Wall clock time and date at job start Tue Mar 31 2020 19:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46555 * 2 1 4 4 N 1.46505 * 109.47049 * 119.99357 * 2 1 3 5 5 C 1.46500 * 119.99869 * 121.46117 * 4 2 1 6 6 C 1.50699 * 109.46907 * 270.00377 * 5 4 2 7 7 H 1.07999 * 120.00320 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99942 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99833 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46525 * 60.00357 * 10 8 6 12 12 H 1.48497 * 109.46861 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47288 * 300.00276 * 10 8 6 14 14 C 1.34770 * 120.00237 * 301.45967 * 4 2 1 15 15 O 1.21286 * 120.00054 * 5.23693 * 14 4 2 16 16 C 1.50697 * 120.00034 * 184.95650 * 14 4 2 17 17 C 1.53003 * 109.47137 * 175.40635 * 16 14 4 18 18 N 1.46505 * 109.47162 * 180.02562 * 17 16 14 19 19 C 1.34739 * 120.00067 * 179.97438 * 18 17 16 20 20 O 1.34281 * 120.00085 * 4.88315 * 19 18 17 21 21 C 1.41519 * 119.99994 * 184.88692 * 19 18 17 22 22 N 1.33553 * 120.01912 * 172.56580 * 21 19 18 23 23 C 1.30905 * 121.63451 * 179.97438 * 22 21 19 24 24 C 1.39491 * 121.49216 * 0.02562 * 23 22 21 25 25 C 1.36515 * 119.85995 * 359.97438 * 24 23 22 26 26 C 1.40998 * 118.46343 * 359.74629 * 25 24 23 27 27 O 1.22432 * 120.70888 * 180.27063 * 26 25 24 28 28 H 1.08994 * 109.47407 * 306.45586 * 1 2 3 29 29 H 1.09004 * 109.47367 * 66.46387 * 1 2 3 30 30 H 1.09002 * 109.46648 * 186.45487 * 1 2 3 31 31 H 1.08993 * 109.47455 * 239.99967 * 2 1 3 32 32 H 1.09007 * 109.46807 * 184.77737 * 3 2 1 33 33 H 1.08999 * 109.46878 * 304.77438 * 3 2 1 34 34 H 1.08997 * 109.47282 * 64.78587 * 3 2 1 35 35 H 1.09007 * 109.47057 * 29.99650 * 5 4 2 36 36 H 1.08993 * 109.47445 * 149.99816 * 5 4 2 37 37 H 0.96995 * 119.99635 * 180.02562 * 9 8 6 38 38 H 1.09003 * 109.47392 * 295.40557 * 16 14 4 39 39 H 1.09000 * 109.47048 * 55.40348 * 16 14 4 40 40 H 1.08999 * 109.47187 * 299.99793 * 17 16 14 41 41 H 1.09000 * 109.47386 * 59.99920 * 17 16 14 42 42 H 0.97002 * 120.00105 * 359.97438 * 18 17 16 43 43 H 0.96701 * 116.99637 * 179.97438 * 20 19 18 44 44 H 1.08006 * 119.25247 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.07541 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.76950 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8868 -1.8627 1.0622 6 6 2.0419 -3.1088 0.9953 7 1 0.9657 -3.0350 1.0479 8 6 2.6428 -4.3431 0.8670 9 7 3.9534 -4.4330 0.8035 10 14 1.5956 -5.8877 0.7848 11 1 0.6867 -5.8077 -0.3869 12 1 2.4759 -7.0758 0.6476 13 1 0.7917 -6.0075 2.0276 14 6 1.6686 -0.2474 2.4201 15 8 0.8749 0.6629 2.5315 16 6 2.2590 -0.8871 3.6502 17 6 1.7901 -0.1296 4.8940 18 7 2.3645 -0.7511 6.0899 19 6 2.0880 -0.2488 7.3092 20 8 1.2096 0.7588 7.4368 21 6 2.7233 -0.7831 8.4553 22 7 2.5655 -0.1929 9.6429 23 6 3.1380 -0.6603 10.7234 24 6 3.9426 -1.7992 10.6872 25 6 4.1454 -2.4509 9.5049 26 6 3.5221 -1.9475 8.3447 27 8 3.6719 -2.5024 7.2637 28 1 -0.3634 0.6106 0.8265 29 1 -0.3634 0.4104 -0.9422 30 1 -0.3633 -1.0212 0.1155 31 1 1.8933 -0.5138 -0.8899 32 1 3.1265 1.4438 -0.0856 33 1 1.6083 1.9804 -0.8441 34 1 1.7482 1.9311 0.9297 35 1 3.4774 -1.7749 0.1503 36 1 3.5533 -1.9214 1.9226 37 1 4.3761 -5.3012 0.7129 38 1 1.9323 -1.9252 3.7123 39 1 3.3469 -0.8515 3.5917 40 1 2.1168 0.9085 4.8320 41 1 0.7022 -0.1652 4.9526 42 1 2.9440 -1.5243 6.0039 43 1 1.0434 1.0855 8.3317 44 1 2.9845 -0.1521 11.6640 45 1 4.4042 -2.1648 11.5926 46 1 4.7658 -3.3336 9.4600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116173473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:18 Heat of formation + Delta-G solvation = -84.631621 kcal Electronic energy + Delta-G solvation = -29020.298948 eV Core-core repulsion = 24910.175312 eV Total energy + Delta-G solvation = -4110.123637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11299 -41.10915 -40.05186 -38.40621 -37.39708 -36.82570 -35.12951 -33.81560 -33.22284 -32.00372 -30.29583 -28.91924 -28.00636 -26.69418 -24.98140 -24.45082 -23.80586 -23.37488 -22.54346 -19.83181 -19.77431 -18.79482 -18.52675 -17.96336 -17.59921 -17.29886 -17.16382 -16.99115 -16.46060 -16.30178 -16.16280 -15.78091 -15.43109 -14.95887 -14.85014 -14.51857 -14.29078 -14.25492 -14.00437 -13.88085 -13.66981 -13.40435 -13.35544 -13.27701 -13.05541 -12.99029 -12.75003 -12.70022 -12.59925 -12.18738 -12.12069 -11.78192 -11.66818 -11.56432 -11.44654 -10.65794 -10.51181 -10.43882 -9.94922 -9.45707 -8.55354 -8.23063 -6.37367 -0.71042 0.91917 1.16996 1.21277 1.39021 1.40654 1.47351 1.70858 2.19296 2.37812 2.56289 3.07809 3.10070 3.14613 3.54156 3.67725 3.87670 3.90674 4.12270 4.18021 4.22094 4.27715 4.36159 4.37848 4.42174 4.63933 4.71120 4.75778 4.78592 4.80790 4.97247 5.02069 5.04090 5.14276 5.16778 5.31047 5.33751 5.38730 5.43523 5.56334 5.65304 5.75729 5.91049 6.03408 6.35121 6.56000 6.80387 6.91538 7.10813 7.27096 7.38508 8.81849 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.003276 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.181601 B = 8544.514299 C =10553.337821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.593 5.593 5 C 0.250 3.750 6 C -0.546 4.546 7 H 0.053 0.947 8 C 0.023 3.977 9 N -0.918 5.918 10 Si 0.951 3.049 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.275 1.275 14 C 0.525 3.475 15 O -0.574 6.574 16 C -0.149 4.149 17 C 0.119 3.881 18 N -0.617 5.617 19 C 0.573 3.427 20 O -0.446 6.446 21 C -0.247 4.247 22 N -0.413 5.413 23 C 0.025 3.975 24 C -0.059 4.059 25 C -0.254 4.254 26 C 0.338 3.662 27 O -0.605 6.605 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.440 0.560 43 H 0.460 0.540 44 H 0.194 0.806 45 H 0.166 0.834 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 11.573 14.763 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.323 5.323 5 C 0.129 3.871 6 C -0.584 4.584 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.776 3.224 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.313 3.687 15 O -0.456 6.456 16 C -0.189 4.189 17 C -0.004 4.004 18 N -0.261 5.261 19 C 0.383 3.617 20 O -0.248 6.248 21 C -0.371 4.371 22 N -0.124 5.124 23 C -0.155 4.155 24 C -0.079 4.079 25 C -0.282 4.282 26 C 0.244 3.756 27 O -0.504 6.504 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.299 0.701 43 H 0.326 0.674 44 H 0.211 0.789 45 H 0.184 0.816 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.969 12.444 13.365 18.688 hybrid contribution 0.599 -2.366 0.207 2.449 sum -3.370 10.078 13.572 17.237 Atomic orbital electron populations 1.22092 0.94822 1.01262 1.03063 1.21106 0.94952 0.93403 0.87231 1.22068 1.00731 0.95067 1.03221 1.48289 1.49023 1.29667 1.05363 1.19131 0.89084 0.81548 0.97380 1.21648 0.93462 0.91934 1.51388 0.92853 1.25611 0.95888 1.01768 0.94508 1.69988 1.09733 1.25981 1.49991 0.85715 0.78780 0.79075 0.78793 1.19501 1.20814 1.20013 1.20131 0.81195 0.82507 0.84839 1.90557 1.35849 1.32055 1.87136 1.21706 1.03327 1.01760 0.92079 1.21622 1.00148 0.97610 0.81009 1.46288 1.44796 1.31773 1.03195 1.19229 0.78660 0.78670 0.85142 1.83868 1.53392 1.45105 1.42391 1.19335 1.18857 1.06165 0.92772 1.66781 1.18544 1.29423 0.97613 1.22888 0.99109 0.96894 0.96598 1.22389 0.93570 0.93536 0.98379 1.22720 1.06429 1.04335 0.94681 1.17957 0.82024 0.85676 0.89971 1.90376 1.65907 1.63270 1.30806 0.91503 0.90251 0.94590 0.90224 0.92968 0.89785 0.92292 0.96128 0.95038 0.92374 0.88393 0.87906 0.87893 0.88516 0.70062 0.67385 0.78935 0.81610 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 8.96 71.98 0.65 -4.39 16 2 C 0.14 4.68 3.27 44.99 0.15 4.83 16 3 C -0.15 -4.41 9.20 71.98 0.66 -3.75 16 4 N -0.59 -23.31 2.41 -802.15 -1.93 -25.24 16 5 C 0.25 11.54 5.01 85.63 0.43 11.97 16 6 C -0.55 -27.95 9.39 25.60 0.24 -27.71 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.21 5.46 84.65 0.46 1.67 16 9 N -0.92 -50.88 13.29 21.45 0.28 -50.60 16 10 Si 0.95 42.37 29.54 68.60 2.03 44.40 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 C 0.53 19.38 7.04 87.66 0.62 19.99 16 15 O -0.57 -21.50 12.30 -3.05 -0.04 -21.54 16 16 C -0.15 -4.87 4.37 29.85 0.13 -4.74 16 17 C 0.12 3.16 4.98 86.38 0.43 3.59 16 18 N -0.62 -16.81 5.43 -457.34 -2.49 -19.29 16 19 C 0.57 13.73 7.82 85.06 0.66 14.40 16 20 O -0.45 -7.48 12.69 -75.52 -0.96 -8.44 16 21 C -0.25 -6.60 6.61 40.53 0.27 -6.33 16 22 N -0.41 -8.78 9.31 -187.99 -1.75 -10.53 16 23 C 0.02 0.42 11.17 85.13 0.95 1.37 16 24 C -0.06 -1.07 10.04 22.17 0.22 -0.85 16 25 C -0.25 -6.86 10.09 22.54 0.23 -6.63 16 26 C 0.34 11.09 6.73 23.79 0.16 11.25 16 27 O -0.60 -23.88 14.37 -6.75 -0.10 -23.98 16 28 H 0.07 2.30 6.14 -2.39 -0.01 2.29 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.79 7.81 -2.39 -0.02 2.77 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.85 6.35 -2.39 -0.02 1.83 16 35 H 0.02 1.01 7.93 -2.38 -0.02 1.00 16 36 H 0.03 1.50 6.32 -2.39 -0.02 1.49 16 37 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.10 3.31 7.34 -2.39 -0.02 3.29 16 40 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.10 2.55 8.05 -2.39 -0.02 2.53 16 42 H 0.44 14.22 4.87 -103.69 -0.50 13.72 16 43 H 0.46 4.19 8.10 -74.06 -0.60 3.59 16 44 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 46 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -67.77 382.83 1.23 -66.54 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.08 Total: 34.01 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.26 Total: 14.66 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.88 Total: -105.66 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -1.09 Total: -53.95 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -67.77 1.23 -66.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116173473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.093 kcal (2) G-P(sol) polarization free energy of solvation -67.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds