Wall clock time and date at job start Tue Mar 31 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 C 1.52990 * 109.47304 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47580 * 180.02562 * 4 3 2 6 6 C 1.36781 * 120.00019 * 270.00293 * 5 4 3 7 7 H 1.08002 * 120.00049 * 43.46301 * 6 5 4 8 8 C 1.39071 * 119.99930 * 223.46553 * 6 5 4 9 9 N 1.31362 * 120.00105 * 14.70666 * 8 6 5 10 10 Si 1.86801 * 119.99950 * 194.70646 * 8 6 5 11 11 H 1.48494 * 109.47126 * 89.99941 * 10 8 6 12 12 H 1.48504 * 109.47116 * 210.00120 * 10 8 6 13 13 H 1.48505 * 109.47273 * 329.99838 * 10 8 6 14 14 C 1.34783 * 120.00608 * 89.99665 * 5 4 3 15 15 O 1.21787 * 120.00359 * 175.31373 * 14 5 4 16 16 C 1.41644 * 119.99306 * 355.31346 * 14 5 4 17 17 C 1.35271 * 119.99600 * 179.53649 * 16 14 5 18 18 C 1.46742 * 119.99851 * 174.48235 * 17 16 14 19 19 C 1.40159 * 120.95137 * 344.59343 * 18 17 16 20 20 N 1.32057 * 119.00650 * 179.97438 * 19 18 17 21 21 C 1.32516 * 121.11263 * 0.02562 * 20 19 18 22 22 O 1.35335 * 118.94083 * 180.02562 * 21 20 19 23 23 C 1.42895 * 116.99631 * 359.97438 * 22 21 20 24 24 N 1.32347 * 122.12646 * 359.70919 * 21 20 19 25 25 C 1.32587 * 120.85039 * 0.58010 * 24 21 20 26 26 O 1.35316 * 120.59667 * 179.71291 * 25 24 21 27 27 C 1.42898 * 116.99683 * 359.72399 * 26 25 24 28 28 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47180 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.46843 * 60.00001 * 1 2 3 31 31 H 1.08998 * 109.47225 * 239.99412 * 2 1 3 32 32 H 1.09001 * 109.46843 * 119.99999 * 2 1 3 33 33 H 1.09002 * 109.47141 * 59.99888 * 3 2 1 34 34 H 1.09005 * 109.46806 * 300.00001 * 3 2 1 35 35 H 1.08998 * 109.47114 * 59.99398 * 4 3 2 36 36 H 1.09005 * 109.47234 * 299.99793 * 4 3 2 37 37 H 0.97001 * 120.00032 * 184.55264 * 9 8 6 38 38 H 1.07999 * 120.00524 * 359.54319 * 16 14 5 39 39 H 1.07999 * 120.00257 * 354.47723 * 17 16 14 40 40 H 1.08003 * 120.49888 * 359.96028 * 19 18 17 41 41 H 1.08998 * 109.47408 * 300.00006 * 23 22 21 42 42 H 1.08996 * 109.47292 * 60.00602 * 23 22 21 43 43 H 1.09000 * 109.47224 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46638 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47155 * 299.99814 * 27 26 25 46 46 H 1.08997 * 109.47399 * 60.00247 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8236 0.0013 6 6 4.2868 3.4688 -1.1830 7 1 3.5745 3.3838 -1.9904 8 6 5.4363 4.2341 -1.3474 9 7 6.4323 4.1138 -0.4995 10 14 5.5638 5.4332 -2.7741 11 1 5.0408 6.7583 -2.3552 12 1 6.9854 5.5683 -3.1816 13 1 4.7666 4.9260 -3.9198 14 6 4.2825 3.4588 1.1687 15 8 4.7687 4.5754 1.1710 16 6 3.9525 2.8275 2.3930 17 6 4.1861 3.4610 3.5651 18 6 3.7348 2.8612 4.8260 19 6 2.7972 1.8194 4.8338 20 7 2.4184 1.3075 5.9906 21 6 2.9089 1.7628 7.1344 22 8 2.4903 1.2055 8.2945 23 6 1.5329 0.1491 8.1983 24 7 3.7995 2.7407 7.1786 25 6 4.2321 3.3172 6.0657 26 8 5.1385 4.3206 6.1172 27 6 5.5902 4.7208 7.4125 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 7.2062 4.6938 -0.5749 38 1 3.5145 1.8403 2.3908 39 1 4.7048 4.4083 3.5729 40 1 2.3905 1.4411 3.9075 41 1 0.6318 0.5187 7.7090 42 1 1.9532 -0.6701 7.6149 43 1 1.2831 -0.2070 9.1977 44 1 6.3118 5.5315 7.3111 45 1 4.7409 5.0628 8.0039 46 1 6.0623 3.8739 7.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142450226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:45 Heat of formation + Delta-G solvation = -23.790220 kcal Electronic energy + Delta-G solvation = -29022.727530 eV Core-core repulsion = 24915.242175 eV Total energy + Delta-G solvation = -4107.485355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37006 -39.25212 -38.61916 -37.76546 -35.51740 -34.29020 -33.42448 -32.98933 -31.77306 -29.67489 -28.18657 -27.74023 -27.44129 -25.45009 -24.26875 -23.55115 -22.88432 -21.16686 -20.64312 -19.36611 -18.84782 -18.05345 -17.18991 -16.74913 -16.45571 -15.79795 -15.70512 -15.38479 -15.11165 -14.86672 -14.29040 -14.14792 -13.89416 -13.88008 -13.78767 -13.72360 -12.89061 -12.70230 -12.53051 -12.23321 -12.11653 -12.08905 -11.87169 -11.54738 -11.46609 -11.36371 -11.09214 -10.93418 -10.86184 -10.79939 -10.57604 -10.57039 -10.20206 -10.17034 -10.08141 -9.78100 -9.38974 -8.78042 -8.00821 -7.75906 -7.05537 -6.04703 -3.84053 0.61474 1.07503 2.28696 2.43316 2.94784 3.33569 3.38902 3.41398 3.76689 3.95611 4.31206 4.51988 4.65886 4.90632 4.96127 4.98051 5.07036 5.07612 5.17137 5.20028 5.22771 5.25283 5.31852 5.37632 5.44367 5.50788 5.53873 5.64750 5.75011 5.92288 6.01383 6.09381 6.11509 6.14874 6.32127 6.42788 6.52613 6.57867 6.69237 6.81253 6.85336 6.96687 7.02093 7.21564 7.60786 7.96123 8.28851 9.06924 9.22465 9.67161 10.37229 10.97912 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.003533 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.650700 B = 7923.037894 C =10329.415543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.106 3.894 5 N -0.444 5.444 6 C -0.335 4.335 7 H 0.080 0.920 8 C 0.062 3.938 9 N -0.811 5.811 10 Si 0.909 3.091 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.482 3.518 15 O -0.531 6.531 16 C -0.158 4.158 17 C -0.067 4.067 18 C -0.189 4.189 19 C 0.207 3.793 20 N -0.581 5.581 21 C 0.521 3.479 22 O -0.292 6.292 23 C 0.046 3.954 24 N -0.579 5.579 25 C 0.403 3.597 26 O -0.282 6.282 27 C 0.035 3.965 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.182 0.818 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -8.323 13.270 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.175 4.175 4 C -0.019 4.019 5 N -0.164 5.164 6 C -0.462 4.462 7 H 0.097 0.903 8 C -0.149 4.149 9 N -0.445 5.445 10 Si 0.736 3.264 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.274 3.726 15 O -0.411 6.411 16 C -0.179 4.179 17 C -0.089 4.089 18 C -0.195 4.195 19 C 0.044 3.956 20 N -0.314 5.314 21 C 0.219 3.781 22 O -0.194 6.194 23 C -0.049 4.049 24 N -0.321 5.321 25 C 0.215 3.785 26 O -0.184 6.184 27 C -0.060 4.060 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.199 0.801 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.013 -7.941 14.221 18.152 hybrid contribution 0.288 0.680 -1.156 1.372 sum -7.725 -7.261 13.065 16.825 Atomic orbital electron populations 1.21764 0.96364 1.00907 1.01740 1.21490 0.95384 0.97458 1.01720 1.22090 0.97242 0.95678 1.02457 1.21545 0.92580 0.86541 1.01198 1.43265 1.58752 1.08956 1.05475 1.19073 1.04173 1.30820 0.92150 0.90273 1.25275 0.93967 0.98484 0.97190 1.69886 1.05284 1.34256 1.35055 0.86246 0.77109 0.81677 0.81352 1.20403 1.21279 1.19821 1.16634 0.85431 0.87049 0.83502 1.90672 1.43684 1.20121 1.86645 1.22491 1.01518 0.99410 0.94487 1.21634 0.98613 1.00465 0.88208 1.19874 1.04131 1.02374 0.93152 1.23164 0.89102 0.88047 0.95249 1.67995 1.31612 1.33415 0.98383 1.20136 0.86631 0.86501 0.84808 1.86010 1.58379 1.50178 1.24810 1.22978 0.90720 0.87855 1.03382 1.66872 1.18727 1.14858 1.31652 1.19887 0.85643 0.85240 0.87705 1.86336 1.53154 1.46357 1.32574 1.23015 1.00017 1.00699 0.82265 0.93300 0.92921 0.92895 0.92119 0.92316 0.92334 0.91627 0.91316 0.92701 0.92534 0.87303 0.84361 0.80123 0.91773 0.91757 0.88072 0.87943 0.91908 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.14 -2.09 5.47 -26.74 -0.15 -2.24 16 4 C 0.11 1.98 4.96 -4.05 -0.02 1.96 16 5 N -0.44 -10.86 2.51 -118.05 -0.30 -11.16 16 6 C -0.33 -9.04 9.26 -15.04 -0.14 -9.18 16 7 H 0.08 2.04 7.88 -52.49 -0.41 1.63 16 8 C 0.06 1.74 4.51 -17.44 -0.08 1.67 16 9 N -0.81 -24.09 11.21 55.50 0.62 -23.47 16 10 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 C 0.48 12.19 6.81 -14.96 -0.10 12.09 16 15 O -0.53 -15.78 13.37 5.11 0.07 -15.71 16 16 C -0.16 -3.11 8.16 -39.34 -0.32 -3.43 16 17 C -0.07 -1.25 9.15 -37.20 -0.34 -1.59 16 18 C -0.19 -3.02 5.88 -104.64 -0.62 -3.64 16 19 C 0.21 2.86 10.60 -16.73 -0.18 2.68 16 20 N -0.58 -8.04 9.17 -14.36 -0.13 -8.17 16 21 C 0.52 7.61 8.48 -91.06 -0.77 6.84 16 22 O -0.29 -3.72 10.55 -17.70 -0.19 -3.91 16 23 C 0.05 0.39 10.35 101.05 1.05 1.43 16 24 N -0.58 -8.94 9.39 -14.39 -0.14 -9.08 16 25 C 0.40 6.40 7.55 -16.13 -0.12 6.28 16 26 O -0.28 -4.29 9.86 -17.64 -0.17 -4.46 16 27 C 0.03 0.38 10.41 101.05 1.05 1.44 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 36 H 0.05 0.93 6.30 -51.93 -0.33 0.60 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.11 1.76 4.57 -52.49 -0.24 1.52 16 39 H 0.14 2.91 7.23 -52.49 -0.38 2.53 16 40 H 0.18 2.06 6.65 -52.48 -0.35 1.71 16 41 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -34.56 388.81 -6.66 -41.22 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.74 Total: 0.83 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.53 Total: 11.44 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.06 Total: -51.87 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.29 Total: -24.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.56 -6.66 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142450226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.433 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds