Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35953 * 119.24674 * 2 1 4 4 C 1.38343 * 119.28001 * 180.02562 * 3 2 1 5 5 C 1.46563 * 120.97976 * 180.02562 * 4 3 2 6 6 C 1.35302 * 120.00299 * 114.22745 * 5 4 3 7 7 C 1.41625 * 119.99867 * 353.32550 * 6 5 4 8 8 O 1.21766 * 120.00158 * 354.84707 * 7 6 5 9 9 N 1.34777 * 120.00244 * 174.84555 * 7 6 5 10 10 C 1.46497 * 120.00146 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47255 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47172 * 300.00567 * 11 10 9 13 13 C 1.53002 * 109.46537 * 59.99886 * 11 10 9 14 14 C 1.50694 * 109.47259 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00286 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99705 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00100 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99568 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47042 * 120.00023 * 18 16 14 21 21 H 1.48501 * 109.46611 * 239.99451 * 18 16 14 22 22 C 1.47341 * 118.04434 * 0.27154 * 4 3 2 23 23 O 1.21667 * 120.74238 * 179.72579 * 22 4 3 24 24 N 1.34970 * 118.51370 * 359.44000 * 22 4 3 25 25 C 1.46498 * 119.76328 * 180.24207 * 24 22 4 26 26 C 1.34221 * 119.25524 * 180.02562 * 2 1 3 27 27 O 1.21564 * 118.90232 * 0.02562 * 26 2 1 28 28 H 1.08991 * 109.47390 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46984 * 120.00610 * 1 2 3 30 30 H 1.08997 * 109.46805 * 239.99569 * 1 2 3 31 31 H 1.08002 * 120.36486 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99361 * 294.22169 * 5 4 3 33 33 H 1.07992 * 120.00312 * 173.59905 * 6 5 4 34 34 H 0.97002 * 119.99761 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47169 * 299.99897 * 10 9 7 36 36 H 1.09002 * 109.47442 * 60.00585 * 10 9 7 37 37 H 1.09000 * 109.47232 * 59.98960 * 12 11 10 38 38 H 1.08998 * 109.47173 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46651 * 299.99600 * 12 11 10 40 40 H 1.08994 * 109.47289 * 60.00356 * 13 11 10 41 41 H 1.09004 * 109.46678 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.47435 * 299.99890 * 13 11 10 43 43 H 0.96993 * 119.99925 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47466 * 270.32970 * 25 24 22 45 45 H 1.09000 * 109.47146 * 30.32531 * 25 24 22 46 46 H 1.09000 * 109.47422 * 150.32424 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1292 1.1862 0.0000 4 6 3.5127 1.1870 -0.0005 5 6 4.2663 2.4440 0.0000 6 6 5.0271 2.7763 1.0684 7 6 4.9858 1.9833 2.2411 8 8 4.1980 1.0585 2.3234 9 7 5.8185 2.2522 3.2662 10 6 5.7755 1.4323 4.4794 11 6 6.8146 1.9449 5.4787 12 6 8.2087 1.8589 4.8541 13 6 6.5046 3.4002 5.8352 14 6 6.7699 1.1019 6.7269 15 1 6.0706 0.2821 6.8002 16 6 7.6218 1.3772 7.7756 17 7 8.4737 2.3751 7.6862 18 14 7.5668 0.3317 9.3227 19 1 6.5292 -0.7200 9.1728 20 1 8.8909 -0.3056 9.5368 21 1 7.2362 1.1900 10.4885 22 6 4.2061 -0.1130 -0.0073 23 8 5.4215 -0.1695 -0.0130 24 7 3.4630 -1.2397 -0.0010 25 6 4.1242 -2.5469 -0.0020 26 6 2.1209 -1.1710 -0.0005 27 8 1.4796 -2.2037 -0.0015 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 -0.3633 -0.5139 0.8899 31 1 1.5829 2.1179 -0.0004 32 1 4.2145 3.1050 -0.8526 33 1 5.6624 3.6487 1.0287 34 1 6.4464 2.9887 3.2006 35 1 4.7823 1.4934 4.9241 36 1 5.9968 0.3956 4.2255 37 1 8.2407 2.4688 3.9513 38 1 8.9490 2.2236 5.5660 39 1 8.4295 0.8221 4.6000 40 1 5.5115 3.4616 6.2802 41 1 7.2451 3.7656 6.5467 42 1 6.5366 4.0102 4.9325 43 1 9.0732 2.5684 8.4238 44 1 4.2879 -2.8706 -1.0299 45 1 5.0826 -2.4698 0.5115 46 1 3.4943 -3.2732 0.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141962316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = -42.306374 kcal Electronic energy + Delta-G solvation = -29778.428312 eV Core-core repulsion = 25670.140036 eV Total energy + Delta-G solvation = -4108.288276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18557 -39.64294 -38.78574 -37.40972 -36.40619 -35.19295 -34.01302 -33.21317 -31.11110 -30.31215 -28.32809 -27.00359 -25.86381 -25.69787 -25.17686 -23.89402 -23.50877 -21.92755 -19.62598 -19.16600 -18.69263 -17.83477 -17.29060 -17.11213 -16.38679 -15.72985 -15.63517 -15.23759 -14.96573 -14.91206 -14.60416 -14.58350 -14.14939 -13.77867 -13.45356 -13.24478 -12.94748 -12.91425 -12.86312 -12.72687 -12.50137 -12.17137 -12.13343 -11.49283 -11.36427 -11.18080 -10.95960 -10.86255 -10.64842 -10.37008 -10.25775 -10.18570 -9.80714 -9.71958 -9.60597 -9.46487 -9.25640 -8.76064 -8.41487 -8.24499 -8.03542 -6.00615 -4.10363 0.86330 1.32621 1.85488 2.01531 3.00063 3.27978 3.36464 3.41356 3.45579 3.77539 3.99652 4.17661 4.34148 4.42433 4.70310 4.95935 4.96799 5.17101 5.17279 5.26166 5.26715 5.30031 5.40633 5.49984 5.55025 5.69192 5.93565 6.04799 6.16132 6.30068 6.36735 6.41108 6.55596 6.81797 6.85835 6.98079 7.05292 7.09339 7.18955 7.38871 7.50979 7.58390 7.71339 7.93977 8.03550 8.11214 8.20325 8.41062 8.77300 8.90841 9.55314 11.00857 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.002942 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.280011 B = 9516.032246 C =10088.223419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.529 5.529 3 C 0.148 3.852 4 C -0.191 4.191 5 C -0.012 4.012 6 C -0.180 4.180 7 C 0.535 3.465 8 O -0.552 6.552 9 N -0.710 5.710 10 C 0.134 3.866 11 C 0.055 3.945 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.504 4.504 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.573 3.427 23 O -0.502 6.502 24 N -0.552 5.552 25 C 0.083 3.917 26 C 0.696 3.304 27 O -0.552 6.552 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.175 0.825 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.398 0.602 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.007 0.993 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 2.273 -18.903 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.248 5.248 3 C 0.025 3.975 4 C -0.201 4.201 5 C -0.033 4.033 6 C -0.201 4.201 7 C 0.325 3.675 8 O -0.434 6.434 9 N -0.359 5.359 10 C 0.011 3.989 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.543 4.543 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C 0.367 3.633 23 O -0.375 6.375 24 N -0.295 5.295 25 C -0.058 4.058 26 C 0.399 3.601 27 O -0.426 6.426 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.192 0.808 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.233 0.767 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.152 0.966 -18.674 22.861 hybrid contribution 0.419 -0.041 1.034 1.116 sum -12.733 0.925 -17.641 21.776 Atomic orbital electron populations 1.22015 0.74931 1.04106 1.04433 1.44078 1.09227 1.04274 1.67222 1.22444 0.92042 0.89340 0.93641 1.20295 0.91654 0.93382 1.14777 1.21536 0.93177 0.91815 0.96750 1.22355 1.01419 1.01788 0.94551 1.17138 0.81563 0.84674 0.84167 1.90740 1.39473 1.31378 1.81824 1.46273 1.37848 1.34656 1.17134 1.21656 1.00294 0.93588 0.83328 1.18358 0.90367 0.93614 0.92179 1.21823 1.01057 0.98255 0.97676 1.21821 1.00896 0.97121 0.98914 1.21030 1.19684 1.14525 0.99064 0.92493 1.24881 0.95132 0.95163 0.98360 1.69811 1.22063 1.28794 1.31802 0.86527 0.77894 0.80429 0.83113 1.19796 1.21037 1.21062 1.18302 0.87178 0.83186 0.74661 1.90822 1.12682 1.86500 1.47534 1.46108 1.05731 1.10539 1.67113 1.21866 0.99104 0.81487 1.03363 1.15615 0.81895 0.83914 0.78657 1.90973 1.65194 1.31479 1.54997 0.88930 0.90270 0.90161 0.80756 0.84281 0.84932 0.76732 0.92918 0.92937 0.97446 0.89629 0.95486 0.95532 0.89614 0.97487 0.93085 0.91151 0.88879 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 9.94 59.85 0.59 1.15 16 2 N -0.53 -5.57 2.98 -128.42 -0.38 -5.95 16 3 C 0.15 1.39 10.20 -15.69 -0.16 1.23 16 4 C -0.19 -2.43 3.70 -102.80 -0.38 -2.81 16 5 C -0.01 -0.13 9.48 -37.27 -0.35 -0.48 16 6 C -0.18 -2.31 9.73 -39.34 -0.38 -2.69 16 7 C 0.54 9.41 7.17 -14.97 -0.11 9.31 16 8 O -0.55 -11.18 12.80 3.63 0.05 -11.14 16 9 N -0.71 -13.06 4.95 -63.22 -0.31 -13.38 16 10 C 0.13 2.95 4.50 -4.04 -0.02 2.93 16 11 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 12 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 13 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 14 C -0.50 -13.49 8.01 -34.44 -0.28 -13.76 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.89 9.35 55.43 0.52 -23.38 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.57 9.25 5.88 -12.47 -0.07 9.18 16 23 O -0.50 -9.53 15.99 3.71 0.06 -9.47 16 24 N -0.55 -8.28 2.96 -129.59 -0.38 -8.66 16 25 C 0.08 1.07 10.11 59.85 0.60 1.68 16 26 C 0.70 9.79 8.09 -87.77 -0.71 9.08 16 27 O -0.55 -8.62 15.63 5.31 0.08 -8.53 16 28 H 0.09 0.25 7.72 -51.93 -0.40 -0.15 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.18 0.83 7.84 -52.49 -0.41 0.42 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.40 6.60 6.12 -40.82 -0.25 6.35 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 38 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 39 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.28 7.45 -51.93 -0.39 0.89 16 46 H 0.09 1.12 7.35 -51.93 -0.38 0.74 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -35.18 375.63 -7.08 -42.26 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.52 Total: 4.26 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -0.83 Total: 12.32 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.56 Total: -51.37 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: 0.19 Total: -29.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.18 -7.08 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.045 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds