Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47130 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99790 * 2 1 3 5 5 O 1.45196 * 109.47350 * 119.99675 * 2 1 3 6 6 C 1.34638 * 116.99816 * 58.63009 * 5 2 1 7 7 O 1.21509 * 119.99871 * 3.11348 * 6 5 2 8 8 N 1.34777 * 119.99835 * 183.10930 * 6 5 2 9 9 C 1.46501 * 119.99983 * 174.76573 * 8 6 5 10 10 H 1.09001 * 109.47396 * 328.27559 * 9 8 6 11 11 C 1.53003 * 109.47195 * 208.27768 * 9 8 6 12 12 C 1.50696 * 109.47047 * 65.79881 * 11 9 8 13 13 C 1.38228 * 119.61907 * 122.52337 * 12 11 9 14 14 C 1.38631 * 119.16266 * 179.75050 * 13 12 11 15 15 C 1.38668 * 118.41951 * 0.51089 * 14 13 12 16 16 C 1.38184 * 119.16074 * 359.73040 * 15 14 13 17 17 N 1.31851 * 119.61825 * 302.79346 * 12 11 9 18 18 C 1.50702 * 109.47269 * 88.27534 * 9 8 6 19 19 O 1.21292 * 119.99807 * 0.02562 * 18 9 8 20 20 N 1.34775 * 120.00216 * 179.97438 * 18 9 8 21 21 C 1.37097 * 120.00112 * 179.97438 * 20 18 9 22 22 H 1.08004 * 119.99750 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99920 * 179.72612 * 21 20 18 24 24 N 1.31408 * 120.00198 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47033 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46808 * 120.00005 * 25 23 21 28 28 H 1.48497 * 109.46768 * 239.99895 * 25 23 21 29 29 H 1.08993 * 109.47789 * 303.94502 * 1 2 3 30 30 H 1.08996 * 109.46970 * 63.95316 * 1 2 3 31 31 H 1.09001 * 109.46592 * 183.94087 * 1 2 3 32 32 H 1.08995 * 109.47691 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46902 * 299.99857 * 3 2 1 34 34 H 1.08995 * 109.46928 * 59.99537 * 3 2 1 35 35 H 1.09001 * 109.47246 * 300.00217 * 4 2 1 36 36 H 1.09007 * 109.46942 * 59.99835 * 4 2 1 37 37 H 1.09003 * 109.47514 * 179.97438 * 4 2 1 38 38 H 0.97003 * 120.00393 * 354.76982 * 8 6 5 39 39 H 1.08999 * 109.46756 * 185.79962 * 11 9 8 40 40 H 1.08996 * 109.46987 * 305.79337 * 11 9 8 41 41 H 1.08008 * 120.41953 * 359.97438 * 13 12 11 42 42 H 1.07997 * 120.79052 * 180.25967 * 14 13 12 43 43 H 1.07994 * 120.41916 * 179.70833 * 15 14 13 44 44 H 1.08002 * 119.61347 * 180.02562 * 16 15 14 45 45 H 0.96997 * 119.99952 * 0.02562 * 20 18 9 46 46 H 0.97002 * 120.00104 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6290 -1.9636 1.3528 7 8 0.9551 -2.5113 0.5029 8 7 1.9912 -2.6367 2.4629 9 6 1.4786 -3.9885 2.6999 10 1 0.4798 -4.0784 2.2728 11 6 1.4150 -4.2532 4.2055 12 6 0.3922 -3.3416 4.8330 13 6 -0.6620 -3.8842 5.5436 14 6 -1.5946 -3.0367 6.1213 15 6 -1.4372 -1.6693 5.9530 16 6 -0.3605 -1.2000 5.2250 17 7 0.5103 -2.0358 4.6935 18 6 2.3946 -4.9941 2.0512 19 8 3.3792 -4.6186 1.4505 20 7 2.1205 -6.3107 2.1395 21 6 2.9536 -7.2255 1.5490 22 1 3.8298 -6.8910 1.0134 23 6 2.6740 -8.5832 1.6449 24 7 1.6109 -8.9904 2.3011 25 14 3.8096 -9.8296 0.8408 26 1 4.9267 -9.1195 0.1678 27 1 4.3554 -10.7425 1.8771 28 1 3.0489 -10.6175 -0.1620 29 1 -0.3634 0.5738 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 -0.3632 -1.0253 0.0706 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6768 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7209 -1.2494 38 1 2.5913 -2.2261 3.1050 39 1 1.1324 -5.2913 4.3802 40 1 2.3922 -4.0631 4.6493 41 1 -0.7560 -4.9549 5.6503 42 1 -2.4262 -3.4321 6.6856 43 1 -2.1473 -0.9799 6.3852 44 1 -0.2306 -0.1364 5.0897 45 1 1.3334 -6.6110 2.6202 46 1 1.4159 -9.9382 2.3684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143316057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = -84.826093 kcal Electronic energy + Delta-G solvation = -29879.268315 eV Core-core repulsion = 25769.136245 eV Total energy + Delta-G solvation = -4110.132069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54095 -40.08159 -38.53410 -36.70646 -34.85753 -33.92743 -33.81503 -32.41670 -32.20449 -31.21532 -29.07119 -27.32990 -27.20515 -25.58659 -24.20836 -23.48216 -22.13180 -21.51638 -19.69246 -19.21261 -17.99467 -17.83572 -16.87491 -16.37470 -16.24535 -16.10110 -15.50382 -15.38961 -14.99914 -14.58119 -14.32035 -14.05537 -13.94788 -13.68731 -13.54846 -13.23168 -13.17849 -12.91328 -12.52609 -12.42891 -12.08916 -11.99249 -11.76868 -11.68253 -11.61187 -11.55571 -11.37161 -11.22430 -11.07093 -11.02684 -10.33438 -10.22771 -10.08322 -9.89777 -9.61498 -9.52617 -9.43982 -9.10695 -9.00849 -8.04622 -7.97200 -6.42010 -3.82217 1.06747 1.25832 2.58764 3.16681 3.27992 3.34996 3.42425 3.71243 3.90160 4.17523 4.25787 4.51207 4.64930 4.78129 4.85826 4.88495 5.01625 5.04149 5.04739 5.08553 5.17782 5.36279 5.46437 5.51095 5.55108 5.62064 5.71337 5.71746 5.75122 5.83616 5.88681 6.00530 6.05524 6.06702 6.12067 6.17146 6.25192 6.41723 6.55537 6.66587 6.80111 6.97546 7.55969 7.98408 8.02466 8.04530 8.59126 8.95190 9.17774 9.51732 10.02754 10.75456 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.004299 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.962185 B = 6511.052273 C = 9195.999655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.661 3.339 7 O -0.574 6.574 8 N -0.664 5.664 9 C 0.168 3.832 10 H 0.101 0.899 11 C -0.078 4.078 12 C 0.135 3.865 13 C -0.166 4.166 14 C -0.075 4.075 15 C -0.183 4.183 16 C 0.101 3.899 17 N -0.470 5.470 18 C 0.432 3.568 19 O -0.579 6.579 20 N -0.558 5.558 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.900 5.900 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.408 0.592 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.152 0.848 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 16.600 6.627 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.414 3.586 7 O -0.463 6.463 8 N -0.321 5.321 9 C 0.059 3.941 10 H 0.118 0.882 11 C -0.116 4.116 12 C -0.002 4.002 13 C -0.186 4.186 14 C -0.101 4.101 15 C -0.203 4.203 16 C -0.057 4.057 17 N -0.179 5.179 18 C 0.216 3.784 19 O -0.462 6.462 20 N -0.194 5.194 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.163 16.784 5.303 18.650 hybrid contribution -0.583 -1.033 0.639 1.347 sum -6.746 15.752 5.943 18.136 Atomic orbital electron populations 1.22500 0.94473 1.05046 1.01869 1.21925 0.93990 0.91288 0.82757 1.21831 1.02205 0.92910 1.02593 1.22510 1.01664 1.03851 0.96016 1.86263 1.70857 1.24898 1.45999 1.17839 0.78502 0.79989 0.82318 1.90870 1.43591 1.69363 1.42497 1.43908 1.51374 1.14699 1.22080 1.20551 0.98605 0.81137 0.93827 0.88154 1.20960 0.98569 0.98758 0.93344 1.21223 0.94412 0.90803 0.93793 1.22078 0.95530 1.01628 0.99326 1.21561 0.98134 0.93469 0.96963 1.22099 1.00096 0.96335 1.01783 1.22727 0.90329 0.99634 0.92968 1.67503 1.28280 1.03578 1.18502 1.20136 0.88403 0.83482 0.86427 1.90538 1.29834 1.79250 1.46619 1.41850 1.25286 1.04035 1.48275 1.19756 1.06597 0.85990 1.30295 0.87884 1.25235 0.97201 0.97907 0.97421 1.69606 1.26193 1.16548 1.41831 0.85814 0.79911 0.79977 0.78749 1.19239 1.20748 1.20744 0.92551 0.91581 0.89318 0.91570 0.90556 0.91737 0.88998 0.91763 0.92206 0.75694 0.87498 0.88578 0.84353 0.85005 0.85206 0.83092 0.77475 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.40 37.16 0.31 -2.10 16 2 C 0.14 1.94 1.13 -90.62 -0.10 1.84 16 3 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 4 C -0.18 -2.73 8.40 37.16 0.31 -2.42 16 5 O -0.37 -6.20 9.94 -40.32 -0.40 -6.60 16 6 C 0.66 12.83 8.00 54.06 0.43 13.26 16 7 O -0.57 -12.54 11.54 -19.28 -0.22 -12.76 16 8 N -0.66 -12.06 3.31 -59.86 -0.20 -12.26 16 9 C 0.17 3.13 2.36 -69.08 -0.16 2.96 16 10 H 0.10 1.95 7.55 -51.93 -0.39 1.56 16 11 C -0.08 -1.14 5.15 -27.88 -0.14 -1.28 16 12 C 0.14 1.81 6.15 -82.59 -0.51 1.31 16 13 C -0.17 -1.89 9.71 -39.44 -0.38 -2.28 16 14 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 15 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 16 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 17 N -0.47 -6.35 8.80 -9.47 -0.08 -6.43 16 18 C 0.43 10.32 7.17 -10.98 -0.08 10.24 16 19 O -0.58 -16.13 15.99 5.55 0.09 -16.04 16 20 N -0.56 -13.94 5.14 -10.96 -0.06 -14.00 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.45 5.79 -51.93 -0.30 1.15 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.70 5.88 -51.93 -0.31 1.40 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.41 6.77 8.54 -40.82 -0.35 6.42 16 39 H 0.11 1.49 7.13 -51.93 -0.37 1.12 16 40 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.14 1.37 7.95 -52.48 -0.42 0.95 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.39 9.19 7.25 -40.82 -0.30 8.90 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -34.07 385.49 -7.18 -41.26 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -6.59 Total: 18.04 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.23 Total: 10.25 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.39 Total: -55.94 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.53 Total: -35.41 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.07 -7.18 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143316057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.571 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds