Wall clock time and date at job start Tue Mar 31 2020 18:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21617 * 119.99548 * 359.97438 * 8 7 5 10 10 C 1.47334 * 120.00137 * 179.97438 * 8 7 5 11 11 C 1.39541 * 120.56062 * 0.02562 * 10 8 7 12 12 N 1.31608 * 120.67644 * 180.02562 * 11 10 8 13 13 C 1.32594 * 121.97619 * 359.97438 * 12 11 10 14 14 O 1.35522 * 119.47627 * 179.97438 * 13 12 11 15 15 C 1.38714 * 121.04997 * 0.02562 * 13 12 11 16 16 C 1.38816 * 119.20309 * 359.71967 * 15 13 12 17 17 O 1.35523 * 120.89781 * 180.29519 * 16 15 13 18 18 C 1.42896 * 117.00243 * 0.25341 * 17 16 15 19 19 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 20 20 C 1.54910 * 101.57974 * 35.30613 * 19 5 3 21 21 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 22 22 C 1.36937 * 125.64711 * 298.39400 * 21 3 2 23 23 H 1.08001 * 119.99698 * 137.66376 * 22 21 3 24 24 C 1.38811 * 120.00174 * 317.66370 * 22 21 3 25 25 N 1.31612 * 120.00077 * 165.29696 * 24 22 21 26 26 Si 1.86795 * 119.99943 * 345.29056 * 24 22 21 27 27 H 1.48500 * 109.46981 * 90.64905 * 26 24 22 28 28 H 1.48504 * 109.47384 * 330.65296 * 26 24 22 29 29 H 1.48495 * 109.47247 * 210.65317 * 26 24 22 30 30 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 31 31 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 32 32 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 33 33 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 34 34 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 35 35 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 36 36 H 1.08006 * 119.66136 * 0.02562 * 11 10 8 37 37 H 0.96701 * 113.99894 * 89.99468 * 14 13 12 38 38 H 1.08000 * 120.39794 * 180.02562 * 15 13 12 39 39 H 1.08998 * 109.47665 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.46688 * 299.99620 * 18 17 16 41 41 H 1.08999 * 109.47412 * 59.99442 * 18 17 16 42 42 H 1.09004 * 111.00712 * 277.23419 * 19 5 3 43 43 H 1.08998 * 111.00975 * 153.37963 * 19 5 3 44 44 H 1.09004 * 110.36479 * 204.15215 * 20 19 5 45 45 H 1.08999 * 110.36730 * 81.83661 * 20 19 5 46 46 H 0.97006 * 120.00357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0218 0.8700 -1.0808 10 6 5.6930 1.6801 -3.2435 11 6 4.8262 2.2897 -4.1514 12 7 5.2124 2.5393 -5.3845 13 6 6.4267 2.2280 -5.8167 14 8 6.7708 2.5077 -7.0973 15 6 7.3501 1.6198 -4.9791 16 6 6.9933 1.3403 -3.6670 17 8 7.8704 0.7523 -2.8175 18 6 9.1666 0.4441 -3.3341 19 6 3.9792 2.6198 0.8498 20 6 2.9122 2.4916 1.9656 21 7 1.6763 2.1015 1.2630 22 6 0.4009 2.3125 1.7146 23 1 0.1613 2.1437 2.7541 24 6 -0.5840 2.7434 0.8364 25 7 -1.8517 2.6712 1.1826 26 14 -0.1100 3.4258 -0.8366 27 1 -0.0756 2.3222 -1.8296 28 1 1.2314 4.0573 -0.7518 29 1 -1.1089 4.4403 -1.2584 30 1 -0.3633 0.6205 -0.8193 31 1 -0.3634 -1.0197 -0.1278 32 1 -0.3633 0.3992 0.9469 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.4039 2.1593 -2.0937 36 1 3.8282 2.5595 -3.8388 37 1 7.1639 3.3831 -7.2168 38 1 8.3365 1.3713 -5.3420 39 1 9.7678 -0.0214 -2.5531 40 1 9.0686 -0.2422 -4.1752 41 1 9.6522 1.3610 -3.6680 42 1 3.9008 3.5816 0.3429 43 1 4.9823 2.4713 1.2495 44 1 2.7755 3.4476 2.4712 45 1 3.2016 1.7214 2.6805 46 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087730028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:29 Heat of formation + Delta-G solvation = -66.195844 kcal Electronic energy + Delta-G solvation = -29908.948025 eV Core-core repulsion = 25799.623824 eV Total energy + Delta-G solvation = -4109.324201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20703 -40.85826 -39.83026 -39.34164 -37.84729 -35.68819 -34.28382 -33.74567 -32.80964 -32.07503 -30.80217 -28.73108 -28.31246 -26.37291 -25.30404 -24.12920 -23.37898 -22.41678 -22.01766 -21.24586 -20.37212 -19.20861 -18.69957 -18.49027 -17.93398 -17.58113 -17.09952 -16.69983 -16.36531 -16.04798 -16.00854 -15.82654 -15.50230 -15.17438 -15.11249 -14.82705 -14.55734 -14.12956 -14.00290 -13.81289 -13.64494 -13.44979 -13.11177 -13.00741 -12.96050 -12.58734 -12.54732 -12.49915 -12.31619 -12.08575 -11.89864 -11.69680 -11.58632 -11.26391 -11.22101 -10.60440 -10.39231 -10.32220 -10.20384 -9.93912 -8.63400 -8.14089 -5.58549 -0.60654 0.04577 1.31069 1.41869 1.51092 1.68930 1.96693 2.00377 2.41781 2.45450 2.63119 3.13409 3.32793 3.38138 3.55147 3.60759 3.68658 3.83586 4.02365 4.10990 4.17626 4.29193 4.32564 4.33866 4.37273 4.40342 4.50993 4.59625 4.61609 4.71889 4.76399 4.91880 5.02877 5.04735 5.10556 5.12695 5.19541 5.28893 5.37476 5.53733 5.81176 6.02232 6.05605 6.23767 6.42924 6.48636 6.71642 6.88170 7.13907 7.57049 8.25704 9.04282 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.003435 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.562048 B = 8148.457314 C = 9117.667240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.141 3.859 4 H 0.030 0.970 5 C 0.149 3.851 6 H 0.096 0.904 7 N -0.711 5.711 8 C 0.572 3.428 9 O -0.552 6.552 10 C -0.252 4.252 11 C 0.202 3.798 12 N -0.549 5.549 13 C 0.371 3.629 14 O -0.483 6.483 15 C -0.277 4.277 16 C 0.232 3.768 17 O -0.298 6.298 18 C 0.007 3.993 19 C -0.132 4.132 20 C 0.126 3.874 21 N -0.614 5.614 22 C -0.234 4.234 23 H 0.042 0.958 24 C 0.007 3.993 25 N -0.943 5.943 26 Si 0.927 3.073 27 H -0.261 1.261 28 H -0.257 1.257 29 H -0.314 1.314 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.404 0.596 36 H 0.184 0.816 37 H 0.429 0.571 38 H 0.182 0.818 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.373 -1.147 -15.656 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.047 0.953 5 C 0.044 3.956 6 H 0.114 0.886 7 N -0.363 5.363 8 C 0.360 3.640 9 O -0.430 6.430 10 C -0.259 4.259 11 C 0.043 3.957 12 N -0.272 5.272 13 C 0.195 3.805 14 O -0.295 6.295 15 C -0.299 4.299 16 C 0.176 3.824 17 O -0.207 6.207 18 C -0.087 4.087 19 C -0.171 4.171 20 C 0.001 3.999 21 N -0.341 5.341 22 C -0.363 4.363 23 H 0.059 0.941 24 C -0.191 4.191 25 N -0.586 5.586 26 Si 0.756 3.244 27 H -0.188 1.188 28 H -0.181 1.181 29 H -0.243 1.243 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.241 0.759 36 H 0.200 0.800 37 H 0.293 0.707 38 H 0.200 0.800 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 23.001 -1.710 -15.605 27.848 hybrid contribution -0.069 0.663 -0.366 0.760 sum 22.932 -1.048 -15.971 27.965 Atomic orbital electron populations 1.21951 0.96293 0.99457 1.03139 1.21795 0.96111 0.96562 1.00969 1.21468 0.91903 0.93042 0.90056 0.95306 1.21810 0.93095 0.99331 0.81378 0.88566 1.45847 1.14372 1.62578 1.13491 1.17846 0.81455 0.77972 0.86745 1.90801 1.53544 1.43659 1.55021 1.20435 0.95314 1.13587 0.96559 1.22848 0.98689 0.88200 0.85928 1.67267 1.18968 1.24076 1.16924 1.19199 0.87110 0.89926 0.84313 1.84661 1.82480 1.41753 1.20642 1.22266 1.04370 1.11233 0.92060 1.19292 0.88274 0.86239 0.88631 1.86368 1.24751 1.71693 1.37842 1.23614 0.80175 1.02357 1.02548 1.23075 0.99083 0.98111 0.96830 1.21871 0.85478 0.98172 0.94380 1.44601 1.01575 1.66549 1.21352 1.18090 0.83961 1.39289 0.94963 0.94062 1.25939 0.94760 0.97093 1.01288 1.69903 1.00198 1.50153 1.38346 0.86219 0.77696 0.78405 0.82117 1.18752 1.18103 1.24276 0.95199 0.93641 0.91203 0.91611 0.92325 0.75894 0.79971 0.70727 0.80036 0.86417 0.90582 0.90154 0.91213 0.89585 0.93225 0.94553 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 8.30 71.98 0.60 -5.97 16 2 C -0.12 -4.41 5.46 30.60 0.17 -4.24 16 3 C 0.14 5.54 2.16 45.34 0.10 5.64 16 4 H 0.03 1.20 3.34 -2.39 -0.01 1.20 16 5 C 0.15 4.95 2.76 46.18 0.13 5.08 16 6 H 0.10 3.29 7.40 -2.39 -0.02 3.28 16 7 N -0.71 -20.30 5.16 -440.26 -2.27 -22.57 16 8 C 0.57 16.79 7.76 86.64 0.67 17.46 16 9 O -0.55 -19.58 15.01 16.28 0.24 -19.34 16 10 C -0.25 -6.11 5.90 -19.92 -0.12 -6.22 16 11 C 0.20 4.30 10.71 85.04 0.91 5.22 16 12 N -0.55 -11.91 10.36 -307.95 -3.19 -15.10 16 13 C 0.37 6.53 7.73 84.69 0.65 7.18 16 14 O -0.48 -6.24 13.54 -88.25 -1.20 -7.43 16 15 C -0.28 -4.28 9.02 22.52 0.20 -4.08 16 16 C 0.23 4.98 6.74 23.06 0.16 5.13 16 17 O -0.30 -6.62 8.71 -67.90 -0.59 -7.21 16 18 C 0.01 0.07 9.84 113.37 1.12 1.19 16 19 C -0.13 -4.30 6.77 31.98 0.22 -4.08 16 20 C 0.13 4.81 7.23 86.86 0.63 5.44 16 21 N -0.61 -27.82 2.56 -668.25 -1.71 -29.54 16 22 C -0.23 -12.70 8.23 84.03 0.69 -12.01 16 23 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 24 C 0.01 0.39 3.61 84.86 0.31 0.70 16 25 N -0.94 -56.20 13.97 21.65 0.30 -55.89 16 26 Si 0.93 43.69 23.28 68.60 1.60 45.28 16 27 H -0.26 -11.50 6.09 99.48 0.61 -10.90 16 28 H -0.26 -11.40 7.10 99.48 0.71 -10.69 16 29 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 30 H 0.03 1.33 5.51 -2.39 -0.01 1.32 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 3.59 5.13 -2.39 -0.01 3.58 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.40 10.08 6.37 -92.70 -0.59 9.49 16 36 H 0.18 3.18 6.41 -2.91 -0.02 3.16 16 37 H 0.43 0.91 9.06 -74.06 -0.67 0.24 16 38 H 0.18 1.54 6.45 -2.91 -0.02 1.52 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.56 7.70 -2.39 -0.02 0.54 16 41 H 0.08 0.51 7.72 -2.39 -0.02 0.49 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -74.24 361.71 -0.71 -74.95 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.32 Total: 20.44 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.43 Total: 16.42 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -6.87 Total: -123.11 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.54 Total: -33.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.60 Total: 45.28 kcal Total: -74.24 -0.71 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087730028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.752 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds