0.052 0.948
46 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 6.051 0.132 -20.270 21.154
hybrid contribution -0.582 1.207 0.611 1.473
sum 5.469 1.339 -19.659 20.449
Atomic orbital electron populations
1.21760 0.96071 1.00562 1.01255 1.21873 0.96207 0.96677 1.01207
1.21431 0.91492 0.93843 0.88455 0.92310 1.21897 0.95570 0.98789
0.79339 0.88156 1.45707 1.15603 1.60099 1.13021 1.17918 0.82568
0.79239 0.85257 1.90874 1.46838 1.42040 1.61272 1.19954 0.90548
0.95705 0.90489 1.22275 0.97940 1.08740 0.96711 1.17296 0.87272
0.80030 0.88017 1.90816 1.27542 1.53584 1.73921 1.20188 0.96365
1.07196 0.87422 1.86239 1.42937 1.75086 1.19468 1.23509 0.89987
0.97374 0.97989 1.22266 0.98337 1.00149 0.84688 1.40864 1.16331
1.48153 1.09387 0.71609 1.23133 0.99401 0.99131 0.96015 1.21992
0.86540 0.97631 0.95344 1.44553 1.00836 1.72973 1.15579 1.18645
0.91615 0.95387 1.30757 0.91753 1.26353 0.96841 1.00405 0.97749
1.69912 1.30616 1.25803 1.33400 0.85765 0.77788 0.79028 0.79996
1.21654 1.16479 1.24195 0.92519 0.94541 0.93137 0.90271 0.93566
0.74800 0.82987 0.87168 0.90354 0.90488 0.75885 0.90659 0.89605
0.95324 0.94794 0.92920
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.26 9.12 71.98 0.66 -3.60 16
2 C -0.12 -3.36 5.40 30.59 0.17 -3.20 16
3 C 0.15 4.52 2.93 45.34 0.13 4.65 16
4 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16
5 C 0.15 3.64 2.74 46.18 0.13 3.77 16
6 H 0.10 2.62 7.39 -2.38 -0.02 2.60 16
7 N -0.69 -11.39 5.20 -439.55 -2.29 -13.68 16
8 C 0.57 11.14 7.80 86.85 0.68 11.82 16
9 O -0.53 -15.08 16.00 -3.78 -0.06 -15.14 16
10 C 0.15 2.40 6.77 40.56 0.27 2.68 16
11 C -0.23 -5.42 9.53 22.63 0.22 -5.20 16
12 C 0.38 10.60 6.78 23.93 0.16 10.77 16
13 O -0.57 -21.78 17.71 8.97 0.16 -21.63 16
14 C -0.06 -1.18 6.71 22.54 0.15 -1.03 16
15 O -0.32 -6.51 10.33 -78.55 -0.81 -7.32 16
16 C 0.01 0.04 9.81 113.37 1.11 1.15 16
17 C 0.07 0.57 10.22 83.58 0.85 1.43 16
18 N -0.53 -3.81 5.26 -184.22 -0.97 -4.78 16
19 H 0.44 -0.21 7.00 -92.71 -0.65 -0.85 16
20 C -0.14 -3.87 6.77 31.99 0.22 -3.66 16
21 C 0.11 4.04 6.25 86.86 0.54 4.59 16
22 N -0.61 -24.58 2.47 -668.25 -1.65 -26.23 16
23 C -0.23 -11.80 9.56 84.03 0.80 -11.00 16
24 H 0.07 3.55 5.23 -2.92 -0.02 3.53 16
25 C -0.02 -0.90 5.48 84.86 0.46 -0.43 16
26 N -0.95 -56.21 13.97 21.65 0.30 -55.91 16
27 Si 0.95 42.44 25.12 68.60 1.72 44.16 16
28 H -0.29 -13.02 6.83 99.48 0.68 -12.34 16
29 H -0.24 -9.57 6.93 99.48 0.69 -8.88 16
30 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16
31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
32 H 0.04 1.40 5.53 -2.39 -0.01 1.39 16
33 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16
34 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16
35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
36 H 0.41 3.69 6.54 -92.71 -0.61 3.08 16
37 H 0.15 4.03 7.58 -2.91 -0.02 4.01 16
38 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16
39 H 0.08 0.14 7.66 -2.38 -0.02 0.12 16
40 H 0.08 0.16 7.66 -2.38 -0.02 0.14 16
41 H 0.22 -0.57 6.21 -2.91 -0.02 -0.59 16
42 H 0.07 2.05 7.97 -2.39 -0.02 2.03 16
43 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16
44 H 0.03 1.17 4.20 -2.38 -0.01 1.16 16
45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16
Total: -1.00 -83.29 368.16 2.71 -80.58
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: -0.26 Total: 7.23 kcal
Atomic # 6 Polarization: 6.16 SS G_CDS: 6.56 Total: 12.72 kcal
Atomic # 7 Polarization: -95.99 SS G_CDS: -4.60 Total: -100.59 kcal
Atomic # 8 Polarization: -43.38 SS G_CDS: -0.71 Total: -44.09 kcal
Atomic # 14 Polarization: 42.44 SS G_CDS: 1.72 Total: 44.16 kcal
Total: -83.29 2.71 -80.58 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087659538.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.539 kcal
(2) G-P(sol) polarization free energy of solvation -83.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.748 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds