Wall clock time and date at job start Tue Mar 31 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35953 * 119.24674 * 2 1 4 4 C 1.38343 * 119.28001 * 180.02562 * 3 2 1 5 5 C 1.46563 * 120.97976 * 180.02562 * 4 3 2 6 6 C 1.35302 * 120.00299 * 114.22745 * 5 4 3 7 7 C 1.41625 * 119.99867 * 353.32550 * 6 5 4 8 8 O 1.21766 * 120.00158 * 354.84707 * 7 6 5 9 9 N 1.34777 * 120.00244 * 174.84555 * 7 6 5 10 10 C 1.46497 * 120.00146 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47255 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47172 * 300.00567 * 11 10 9 13 13 C 1.53002 * 109.46537 * 59.99886 * 11 10 9 14 14 C 1.50694 * 109.47259 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00286 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99705 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00100 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99568 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47042 * 120.00023 * 18 16 14 21 21 H 1.48501 * 109.46611 * 239.99451 * 18 16 14 22 22 C 1.47341 * 118.04434 * 0.27154 * 4 3 2 23 23 O 1.21667 * 120.74238 * 179.72579 * 22 4 3 24 24 N 1.34970 * 118.51370 * 359.44000 * 22 4 3 25 25 C 1.46498 * 119.76328 * 180.24207 * 24 22 4 26 26 C 1.34221 * 119.25524 * 180.02562 * 2 1 3 27 27 O 1.21564 * 118.90232 * 0.02562 * 26 2 1 28 28 H 1.08991 * 109.47390 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46984 * 120.00610 * 1 2 3 30 30 H 1.08997 * 109.46805 * 239.99569 * 1 2 3 31 31 H 1.08002 * 120.36486 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99361 * 294.22169 * 5 4 3 33 33 H 1.07992 * 120.00312 * 173.59905 * 6 5 4 34 34 H 0.97002 * 119.99761 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47169 * 299.99897 * 10 9 7 36 36 H 1.09002 * 109.47442 * 60.00585 * 10 9 7 37 37 H 1.09000 * 109.47232 * 59.98960 * 12 11 10 38 38 H 1.08998 * 109.47173 * 180.02562 * 12 11 10 39 39 H 1.09007 * 109.46651 * 299.99600 * 12 11 10 40 40 H 1.08994 * 109.47289 * 60.00356 * 13 11 10 41 41 H 1.09004 * 109.46678 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.47435 * 299.99890 * 13 11 10 43 43 H 0.96993 * 119.99925 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47466 * 270.32970 * 25 24 22 45 45 H 1.09000 * 109.47146 * 30.32531 * 25 24 22 46 46 H 1.09000 * 109.47422 * 150.32424 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1292 1.1862 0.0000 4 6 3.5127 1.1870 -0.0005 5 6 4.2663 2.4440 0.0000 6 6 5.0271 2.7763 1.0684 7 6 4.9858 1.9833 2.2411 8 8 4.1980 1.0585 2.3234 9 7 5.8185 2.2522 3.2662 10 6 5.7755 1.4323 4.4794 11 6 6.8146 1.9449 5.4787 12 6 8.2087 1.8589 4.8541 13 6 6.5046 3.4002 5.8352 14 6 6.7699 1.1019 6.7269 15 1 6.0706 0.2821 6.8002 16 6 7.6218 1.3772 7.7756 17 7 8.4737 2.3751 7.6862 18 14 7.5668 0.3317 9.3227 19 1 6.5292 -0.7200 9.1728 20 1 8.8909 -0.3056 9.5368 21 1 7.2362 1.1900 10.4885 22 6 4.2061 -0.1130 -0.0073 23 8 5.4215 -0.1695 -0.0130 24 7 3.4630 -1.2397 -0.0010 25 6 4.1242 -2.5469 -0.0020 26 6 2.1209 -1.1710 -0.0005 27 8 1.4796 -2.2037 -0.0015 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 -0.3633 -0.5139 0.8899 31 1 1.5829 2.1179 -0.0004 32 1 4.2145 3.1050 -0.8526 33 1 5.6624 3.6487 1.0287 34 1 6.4464 2.9887 3.2006 35 1 4.7823 1.4934 4.9241 36 1 5.9968 0.3956 4.2255 37 1 8.2407 2.4688 3.9513 38 1 8.9490 2.2236 5.5660 39 1 8.4295 0.8221 4.6000 40 1 5.5115 3.4616 6.2802 41 1 7.2451 3.7656 6.5467 42 1 6.5366 4.0102 4.9325 43 1 9.0732 2.5684 8.4238 44 1 4.2879 -2.8706 -1.0299 45 1 5.0826 -2.4698 0.5115 46 1 3.4943 -3.2732 0.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141962316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:18 Heat of formation + Delta-G solvation = -66.376183 kcal Electronic energy + Delta-G solvation = -29779.472058 eV Core-core repulsion = 25670.140036 eV Total energy + Delta-G solvation = -4109.332021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.20549 -40.93253 -39.97018 -38.47374 -38.05745 -36.34783 -35.13373 -34.77255 -32.82878 -31.35788 -29.32094 -27.87649 -27.58339 -27.49971 -26.98075 -25.02063 -24.56853 -23.10266 -20.85911 -20.54670 -20.13155 -18.93371 -18.36606 -18.17734 -17.84482 -17.33964 -16.77805 -16.60761 -16.31827 -16.16809 -15.86783 -15.80069 -15.34087 -14.87742 -14.76048 -14.60174 -14.41269 -14.25117 -13.95130 -13.91077 -13.67963 -13.35673 -13.21647 -13.14548 -13.01321 -12.70778 -12.59667 -12.28494 -12.26107 -12.16282 -12.04808 -11.50826 -11.44378 -11.26726 -10.93364 -10.86750 -10.70800 -10.48394 -10.41597 -9.80100 -8.97624 -8.04767 -6.20637 -0.01379 0.36090 0.89922 0.98402 1.38529 1.42255 1.52032 2.03028 2.40056 2.41742 2.57396 2.69152 3.18315 3.35392 3.67782 4.08142 4.15570 4.21738 4.27713 4.29493 4.37043 4.45315 4.48919 4.49131 4.55086 4.63698 4.69952 4.74333 4.82484 4.96719 5.04244 5.09093 5.14034 5.17778 5.21931 5.36002 5.37461 5.54769 5.64216 5.65431 5.66743 6.12773 6.17665 6.20112 6.41665 6.44260 6.80855 6.83455 6.85097 7.45302 7.46983 8.94411 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.002942 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.280011 B = 9516.032246 C =10088.223419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.524 5.524 3 C 0.185 3.815 4 C -0.241 4.241 5 C 0.028 3.972 6 C -0.215 4.215 7 C 0.531 3.469 8 O -0.588 6.588 9 N -0.712 5.712 10 C 0.155 3.845 11 C 0.052 3.948 12 C -0.119 4.119 13 C -0.117 4.117 14 C -0.530 4.530 15 H 0.039 0.961 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.277 1.277 22 C 0.558 3.442 23 O -0.550 6.550 24 N -0.562 5.562 25 C 0.080 3.920 26 C 0.684 3.316 27 O -0.575 6.575 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.236 0.764 32 H 0.193 0.807 33 H 0.166 0.834 34 H 0.407 0.593 35 H 0.036 0.964 36 H 0.021 0.979 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 4.754 -20.688 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.241 5.241 3 C 0.062 3.938 4 C -0.250 4.250 5 C 0.007 3.993 6 C -0.235 4.235 7 C 0.323 3.677 8 O -0.472 6.472 9 N -0.362 5.362 10 C 0.031 3.969 11 C 0.051 3.949 12 C -0.177 4.177 13 C -0.175 4.175 14 C -0.569 4.569 15 H 0.058 0.942 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.203 1.203 22 C 0.355 3.645 23 O -0.427 6.427 24 N -0.305 5.305 25 C -0.061 4.061 26 C 0.388 3.612 27 O -0.452 6.452 28 H 0.160 0.840 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.253 0.747 32 H 0.210 0.790 33 H 0.183 0.817 34 H 0.244 0.756 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.102 3.473 -20.477 25.680 hybrid contribution 0.848 -0.921 1.499 1.953 sum -14.254 2.552 -18.978 23.872 Atomic orbital electron populations 1.22420 0.72171 1.07346 1.04302 1.44439 1.10879 1.03606 1.65207 1.23307 0.91274 0.90555 0.88668 1.20534 0.93286 0.92552 1.18631 1.22137 0.89662 0.90594 0.96892 1.22380 1.04649 1.03149 0.93327 1.17964 0.80310 0.84465 0.84966 1.90720 1.40818 1.33008 1.82637 1.46120 1.38992 1.34712 1.16405 1.21092 0.98672 0.92553 0.84578 1.18348 0.90990 0.93964 0.91593 1.21666 1.00116 0.97655 0.98296 1.21635 0.99566 0.96597 0.99731 1.21292 1.19797 1.14865 1.00924 0.94228 1.25452 0.94919 0.96170 1.00570 1.69905 1.22104 1.29295 1.32371 0.85708 0.77663 0.79067 0.80383 1.20292 1.20669 1.20277 1.19024 0.87034 0.84502 0.73934 1.90779 1.14461 1.87186 1.50290 1.46333 1.06494 1.10940 1.66700 1.21897 0.98282 0.81460 1.04462 1.15925 0.81519 0.85011 0.78788 1.90948 1.65450 1.32647 1.56203 0.84020 0.89558 0.91255 0.74749 0.78967 0.81675 0.75604 0.94562 0.96058 0.94474 0.91681 0.97086 0.96218 0.91864 0.94194 0.92937 0.89146 0.90511 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 9.94 127.77 1.27 1.97 16 2 N -0.52 -9.54 2.98 -678.81 -2.02 -11.56 16 3 C 0.19 2.68 10.20 84.08 0.86 3.54 16 4 C -0.24 -5.48 3.70 -18.68 -0.07 -5.55 16 5 C 0.03 0.48 9.48 23.76 0.23 0.71 16 6 C -0.21 -4.89 9.73 22.43 0.22 -4.67 16 7 C 0.53 18.28 7.17 85.08 0.61 18.89 16 8 O -0.59 -23.97 12.80 -3.12 -0.04 -24.01 16 9 N -0.71 -25.97 4.95 -472.12 -2.34 -28.31 16 10 C 0.16 7.06 4.50 86.38 0.39 7.45 16 11 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 12 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 13 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 14 C -0.53 -29.20 8.01 25.60 0.21 -28.99 16 15 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 16 C 0.03 1.55 5.15 84.66 0.44 1.99 16 17 N -0.90 -48.82 9.35 21.45 0.20 -48.62 16 18 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.56 18.09 5.88 86.61 0.51 18.60 16 23 O -0.55 -21.61 15.99 -2.80 -0.04 -21.65 16 24 N -0.56 -17.21 2.96 -800.52 -2.37 -19.58 16 25 C 0.08 2.21 10.11 127.77 1.29 3.50 16 26 C 0.68 18.86 8.09 179.35 1.45 20.31 16 27 O -0.58 -18.00 15.63 -3.92 -0.06 -18.06 16 28 H 0.14 -0.09 7.72 -2.39 -0.02 -0.11 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.24 0.47 7.84 -2.91 -0.02 0.44 16 32 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.41 12.92 6.12 -92.71 -0.57 12.35 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 38 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 39 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 42 H 0.04 1.49 6.86 -2.39 -0.02 1.47 16 43 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.33 7.45 -2.39 -0.02 2.31 16 46 H 0.09 2.42 7.35 -2.39 -0.02 2.41 16 Total: -1.00 -82.82 375.63 4.32 -78.49 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.44 Total: 17.11 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 8.53 Total: 30.43 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -6.52 Total: -108.06 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -0.15 Total: -63.72 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -82.82 4.32 -78.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.117 kcal (2) G-P(sol) polarization free energy of solvation -82.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds