Wall clock time and date at job start Tue Mar 31 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 C 1.52990 * 109.47304 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47580 * 180.02562 * 4 3 2 6 6 C 1.36781 * 120.00019 * 270.00293 * 5 4 3 7 7 H 1.08002 * 120.00049 * 43.46301 * 6 5 4 8 8 C 1.39071 * 119.99930 * 223.46553 * 6 5 4 9 9 N 1.31362 * 120.00105 * 14.70666 * 8 6 5 10 10 Si 1.86801 * 119.99950 * 194.70646 * 8 6 5 11 11 H 1.48494 * 109.47126 * 89.99941 * 10 8 6 12 12 H 1.48504 * 109.47116 * 210.00120 * 10 8 6 13 13 H 1.48505 * 109.47273 * 329.99838 * 10 8 6 14 14 C 1.34783 * 120.00608 * 89.99665 * 5 4 3 15 15 O 1.21787 * 120.00359 * 175.31373 * 14 5 4 16 16 C 1.41644 * 119.99306 * 355.31346 * 14 5 4 17 17 C 1.35271 * 119.99600 * 179.53649 * 16 14 5 18 18 C 1.46742 * 119.99851 * 174.48235 * 17 16 14 19 19 C 1.40159 * 120.95137 * 344.59343 * 18 17 16 20 20 N 1.32057 * 119.00650 * 179.97438 * 19 18 17 21 21 C 1.32516 * 121.11263 * 0.02562 * 20 19 18 22 22 O 1.35335 * 118.94083 * 180.02562 * 21 20 19 23 23 C 1.42895 * 116.99631 * 359.97438 * 22 21 20 24 24 N 1.32347 * 122.12646 * 359.70919 * 21 20 19 25 25 C 1.32587 * 120.85039 * 0.58010 * 24 21 20 26 26 O 1.35316 * 120.59667 * 179.71291 * 25 24 21 27 27 C 1.42898 * 116.99683 * 359.72399 * 26 25 24 28 28 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47180 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.46843 * 60.00001 * 1 2 3 31 31 H 1.08998 * 109.47225 * 239.99412 * 2 1 3 32 32 H 1.09001 * 109.46843 * 119.99999 * 2 1 3 33 33 H 1.09002 * 109.47141 * 59.99888 * 3 2 1 34 34 H 1.09005 * 109.46806 * 300.00001 * 3 2 1 35 35 H 1.08998 * 109.47114 * 59.99398 * 4 3 2 36 36 H 1.09005 * 109.47234 * 299.99793 * 4 3 2 37 37 H 0.97001 * 120.00032 * 184.55264 * 9 8 6 38 38 H 1.07999 * 120.00524 * 359.54319 * 16 14 5 39 39 H 1.07999 * 120.00257 * 354.47723 * 17 16 14 40 40 H 1.08003 * 120.49888 * 359.96028 * 19 18 17 41 41 H 1.08998 * 109.47408 * 300.00006 * 23 22 21 42 42 H 1.08996 * 109.47292 * 60.00602 * 23 22 21 43 43 H 1.09000 * 109.47224 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46638 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47155 * 299.99814 * 27 26 25 46 46 H 1.08997 * 109.47399 * 60.00247 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8236 0.0013 6 6 4.2868 3.4688 -1.1830 7 1 3.5745 3.3838 -1.9904 8 6 5.4363 4.2341 -1.3474 9 7 6.4323 4.1138 -0.4995 10 14 5.5638 5.4332 -2.7741 11 1 5.0408 6.7583 -2.3552 12 1 6.9854 5.5683 -3.1816 13 1 4.7666 4.9260 -3.9198 14 6 4.2825 3.4588 1.1687 15 8 4.7687 4.5754 1.1710 16 6 3.9525 2.8275 2.3930 17 6 4.1861 3.4610 3.5651 18 6 3.7348 2.8612 4.8260 19 6 2.7972 1.8194 4.8338 20 7 2.4184 1.3075 5.9906 21 6 2.9089 1.7628 7.1344 22 8 2.4903 1.2055 8.2945 23 6 1.5329 0.1491 8.1983 24 7 3.7995 2.7407 7.1786 25 6 4.2321 3.3172 6.0657 26 8 5.1385 4.3206 6.1172 27 6 5.5902 4.7208 7.4125 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 7.2062 4.6938 -0.5749 38 1 3.5145 1.8403 2.3908 39 1 4.7048 4.4083 3.5729 40 1 2.3905 1.4411 3.9075 41 1 0.6318 0.5187 7.7090 42 1 1.9532 -0.6701 7.6149 43 1 1.2831 -0.2070 9.1977 44 1 6.3118 5.5315 7.3111 45 1 4.7409 5.0628 8.0039 46 1 6.0623 3.8739 7.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142450226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:44 Heat of formation + Delta-G solvation = -49.855559 kcal Electronic energy + Delta-G solvation = -29023.857808 eV Core-core repulsion = 24915.242175 eV Total energy + Delta-G solvation = -4108.615633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50693 -40.45527 -40.26792 -38.84220 -37.00761 -35.71732 -34.89509 -34.29108 -33.57361 -31.02888 -29.53690 -28.58647 -28.47059 -27.09850 -25.63533 -24.73419 -24.17287 -22.68166 -21.79596 -20.45690 -20.23211 -19.59534 -18.56530 -17.88890 -17.80392 -17.34435 -16.95755 -16.77715 -16.34142 -16.09914 -15.80122 -15.39087 -15.38295 -15.17223 -15.01723 -14.75145 -14.40535 -14.25137 -13.79917 -13.38325 -13.18881 -13.03919 -12.97542 -12.91168 -12.85976 -12.82516 -12.58612 -12.45763 -12.20770 -12.11507 -12.08138 -11.94836 -11.68463 -11.30604 -11.24408 -11.12292 -10.76779 -10.53779 -9.99443 -9.16201 -9.01295 -8.09810 -5.94368 -0.63240 -0.06177 0.96604 1.28113 1.40831 1.47295 1.52678 1.91371 2.38974 2.57044 2.87325 3.03802 3.24930 3.37657 3.44478 3.62010 3.82503 4.01372 4.13904 4.27839 4.29528 4.33500 4.35219 4.43787 4.45396 4.46331 4.56092 4.65897 4.69949 4.80672 4.82625 4.90432 4.97734 5.08422 5.13482 5.24947 5.38534 5.40771 5.46117 5.50030 5.54099 5.60897 5.65251 5.80647 6.06636 6.25939 6.83323 7.07664 7.30588 7.74114 8.45946 8.92328 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.003533 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.650700 B = 7923.037894 C =10329.415543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.124 4.124 4 C 0.103 3.897 5 N -0.460 5.460 6 C -0.353 4.353 7 H 0.083 0.917 8 C 0.011 3.989 9 N -0.856 5.856 10 Si 0.968 3.032 11 H -0.291 1.291 12 H -0.284 1.284 13 H -0.252 1.252 14 C 0.475 3.525 15 O -0.591 6.591 16 C -0.179 4.179 17 C -0.031 4.031 18 C -0.218 4.218 19 C 0.232 3.768 20 N -0.576 5.576 21 C 0.524 3.476 22 O -0.300 6.300 23 C 0.038 3.962 24 N -0.591 5.591 25 C 0.403 3.597 26 O -0.302 6.302 27 C 0.030 3.970 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.256 0.744 38 H 0.150 0.850 39 H 0.107 0.893 40 H 0.212 0.788 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 -10.642 14.840 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.180 5.180 6 C -0.482 4.482 7 H 0.101 0.899 8 C -0.196 4.196 9 N -0.491 5.491 10 Si 0.793 3.207 11 H -0.217 1.217 12 H -0.210 1.210 13 H -0.175 1.175 14 C 0.268 3.732 15 O -0.475 6.475 16 C -0.200 4.200 17 C -0.053 4.053 18 C -0.224 4.224 19 C 0.069 3.931 20 N -0.309 5.309 21 C 0.223 3.777 22 O -0.201 6.201 23 C -0.056 4.056 24 N -0.334 5.334 25 C 0.216 3.784 26 O -0.205 6.205 27 C -0.064 4.064 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.167 0.833 39 H 0.125 0.875 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.152 0.848 44 H 0.144 0.856 45 H 0.086 0.914 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.145 -10.316 15.803 21.427 hybrid contribution 0.828 1.325 -1.307 2.037 sum -9.317 -8.992 14.496 19.437 Atomic orbital electron populations 1.21748 0.95145 1.02060 1.01667 1.21451 0.96353 0.94811 1.02775 1.21954 0.94520 0.98134 1.01672 1.21763 0.94759 0.83544 1.01924 1.43499 1.58862 1.11036 1.04632 1.19349 1.03973 1.31621 0.93215 0.89938 1.26118 0.93861 1.00158 0.99444 1.70008 1.05923 1.35510 1.37702 0.85331 0.77270 0.78832 0.79227 1.21742 1.20998 1.17511 1.17442 0.83806 0.86641 0.85302 1.90628 1.46249 1.22786 1.87792 1.22235 1.04323 1.01325 0.92081 1.21488 0.95770 0.98564 0.89493 1.19720 1.06515 1.04419 0.91764 1.23618 0.87038 0.86081 0.96332 1.68154 1.31468 1.33184 0.98107 1.20505 0.85736 0.85818 0.85654 1.86045 1.59003 1.50983 1.24060 1.23353 0.89833 0.86713 1.05714 1.66938 1.19555 1.15613 1.31333 1.20029 0.85392 0.85079 0.87906 1.86330 1.53016 1.46214 1.34921 1.23288 1.00725 1.01578 0.80824 0.91517 0.92475 0.93593 0.91983 0.90400 0.92004 0.93609 0.91907 0.90605 0.93439 0.83263 0.87542 0.77192 0.91343 0.91327 0.84848 0.85623 0.91362 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.12 -2.43 5.93 30.59 0.18 -2.25 16 3 C -0.12 -3.62 5.47 30.59 0.17 -3.46 16 4 C 0.10 3.77 4.96 86.38 0.43 4.20 16 5 N -0.46 -22.96 2.51 -645.59 -1.62 -24.57 16 6 C -0.35 -19.64 9.26 84.12 0.78 -18.86 16 7 H 0.08 4.37 7.88 -2.91 -0.02 4.34 16 8 C 0.01 0.63 4.51 84.96 0.38 1.01 16 9 N -0.86 -53.29 11.21 21.69 0.24 -53.04 16 10 Si 0.97 45.98 29.58 68.60 2.03 48.01 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 14 C 0.48 24.69 6.81 85.08 0.58 25.27 16 15 O -0.59 -36.86 13.37 -4.63 -0.06 -36.93 16 16 C -0.18 -6.98 8.16 22.43 0.18 -6.79 16 17 C -0.03 -1.15 9.15 23.81 0.22 -0.93 16 18 C -0.22 -6.65 5.88 -19.88 -0.12 -6.77 16 19 C 0.23 5.68 10.60 85.13 0.90 6.58 16 20 N -0.58 -14.01 9.17 -312.27 -2.86 -16.87 16 21 C 0.52 13.96 8.48 180.50 1.53 15.49 16 22 O -0.30 -6.76 10.55 -86.23 -0.91 -7.67 16 23 C 0.04 0.50 10.35 113.37 1.17 1.68 16 24 N -0.59 -17.26 9.39 -425.35 -3.99 -21.26 16 25 C 0.40 12.42 7.55 85.29 0.64 13.07 16 26 O -0.30 -9.16 9.86 -86.03 -0.85 -10.01 16 27 C 0.03 0.63 10.41 113.37 1.18 1.81 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.76 7.89 -2.39 -0.02 1.74 16 34 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 36 H 0.08 2.42 6.30 -2.38 -0.02 2.40 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.15 4.43 4.57 -2.91 -0.01 4.41 16 39 H 0.11 4.71 7.23 -2.91 -0.02 4.69 16 40 H 0.21 3.80 6.65 -2.91 -0.02 3.78 16 41 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 43 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 46 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 Total: -1.00 -79.80 388.81 1.91 -77.89 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.99 Total: 16.42 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 8.95 Total: 28.05 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -8.23 Total: -115.75 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -1.82 Total: -54.60 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.80 1.91 -77.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142450226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.030 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds