Wall clock time and date at job start Tue Mar 31 2020 18:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46907 * 239.99968 * 2 1 3 5 5 O 1.45198 * 109.47033 * 120.00114 * 2 1 3 6 6 C 1.34636 * 117.00132 * 59.99924 * 5 2 1 7 7 O 1.21508 * 119.99800 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00119 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00281 * 180.27334 * 8 6 5 10 10 C 1.50692 * 109.47309 * 179.72296 * 9 8 6 11 11 C 1.38274 * 120.38131 * 269.72630 * 10 9 8 12 12 N 1.31858 * 120.91858 * 179.67958 * 11 10 9 13 13 C 1.31824 * 121.79539 * 0.63094 * 12 11 10 14 14 C 1.38842 * 120.65887 * 359.66024 * 13 12 11 15 15 N 1.39961 * 120.48394 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99854 * 212.67866 * 15 14 13 17 17 O 1.21294 * 120.00222 * 5.26319 * 16 15 14 18 18 C 1.50706 * 120.00013 * 185.26615 * 16 15 14 19 19 C 1.50696 * 109.47070 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00414 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00086 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99851 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00262 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46972 * 59.99844 * 23 21 19 25 25 H 1.48496 * 109.47043 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47046 * 299.99899 * 23 21 19 27 27 C 1.38506 * 120.38498 * 90.00159 * 10 9 8 28 28 H 1.08996 * 109.47071 * 300.00052 * 1 2 3 29 29 H 1.09007 * 109.47189 * 59.99671 * 1 2 3 30 30 H 1.08996 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47046 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47077 * 300.00224 * 3 2 1 33 33 H 1.09004 * 109.46958 * 59.99712 * 3 2 1 34 34 H 1.08996 * 109.46975 * 300.00110 * 4 2 1 35 35 H 1.08998 * 109.47044 * 59.99980 * 4 2 1 36 36 H 1.09000 * 109.46448 * 180.02562 * 4 2 1 37 37 H 0.97004 * 119.99698 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.46978 * 299.72709 * 9 8 6 39 39 H 1.09004 * 109.46633 * 59.72282 * 9 8 6 40 40 H 1.08003 * 119.54067 * 359.97438 * 11 10 9 41 41 H 1.08000 * 119.67067 * 179.67777 * 13 12 11 42 42 H 0.96999 * 119.99927 * 32.67529 * 15 14 13 43 43 H 1.09003 * 109.46854 * 299.99706 * 18 16 15 44 44 H 1.08999 * 109.46822 * 59.99915 * 18 16 15 45 45 H 0.97002 * 120.00106 * 180.02562 * 22 21 19 46 46 H 1.07994 * 120.81605 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.6785 -4.0685 2.5804 10 6 2.2736 -4.6096 3.8547 11 6 3.5214 -5.2053 3.8460 12 7 4.0548 -5.6767 4.9559 13 6 3.4235 -5.6132 6.1114 14 6 2.1644 -5.0348 6.1995 15 7 1.4977 -4.9689 7.4283 16 6 0.1530 -5.0497 7.4705 17 8 -0.4732 -5.2749 6.4565 18 6 -0.5726 -4.8601 8.7778 19 6 -2.0563 -4.9978 8.5533 20 1 -2.4361 -5.2017 7.5630 21 6 -2.9292 -4.8624 9.6119 22 7 -2.4669 -4.6136 10.8177 23 14 -4.7686 -5.0323 9.3335 24 1 -5.0649 -6.3841 8.7948 25 1 -5.4835 -4.8457 10.6216 26 1 -5.2195 -4.0029 8.3628 27 6 1.5746 -4.5211 5.0471 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6268 -2.2365 3.0833 38 1 0.5919 -4.1414 2.6271 39 1 2.0455 -4.6480 1.7332 40 1 4.0687 -5.2813 2.9181 41 1 3.8905 -6.0149 6.9985 42 1 2.0034 -4.8652 8.2495 43 1 -0.2409 -5.6155 9.4902 44 1 -0.3558 -3.8677 9.1730 45 1 -3.0810 -4.5187 11.5625 46 1 0.5965 -4.0645 5.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:27 Heat of formation + Delta-G solvation = -90.399538 kcal Electronic energy + Delta-G solvation = -28130.984110 eV Core-core repulsion = 24020.610358 eV Total energy + Delta-G solvation = -4110.373752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01019 -40.61054 -38.81419 -37.64771 -35.41709 -34.64100 -34.23768 -33.10142 -32.17325 -30.47612 -28.62121 -27.68744 -27.62053 -26.83632 -24.42461 -23.34527 -22.65128 -21.64256 -20.31474 -19.97373 -18.51156 -17.43546 -16.90957 -16.87380 -16.75988 -16.37717 -16.05098 -15.60664 -15.43053 -14.81080 -14.68398 -14.54339 -14.41300 -13.77354 -13.68125 -13.40549 -13.29194 -13.19069 -12.90310 -12.77321 -12.43166 -12.22437 -12.17930 -12.15786 -12.06763 -11.66170 -11.57007 -11.48683 -10.92413 -10.80856 -10.59434 -10.57043 -10.30352 -10.09162 -9.77851 -9.60107 -9.44516 -9.37995 -8.88287 -8.54867 -8.13154 -6.17821 -4.18863 0.85654 1.25771 2.08731 2.68660 3.27080 3.30850 3.33357 3.34656 3.44556 3.77804 4.07228 4.31001 4.39390 4.44636 4.49171 4.56594 4.63475 4.84845 4.90131 5.01362 5.18818 5.20825 5.23838 5.27145 5.39050 5.41219 5.48545 5.51493 5.59341 5.60033 5.71006 5.92514 5.93590 6.04002 6.10438 6.17272 6.19370 6.33531 6.35504 6.87476 6.99385 7.11764 7.22639 7.66113 7.84896 7.88494 8.14840 8.20647 8.79827 8.91347 9.46998 10.94187 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002543 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.561556 B =11008.176392 C =12996.136680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.651 3.349 7 O -0.567 6.567 8 N -0.706 5.706 9 C 0.187 3.813 10 C -0.146 4.146 11 C 0.087 3.913 12 N -0.466 5.466 13 C 0.072 3.928 14 C 0.118 3.882 15 N -0.685 5.685 16 C 0.514 3.486 17 O -0.521 6.521 18 C 0.008 3.992 19 C -0.515 4.515 20 H 0.075 0.925 21 C 0.058 3.942 22 N -0.899 5.899 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.063 4.063 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.407 0.593 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.412 0.588 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.264 0.736 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 8.220 -17.392 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.457 6.457 8 N -0.366 5.366 9 C 0.065 3.935 10 C -0.149 4.149 11 C -0.072 4.072 12 N -0.173 5.173 13 C -0.088 4.088 14 C 0.019 3.981 15 N -0.332 5.332 16 C 0.306 3.694 17 O -0.394 6.394 18 C -0.031 4.031 19 C -0.553 4.553 20 H 0.093 0.907 21 C -0.144 4.144 22 N -0.538 5.538 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.092 4.092 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.242 0.758 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.117 7.514 -18.369 24.354 hybrid contribution -1.326 0.514 0.815 1.639 sum 12.790 8.028 -17.554 23.155 Atomic orbital electron populations 1.22530 0.93881 1.05240 1.02567 1.22074 0.94474 0.91473 0.82028 1.21864 1.02188 0.92574 1.03188 1.22516 1.01471 1.03574 0.96465 1.86304 1.71550 1.23619 1.46536 1.18047 0.78852 0.80508 0.82192 1.90909 1.40924 1.70468 1.43365 1.44802 1.55770 1.12283 1.23696 1.20061 1.00478 0.78722 0.94282 1.20635 0.96447 1.02818 0.95029 1.22535 0.92231 0.95765 0.96666 1.67648 1.35075 1.16213 0.98391 1.22669 0.92275 0.97311 0.96546 1.18986 0.93899 0.96975 0.88191 1.44183 1.08448 1.73866 1.06698 1.22455 0.79701 0.73064 0.94193 1.90567 1.66117 1.45594 1.37125 1.19286 0.96186 0.99700 0.87942 1.21067 0.89321 1.49094 0.95837 0.90651 1.24996 0.99583 0.94894 0.94926 1.69935 1.35365 1.48859 0.99606 0.86456 0.84198 0.78974 0.77273 1.20039 1.21253 1.20036 1.21668 1.00850 0.95944 0.90725 0.92038 0.91154 0.89268 0.91501 0.90142 0.91394 0.89324 0.91166 0.92217 0.75820 0.89661 0.89787 0.82815 0.82451 0.75191 0.92948 0.92851 0.92651 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 8.37 37.16 0.31 -1.48 16 2 C 0.14 1.28 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 4 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 5 O -0.37 -4.14 9.94 -40.31 -0.40 -4.54 16 6 C 0.65 8.06 8.06 54.05 0.44 8.50 16 7 O -0.57 -8.16 11.88 -19.28 -0.23 -8.39 16 8 N -0.71 -7.55 5.55 -66.47 -0.37 -7.92 16 9 C 0.19 2.06 5.82 -5.20 -0.03 2.03 16 10 C -0.15 -1.74 5.26 -104.51 -0.55 -2.29 16 11 C 0.09 0.99 10.85 -17.53 -0.19 0.80 16 12 N -0.47 -5.98 10.35 -13.09 -0.14 -6.11 16 13 C 0.07 0.91 11.12 -17.33 -0.19 0.72 16 14 C 0.12 1.71 6.31 -83.54 -0.53 1.18 16 15 N -0.69 -10.54 5.35 -9.76 -0.05 -10.59 16 16 C 0.51 10.58 7.59 -10.98 -0.08 10.50 16 17 O -0.52 -12.25 13.15 5.55 0.07 -12.18 16 18 C 0.01 0.19 5.46 -29.03 -0.16 0.03 16 19 C -0.51 -14.17 8.92 -34.44 -0.31 -14.48 16 20 H 0.08 2.16 6.75 -52.48 -0.35 1.81 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.06 -0.93 8.45 -39.10 -0.33 -1.26 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.41 3.79 8.57 -40.82 -0.35 3.44 16 38 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 39 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 40 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 41 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.41 4.97 8.82 -40.82 -0.36 4.61 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.15 2.55 6.48 -52.49 -0.34 2.21 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -32.65 386.69 -7.40 -40.05 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.64 Total: 7.00 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.18 Total: 4.98 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.18 Total: -49.21 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.56 Total: -25.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.65 -7.40 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.352 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds