Wall clock time and date at job start Tue Mar 31 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47315 * 240.00214 * 2 1 3 5 5 O 1.45202 * 109.47365 * 119.99874 * 2 1 3 6 6 C 1.34233 * 116.99483 * 60.00205 * 5 2 1 7 7 O 1.20820 * 120.00533 * 359.97438 * 6 5 2 8 8 C 1.50704 * 119.99544 * 180.02562 * 6 5 2 9 9 H 1.08994 * 109.47826 * 59.99856 * 8 6 5 10 10 C 1.53007 * 109.46982 * 299.99639 * 8 6 5 11 11 C 1.50701 * 109.46679 * 174.79388 * 10 8 6 12 12 N 1.34786 * 119.99508 * 183.44946 * 11 10 8 13 13 O 1.21278 * 120.00519 * 3.44320 * 11 10 8 14 14 N 1.46503 * 109.47023 * 180.02562 * 8 6 5 15 15 C 1.38095 * 119.99447 * 273.39143 * 14 8 6 16 16 N 1.32260 * 119.90678 * 355.23544 * 15 14 8 17 17 C 1.31965 * 121.86861 * 179.97438 * 16 15 14 18 18 C 1.38689 * 121.44573 * 359.97438 * 17 16 15 19 19 C 1.38006 * 119.62417 * 0.28376 * 18 17 16 20 20 C 1.40999 * 118.28311 * 359.46243 * 19 18 17 21 21 C 1.41016 * 120.71138 * 180.23964 * 20 19 18 22 22 H 1.07998 * 120.00467 * 208.17634 * 21 20 19 23 23 C 1.39952 * 119.99620 * 28.17177 * 21 20 19 24 24 N 1.30868 * 119.99944 * 12.21906 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 192.22004 * 23 21 20 26 26 H 1.48495 * 109.47382 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47104 * 119.99935 * 25 23 21 28 28 H 1.48498 * 109.47269 * 239.99764 * 25 23 21 29 29 H 1.09005 * 109.47341 * 299.99672 * 1 2 3 30 30 H 1.08992 * 109.47122 * 59.99679 * 1 2 3 31 31 H 1.08996 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47258 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47381 * 300.00163 * 3 2 1 34 34 H 1.09011 * 109.47151 * 60.00092 * 3 2 1 35 35 H 1.08996 * 109.46807 * 299.99934 * 4 2 1 36 36 H 1.09001 * 109.47087 * 60.00127 * 4 2 1 37 37 H 1.09005 * 109.47365 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47163 * 294.79403 * 10 8 6 39 39 H 1.09000 * 109.47199 * 54.79478 * 10 8 6 40 40 H 0.96997 * 120.00012 * 359.97438 * 12 11 10 41 41 H 0.96993 * 119.99846 * 179.97438 * 12 11 10 42 42 H 0.96992 * 120.00471 * 93.39155 * 14 8 6 43 43 H 1.07996 * 119.28325 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.18971 * 180.02562 * 18 17 16 45 45 H 1.08003 * 120.85791 * 179.70148 * 19 18 17 46 46 H 0.97002 * 119.99813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5083 8 6 2.1174 -2.7434 2.5441 9 1 1.7533 -2.2585 3.4498 10 6 3.6468 -2.7839 2.5669 11 6 4.1127 -3.4469 3.8375 12 7 5.4302 -3.5324 4.1089 13 8 3.3024 -3.9035 4.6158 14 7 1.5942 -4.1102 2.4773 15 6 0.3403 -4.3948 2.9810 16 7 -0.3478 -3.4548 3.6072 17 6 -1.5491 -3.6841 4.1030 18 6 -2.1527 -4.9277 3.9911 19 6 -1.4864 -5.9545 3.3537 20 6 -0.2061 -5.6929 2.8241 21 6 0.5181 -6.7033 2.1584 22 1 1.5979 -6.6827 2.1576 23 6 -0.1625 -7.7330 1.4987 24 7 -1.4512 -7.6378 1.2915 25 14 0.7685 -9.2432 0.9139 26 1 2.2041 -9.1078 1.2685 27 1 0.2096 -10.4534 1.5683 28 1 0.6318 -9.3693 -0.5593 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 1.6767 -1.7488 -1.2492 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 4.0081 -3.3496 1.7082 39 1 4.0378 -1.7674 2.5230 40 1 6.0783 -3.1675 3.4863 41 1 5.7302 -3.9588 4.9268 42 1 2.1285 -4.8152 2.0794 43 1 -2.0737 -2.8859 4.6070 44 1 -3.1369 -5.0928 4.4040 45 1 -1.9358 -6.9321 3.2594 46 1 -1.9228 -8.3513 0.8339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167918371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:16 Heat of formation + Delta-G solvation = -91.458579 kcal Electronic energy + Delta-G solvation = -30365.914977 eV Core-core repulsion = 26255.495301 eV Total energy + Delta-G solvation = -4110.419676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58460 -39.34317 -38.30189 -36.76525 -34.79706 -33.83508 -33.81633 -33.55207 -31.15939 -30.27974 -27.95989 -27.38932 -27.28798 -25.50594 -25.17182 -22.09060 -21.27458 -20.58004 -20.22361 -19.12870 -17.52610 -17.17219 -17.12187 -16.64822 -16.32596 -15.92429 -15.59495 -15.42167 -14.86009 -14.57581 -14.17511 -13.88476 -13.79748 -13.61474 -13.24536 -13.18099 -12.85497 -12.49904 -12.35727 -12.27721 -12.09184 -11.82689 -11.77785 -11.59709 -11.55405 -11.33250 -11.22471 -11.09065 -11.02205 -10.83296 -10.46690 -10.14759 -9.83807 -9.72900 -9.66404 -9.59223 -9.22637 -8.93097 -7.98605 -7.77235 -6.67380 -6.44998 -4.14256 2.70306 2.76761 2.81141 2.89982 3.12060 3.16187 3.24785 3.36992 3.61461 4.00809 4.30387 4.73448 4.78866 4.81457 4.83637 4.89339 4.98451 5.21285 5.34986 5.46170 5.49267 5.56967 5.68638 5.77586 5.86171 5.91940 5.95110 6.00139 6.06971 6.16907 6.33514 6.48351 6.54428 6.83296 6.84416 6.89121 6.95848 7.22848 7.26690 7.36073 7.72240 7.90306 8.10175 8.26484 8.39102 8.40609 8.51768 8.74525 8.90444 9.07076 9.85621 10.34470 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.004467 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.374177 B = 6267.330911 C = 6935.989161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.360 6.360 6 C 0.442 3.558 7 O -0.477 6.477 8 C 0.196 3.804 9 H 0.126 0.874 10 C -0.148 4.148 11 C 0.512 3.488 12 N -0.863 5.863 13 O -0.506 6.506 14 N -0.689 5.689 15 C 0.322 3.678 16 N -0.532 5.532 17 C 0.008 3.992 18 C -0.193 4.193 19 C -0.119 4.119 20 C 0.038 3.962 21 C -0.453 4.453 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.804 5.804 25 Si 0.907 3.093 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.397 0.603 41 H 0.400 0.600 42 H 0.405 0.595 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.644 12.209 -2.444 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.080 3.920 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.280 3.720 7 O -0.361 6.361 8 C 0.084 3.916 9 H 0.144 0.856 10 C -0.189 4.189 11 C 0.296 3.704 12 N -0.428 5.428 13 O -0.378 6.378 14 N -0.327 5.327 15 C 0.085 3.915 16 N -0.248 5.248 17 C -0.146 4.146 18 C -0.215 4.215 19 C -0.146 4.146 20 C 0.032 3.968 21 C -0.485 4.485 22 H 0.090 0.910 23 C -0.141 4.141 24 N -0.431 5.431 25 Si 0.732 3.268 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.202 1.202 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.225 0.775 41 H 0.230 0.770 42 H 0.243 0.757 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.142 0.858 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.818 12.670 -2.296 17.478 hybrid contribution 0.422 -1.748 -0.839 1.984 sum 12.239 10.922 -3.135 16.701 Atomic orbital electron populations 1.22465 0.94178 1.05159 1.02154 1.22053 0.94436 0.91966 0.83571 1.21825 1.01792 0.93150 1.02746 1.22472 1.01190 1.03521 0.96668 1.86555 1.70165 1.26348 1.44750 1.25053 0.78442 0.80175 0.88295 1.90597 1.33573 1.69745 1.42174 1.19775 0.91026 0.86150 0.94618 0.85647 1.21919 0.95970 1.03588 0.97390 1.20405 0.82487 0.79530 0.87986 1.43863 1.07535 1.64349 1.27057 1.90905 1.52843 1.45352 1.48736 1.43211 1.16830 1.05368 1.67261 1.18271 0.86909 0.89650 0.96706 1.66428 1.09121 1.35203 1.14092 1.21315 0.92079 0.95747 1.05480 1.21401 0.99859 0.95480 1.04744 1.21343 0.96193 0.98511 0.98528 1.17855 0.93821 0.90686 0.94459 1.19107 0.93897 1.06433 1.29102 0.90996 1.25772 0.94890 0.99001 0.94476 1.69810 1.08985 1.31786 1.32509 0.86286 0.80659 0.81270 0.78569 1.18678 1.19936 1.20205 0.92075 0.91672 0.89493 0.91769 0.90823 0.91593 0.89632 0.91537 0.92330 0.88169 0.86956 0.77493 0.76991 0.75745 0.86623 0.88825 0.85777 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.37 37.16 0.31 -2.31 16 2 C 0.12 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 4 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 5 O -0.36 -5.41 9.69 -39.26 -0.38 -5.79 16 6 C 0.44 7.89 6.62 36.01 0.24 8.13 16 7 O -0.48 -10.10 11.90 -18.74 -0.22 -10.32 16 8 C 0.20 3.46 2.12 -69.07 -0.15 3.32 16 9 H 0.13 2.47 7.27 -51.93 -0.38 2.09 16 10 C -0.15 -1.81 5.21 -27.88 -0.15 -1.95 16 11 C 0.51 6.96 7.98 -10.98 -0.09 6.88 16 12 N -0.86 -7.41 8.87 31.22 0.28 -7.13 16 13 O -0.51 -9.82 16.15 5.56 0.09 -9.73 16 14 N -0.69 -14.91 3.68 -54.61 -0.20 -15.11 16 15 C 0.32 8.30 7.46 -155.03 -1.16 7.14 16 16 N -0.53 -13.57 9.11 -11.87 -0.11 -13.68 16 17 C 0.01 0.19 11.17 -17.33 -0.19 -0.01 16 18 C -0.19 -4.80 10.08 -39.50 -0.40 -5.20 16 19 C -0.12 -3.26 8.76 -38.62 -0.34 -3.60 16 20 C 0.04 1.06 5.57 -106.47 -0.59 0.47 16 21 C -0.45 -12.14 8.50 -37.89 -0.32 -12.46 16 22 H 0.07 1.83 6.71 -52.49 -0.35 1.47 16 23 C 0.07 1.91 5.25 -17.32 -0.09 1.82 16 24 N -0.80 -21.53 10.92 55.55 0.61 -20.92 16 25 Si 0.91 19.22 29.58 -169.99 -5.03 14.19 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.58 5.89 -51.93 -0.31 1.27 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.08 1.34 5.89 -51.93 -0.31 1.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.11 1.02 7.99 -51.93 -0.41 0.61 16 40 H 0.40 1.99 8.83 -40.82 -0.36 1.63 16 41 H 0.40 3.22 8.93 -40.82 -0.36 2.85 16 42 H 0.41 8.58 6.85 -40.82 -0.28 8.30 16 43 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.12 3.46 6.34 -52.48 -0.33 3.12 16 46 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -34.83 380.91 -8.07 -42.90 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -6.46 Total: 19.15 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.38 Total: 0.71 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.57 Total: -56.85 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.51 Total: -25.84 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.83 -8.07 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167918371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.562 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds