Wall clock time and date at job start Tue Mar 31 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35957 * 119.24916 * 2 1 4 4 C 1.38337 * 119.27441 * 179.97438 * 3 2 1 5 5 C 1.46562 * 120.97361 * 180.02562 * 4 3 2 6 6 C 1.35308 * 119.99770 * 174.40615 * 5 4 3 7 7 C 1.41630 * 120.00011 * 185.06561 * 6 5 4 8 8 O 1.21764 * 120.00267 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00117 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00171 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47372 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46984 * 300.00148 * 11 10 9 13 13 C 1.52994 * 109.46794 * 59.99815 * 11 10 9 14 14 C 1.50699 * 109.47215 * 180.02562 * 11 10 9 15 15 H 1.08007 * 120.00067 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00072 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99784 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00073 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47195 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47200 * 119.99444 * 18 16 14 21 21 H 1.48493 * 109.47201 * 239.99670 * 18 16 14 22 22 C 1.47339 * 118.04938 * 0.02562 * 4 3 2 23 23 O 1.21671 * 120.74161 * 180.02562 * 22 4 3 24 24 N 1.34973 * 118.51515 * 359.97438 * 22 4 3 25 25 C 1.46500 * 119.75910 * 180.02562 * 24 22 4 26 26 C 1.34219 * 119.24761 * 179.73071 * 2 1 3 27 27 O 1.21561 * 118.90818 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46996 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47223 * 239.99908 * 1 2 3 30 30 H 1.08993 * 109.47471 * 119.99672 * 1 2 3 31 31 H 1.08000 * 120.36256 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.00326 * 354.40447 * 5 4 3 33 33 H 1.07997 * 120.00120 * 5.06477 * 6 5 4 34 34 H 0.96996 * 120.00144 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47115 * 300.00481 * 10 9 7 36 36 H 1.09004 * 109.46965 * 59.99666 * 10 9 7 37 37 H 1.08996 * 109.47496 * 59.99425 * 12 11 10 38 38 H 1.08998 * 109.47054 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.46973 * 299.99982 * 12 11 10 40 40 H 1.09001 * 109.47369 * 60.00219 * 13 11 10 41 41 H 1.09001 * 109.47048 * 179.97438 * 13 11 10 42 42 H 1.08999 * 109.47580 * 299.99835 * 13 11 10 43 43 H 0.96994 * 119.99751 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.46959 * 0.02562 * 25 24 22 45 45 H 1.09004 * 109.46750 * 119.99522 * 25 24 22 46 46 H 1.09000 * 109.46953 * 239.99331 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1293 1.1862 0.0000 4 6 3.5127 1.1868 0.0005 5 6 4.2664 2.4438 0.0011 6 6 5.6144 2.4242 0.1159 7 6 6.3337 3.6395 0.2244 8 8 5.7390 4.7019 0.2141 9 7 7.6765 3.6200 0.3382 10 6 8.4205 4.8770 0.4500 11 6 9.9161 4.5759 0.5666 12 6 10.1688 3.7214 1.8103 13 6 10.3818 3.8164 -0.6772 14 6 10.6813 5.8690 0.6822 15 1 10.1538 6.8114 0.6729 16 6 12.0550 5.8491 0.7987 17 7 12.6974 4.7015 0.8095 18 14 13.0036 7.4519 0.9413 19 1 12.0548 8.5937 0.9035 20 1 13.7519 7.4719 2.2238 21 1 13.9582 7.5645 -0.1906 22 6 4.2061 -0.1132 0.0005 23 8 5.4215 -0.1698 0.0014 24 7 3.4629 -1.2399 0.0005 25 6 4.1241 -2.5472 0.0010 26 6 2.1208 -1.1711 0.0055 27 8 1.4794 -2.2037 0.0108 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3634 -0.5137 -0.8899 31 1 1.5830 2.1179 0.0004 32 1 3.7459 3.3856 -0.0901 33 1 6.1420 1.4819 0.1247 34 1 8.1503 2.7737 0.3461 35 1 8.2401 5.4860 -0.4358 36 1 8.0889 5.4179 1.3364 37 1 9.6152 2.7862 1.7273 38 1 11.2342 3.5073 1.8937 39 1 9.8368 4.2625 2.6965 40 1 10.2018 4.4252 -1.5633 41 1 11.4474 3.6023 -0.5943 42 1 9.8283 2.8811 -0.7603 43 1 13.6638 4.6876 0.8911 44 1 5.2051 -2.4075 0.0019 45 1 3.8293 -3.1030 0.8911 46 1 3.8298 -3.1035 -0.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141962311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:17 Heat of formation + Delta-G solvation = -45.841926 kcal Electronic energy + Delta-G solvation = -28507.862641 eV Core-core repulsion = 24399.421051 eV Total energy + Delta-G solvation = -4108.441589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.66288 -39.69924 -39.17220 -37.86055 -36.35822 -35.74054 -34.17549 -33.15820 -31.12104 -30.45772 -28.75362 -27.41629 -25.88246 -25.64515 -25.18509 -24.14283 -23.89534 -21.77937 -20.21884 -19.10505 -18.63268 -17.81396 -17.63643 -17.60844 -16.69171 -16.08755 -15.70807 -15.47045 -15.32621 -15.03266 -14.65339 -14.58426 -14.08910 -14.01403 -13.89768 -13.32908 -13.27706 -12.94251 -12.86835 -12.72378 -12.69928 -12.36740 -12.10385 -12.09364 -11.39000 -11.32421 -11.14036 -10.83313 -10.61708 -10.41533 -10.30416 -10.26837 -10.15250 -10.11370 -9.55627 -9.44418 -9.16422 -8.70922 -8.41939 -8.31039 -8.02122 -5.96700 -4.06530 0.16427 1.34277 1.39174 1.87387 2.43703 3.03910 3.30482 3.38849 3.43522 3.69147 3.88183 3.92532 4.14845 4.34596 4.45462 4.65232 4.66833 4.86452 4.94015 4.96609 4.96704 5.00917 5.29822 5.32904 5.46823 5.51883 5.72643 5.81206 6.24111 6.40958 6.41574 6.53109 6.62054 6.72947 6.87063 6.92548 7.03736 7.08010 7.10118 7.16289 7.43819 7.46257 7.63354 7.75291 8.08154 8.16947 8.26462 8.45197 8.83859 8.95009 9.58896 11.04724 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.002095 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.291331 B =13362.074668 C =14154.155220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.529 5.529 3 C 0.177 3.823 4 C -0.226 4.226 5 C -0.023 4.023 6 C -0.202 4.202 7 C 0.535 3.465 8 O -0.567 6.567 9 N -0.709 5.709 10 C 0.131 3.869 11 C 0.054 3.946 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.503 4.503 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.551 3.449 23 O -0.489 6.489 24 N -0.554 5.554 25 C 0.079 3.921 26 C 0.690 3.310 27 O -0.538 6.538 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.187 0.813 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.400 0.600 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.008 0.992 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.628 -13.204 -1.933 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.246 5.246 3 C 0.052 3.948 4 C -0.236 4.236 5 C -0.044 4.044 6 C -0.223 4.223 7 C 0.324 3.676 8 O -0.449 6.449 9 N -0.358 5.358 10 C 0.009 3.991 11 C 0.054 3.946 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.345 3.655 23 O -0.362 6.362 24 N -0.298 5.298 25 C -0.062 4.062 26 C 0.393 3.607 27 O -0.412 6.412 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.204 0.796 32 H 0.159 0.841 33 H 0.175 0.825 34 H 0.235 0.765 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.573 -13.274 -1.922 27.995 hybrid contribution 0.791 0.476 0.082 0.927 sum -23.782 -12.798 -1.840 27.070 Atomic orbital electron populations 1.22149 0.74205 1.04737 1.04903 1.44378 1.09819 1.04317 1.66114 1.22981 0.92439 0.89751 0.89600 1.20554 0.91500 0.93399 1.18121 1.21490 0.93886 0.93564 0.95506 1.23024 0.95912 1.00461 1.02923 1.17181 0.82986 0.89504 0.77915 1.90762 1.69103 1.32973 1.52105 1.46284 1.06293 1.11469 1.71803 1.21699 0.93426 0.83762 1.00263 1.18366 0.87831 0.95577 0.92844 1.21830 1.03480 0.95885 0.97706 1.21829 1.03673 0.96001 0.97407 1.21033 0.91462 0.91714 1.49972 0.92406 1.24893 0.97626 0.96171 0.94957 1.69822 1.08005 1.24081 1.50547 0.86522 0.79904 0.83967 0.77517 1.19781 1.21111 1.21115 1.18722 0.87446 0.83584 0.75754 1.90704 1.12539 1.85565 1.47404 1.46304 1.05712 1.10821 1.66915 1.21962 0.99718 0.80661 1.03891 1.15695 0.81865 0.84001 0.79102 1.91021 1.65033 1.31298 1.53810 0.88391 0.89799 0.89788 0.79575 0.84063 0.82465 0.76478 0.92728 0.92744 0.97357 0.89630 0.95486 0.95479 0.89632 0.97342 0.93117 0.87658 0.90221 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 9.94 59.85 0.59 0.79 16 2 N -0.53 -3.16 2.98 -128.43 -0.38 -3.54 16 3 C 0.18 0.95 10.20 -15.69 -0.16 0.79 16 4 C -0.23 -2.13 6.03 -102.80 -0.62 -2.75 16 5 C -0.02 -0.27 9.42 -37.27 -0.35 -0.62 16 6 C -0.20 -3.05 9.11 -39.33 -0.36 -3.40 16 7 C 0.53 9.96 7.56 -14.96 -0.11 9.84 16 8 O -0.57 -12.07 16.11 5.13 0.08 -11.99 16 9 N -0.71 -13.70 4.95 -63.22 -0.31 -14.01 16 10 C 0.13 2.92 4.50 -4.04 -0.02 2.90 16 11 C 0.05 1.31 0.50 -155.66 -0.08 1.23 16 12 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 13 C -0.13 -3.09 8.08 37.15 0.30 -2.79 16 14 C -0.50 -13.47 8.01 -34.44 -0.28 -13.75 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -24.11 9.35 55.43 0.52 -23.59 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.55 6.26 7.60 -12.47 -0.09 6.17 16 23 O -0.49 -6.84 12.97 5.21 0.07 -6.77 16 24 N -0.55 -5.43 2.96 -129.59 -0.38 -5.81 16 25 C 0.08 0.63 9.96 59.85 0.60 1.22 16 26 C 0.69 6.35 8.09 -87.77 -0.71 5.64 16 27 O -0.54 -6.01 16.08 5.31 0.09 -5.92 16 28 H 0.10 -0.09 7.72 -51.93 -0.40 -0.49 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.19 0.22 7.84 -52.49 -0.41 -0.20 16 32 H 0.14 1.52 7.46 -52.49 -0.39 1.13 16 33 H 0.16 2.41 4.81 -52.50 -0.25 2.16 16 34 H 0.40 7.22 6.12 -40.82 -0.25 6.97 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 42 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.10 0.86 6.91 -51.93 -0.36 0.50 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.38 376.40 -7.09 -41.46 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.33 Total: 4.34 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.08 Total: 4.12 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.56 Total: -46.95 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.24 Total: -24.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.38 -7.09 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.379 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds