Wall clock time and date at job start Tue Mar 31 2020 18:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46907 * 239.99968 * 2 1 3 5 5 O 1.45198 * 109.47033 * 120.00114 * 2 1 3 6 6 C 1.34636 * 117.00132 * 59.99924 * 5 2 1 7 7 O 1.21508 * 119.99800 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00119 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00281 * 180.27334 * 8 6 5 10 10 C 1.50692 * 109.47309 * 179.72296 * 9 8 6 11 11 C 1.38274 * 120.38131 * 269.72630 * 10 9 8 12 12 N 1.31858 * 120.91858 * 179.67958 * 11 10 9 13 13 C 1.31824 * 121.79539 * 0.63094 * 12 11 10 14 14 C 1.38842 * 120.65887 * 359.66024 * 13 12 11 15 15 N 1.39961 * 120.48394 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99854 * 212.67866 * 15 14 13 17 17 O 1.21294 * 120.00222 * 5.26319 * 16 15 14 18 18 C 1.50706 * 120.00013 * 185.26615 * 16 15 14 19 19 C 1.50696 * 109.47070 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00414 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00086 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99851 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00262 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46972 * 59.99844 * 23 21 19 25 25 H 1.48496 * 109.47043 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47046 * 299.99899 * 23 21 19 27 27 C 1.38506 * 120.38498 * 90.00159 * 10 9 8 28 28 H 1.08996 * 109.47071 * 300.00052 * 1 2 3 29 29 H 1.09007 * 109.47189 * 59.99671 * 1 2 3 30 30 H 1.08996 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47046 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47077 * 300.00224 * 3 2 1 33 33 H 1.09004 * 109.46958 * 59.99712 * 3 2 1 34 34 H 1.08996 * 109.46975 * 300.00110 * 4 2 1 35 35 H 1.08998 * 109.47044 * 59.99980 * 4 2 1 36 36 H 1.09000 * 109.46448 * 180.02562 * 4 2 1 37 37 H 0.97004 * 119.99698 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.46978 * 299.72709 * 9 8 6 39 39 H 1.09004 * 109.46633 * 59.72282 * 9 8 6 40 40 H 1.08003 * 119.54067 * 359.97438 * 11 10 9 41 41 H 1.08000 * 119.67067 * 179.67777 * 13 12 11 42 42 H 0.96999 * 119.99927 * 32.67529 * 15 14 13 43 43 H 1.09003 * 109.46854 * 299.99706 * 18 16 15 44 44 H 1.08999 * 109.46822 * 59.99915 * 18 16 15 45 45 H 0.97002 * 120.00106 * 180.02562 * 22 21 19 46 46 H 1.07994 * 120.81605 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.6785 -4.0685 2.5804 10 6 2.2736 -4.6096 3.8547 11 6 3.5214 -5.2053 3.8460 12 7 4.0548 -5.6767 4.9559 13 6 3.4235 -5.6132 6.1114 14 6 2.1644 -5.0348 6.1995 15 7 1.4977 -4.9689 7.4283 16 6 0.1530 -5.0497 7.4705 17 8 -0.4732 -5.2749 6.4565 18 6 -0.5726 -4.8601 8.7778 19 6 -2.0563 -4.9978 8.5533 20 1 -2.4361 -5.2017 7.5630 21 6 -2.9292 -4.8624 9.6119 22 7 -2.4669 -4.6136 10.8177 23 14 -4.7686 -5.0323 9.3335 24 1 -5.0649 -6.3841 8.7948 25 1 -5.4835 -4.8457 10.6216 26 1 -5.2195 -4.0029 8.3628 27 6 1.5746 -4.5211 5.0471 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6268 -2.2365 3.0833 38 1 0.5919 -4.1414 2.6271 39 1 2.0455 -4.6480 1.7332 40 1 4.0687 -5.2813 2.9181 41 1 3.8905 -6.0149 6.9985 42 1 2.0034 -4.8652 8.2495 43 1 -0.2409 -5.6155 9.4902 44 1 -0.3558 -3.8677 9.1730 45 1 -3.0810 -4.5187 11.5625 46 1 0.5965 -4.0645 5.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:26 Heat of formation + Delta-G solvation = -113.458971 kcal Electronic energy + Delta-G solvation = -28131.984042 eV Core-core repulsion = 24020.610358 eV Total energy + Delta-G solvation = -4111.373684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00972 -41.69135 -40.23094 -38.53337 -36.48285 -35.94572 -35.15533 -35.03347 -33.18863 -31.92534 -30.28829 -28.35482 -28.28911 -27.80002 -26.13659 -24.62230 -23.68222 -22.68660 -21.49155 -21.15443 -19.43590 -18.70909 -18.54794 -17.95993 -17.72409 -17.56589 -17.31520 -17.02063 -16.49903 -16.25811 -15.97523 -15.67756 -15.41670 -14.90845 -14.83971 -14.46180 -14.30617 -14.23517 -14.20873 -14.11330 -13.38098 -13.33679 -13.14877 -13.00809 -12.89769 -12.85764 -12.85063 -12.63243 -12.46078 -12.34039 -12.08533 -11.93562 -11.51307 -11.39261 -11.22711 -11.04147 -10.67477 -10.64358 -10.36996 -10.26894 -9.32238 -8.28470 -6.35502 -0.15186 0.13962 1.21814 1.39632 1.40995 1.49628 1.72052 1.72666 2.07318 2.41824 2.74011 3.07809 3.21933 3.33404 3.63648 3.75845 3.79919 3.81124 3.87863 3.95437 3.95950 4.23308 4.36669 4.50597 4.60535 4.61049 4.62987 4.77580 4.77636 4.86084 4.88878 4.97717 5.02944 5.06328 5.13751 5.19277 5.20541 5.23728 5.29281 5.35615 5.54765 5.66397 5.75502 5.98313 6.32704 6.49645 6.77055 6.86882 7.22471 7.28567 7.35855 8.83078 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002543 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.561556 B =11008.176392 C =12996.136680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.369 6.369 6 C 0.647 3.353 7 O -0.591 6.591 8 N -0.698 5.698 9 C 0.193 3.807 10 C -0.137 4.137 11 C 0.102 3.898 12 N -0.475 5.475 13 C 0.088 3.912 14 C 0.093 3.907 15 N -0.665 5.665 16 C 0.521 3.479 17 O -0.557 6.557 18 C 0.011 3.989 19 C -0.539 4.539 20 H 0.056 0.944 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.414 0.586 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.187 0.813 41 H 0.186 0.814 42 H 0.428 0.572 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.268 0.732 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.941 8.676 -18.409 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.482 6.482 8 N -0.358 5.358 9 C 0.071 3.929 10 C -0.140 4.140 11 C -0.056 4.056 12 N -0.182 5.182 13 C -0.072 4.072 14 C -0.004 4.004 15 N -0.312 5.312 16 C 0.312 3.688 17 O -0.434 6.434 18 C -0.029 4.029 19 C -0.577 4.577 20 H 0.074 0.926 21 C -0.185 4.185 22 N -0.561 5.561 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.204 0.796 41 H 0.203 0.797 42 H 0.268 0.732 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.858 7.988 -19.366 26.275 hybrid contribution -1.761 0.401 1.049 2.089 sum 14.097 8.389 -18.317 24.589 Atomic orbital electron populations 1.22500 0.94416 1.03608 1.03470 1.22436 0.94291 0.92836 0.81648 1.21890 1.02577 0.90605 1.04226 1.22461 1.01799 1.02197 0.97055 1.86318 1.71521 1.22953 1.47601 1.18200 0.78645 0.80883 0.82195 1.90905 1.41936 1.71039 1.44289 1.44723 1.55483 1.12131 1.23468 1.19971 0.99339 0.79156 0.94469 1.20592 0.96550 1.02652 0.94162 1.23042 0.91566 0.93520 0.97500 1.67793 1.35095 1.16630 0.98700 1.23032 0.90966 0.95638 0.97573 1.19099 0.94926 0.99050 0.87332 1.43637 1.06695 1.72669 1.08198 1.21770 0.81345 0.73168 0.92495 1.90554 1.67487 1.47654 1.37724 1.19097 0.94841 0.99340 0.89576 1.21309 0.91789 1.49484 0.95136 0.92603 1.25713 1.03567 0.94525 0.94732 1.70000 1.36703 1.49268 1.00102 0.85577 0.79537 0.78824 0.77582 1.19875 1.19943 1.19898 1.21581 1.00128 0.96689 0.92260 0.92464 0.88931 0.92068 0.90883 0.87883 0.91582 0.91877 0.89098 0.91572 0.74932 0.91693 0.88072 0.79569 0.79664 0.73237 0.93123 0.93205 0.92314 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.19 16 3 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 4 C -0.18 -2.93 8.37 71.98 0.60 -2.32 16 5 O -0.37 -8.19 9.94 -55.45 -0.55 -8.74 16 6 C 0.65 16.04 8.06 129.79 1.05 17.09 16 7 O -0.59 -17.37 11.88 19.81 0.24 -17.13 16 8 N -0.70 -14.67 5.55 -594.63 -3.30 -17.97 16 9 C 0.19 4.18 5.82 85.63 0.50 4.68 16 10 C -0.14 -3.12 5.26 -19.79 -0.10 -3.22 16 11 C 0.10 2.04 10.85 84.70 0.92 2.96 16 12 N -0.47 -10.80 10.35 -195.32 -2.02 -12.82 16 13 C 0.09 2.00 11.12 84.84 0.94 2.95 16 14 C 0.09 2.63 6.31 38.24 0.24 2.87 16 15 N -0.66 -20.26 5.35 -303.19 -1.62 -21.88 16 16 C 0.52 21.98 7.59 87.66 0.67 22.65 16 17 O -0.56 -27.28 13.15 -3.07 -0.04 -27.32 16 18 C 0.01 0.52 5.46 29.10 0.16 0.68 16 19 C -0.54 -30.46 8.92 25.60 0.23 -30.23 16 20 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 21 C 0.01 0.77 5.46 84.65 0.46 1.23 16 22 N -0.92 -52.18 13.29 21.45 0.28 -51.90 16 23 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 C -0.08 -2.31 8.45 22.58 0.19 -2.12 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.41 7.39 8.57 -92.71 -0.79 6.60 16 38 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 39 H 0.10 1.87 8.09 -2.38 -0.02 1.85 16 40 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 42 H 0.43 9.92 8.82 -92.71 -0.82 9.10 16 43 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.12 4.36 6.48 -2.91 -0.02 4.34 16 Total: -1.00 -71.91 386.69 1.50 -70.42 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.59 Total: 25.35 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.08 Total: 15.60 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -6.66 Total: -104.57 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.36 Total: -53.19 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.91 1.50 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.043 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds