Wall clock time and date at job start Tue Mar 31 2020 18:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36780 * 119.99694 * 2 1 4 4 H 1.08002 * 120.00209 * 219.95720 * 3 2 1 5 5 C 1.39114 * 120.00366 * 39.95692 * 3 2 1 6 6 N 1.31321 * 119.99839 * 9.08120 * 5 3 2 7 7 Si 1.86794 * 120.00136 * 189.07915 * 5 3 2 8 8 H 1.48503 * 109.46899 * 89.99999 * 7 5 3 9 9 H 1.48503 * 109.47113 * 210.00031 * 7 5 3 10 10 H 1.48496 * 109.47144 * 330.00198 * 7 5 3 11 11 C 1.34773 * 120.00008 * 180.02562 * 2 1 3 12 12 O 1.21568 * 119.99634 * 5.41679 * 11 2 1 13 13 C 1.48003 * 119.99847 * 185.42152 * 11 2 1 14 14 C 1.39415 * 119.73073 * 186.12194 * 13 11 2 15 15 C 1.38538 * 119.05116 * 180.29354 * 14 13 11 16 16 C 1.50700 * 120.75020 * 179.71510 * 15 14 13 17 17 N 1.46507 * 109.47062 * 269.72187 * 16 15 14 18 18 C 1.34772 * 120.00029 * 179.72522 * 17 16 15 19 19 O 1.21520 * 119.99955 * 0.27214 * 18 17 16 20 20 O 1.34632 * 120.00123 * 180.27511 * 18 17 16 21 21 C 1.45203 * 116.99982 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47258 * 60.00151 * 21 20 18 23 23 C 1.53002 * 109.46889 * 180.02562 * 21 20 18 24 24 C 1.53004 * 109.47237 * 299.99933 * 21 20 18 25 25 C 1.38667 * 118.49793 * 359.44237 * 15 14 13 26 26 C 1.38547 * 119.36998 * 0.27896 * 25 15 14 27 27 N 1.31524 * 120.91139 * 0.02562 * 26 25 15 28 28 H 1.09000 * 109.47506 * 264.76023 * 1 2 3 29 29 H 1.09005 * 109.47292 * 24.75512 * 1 2 3 30 30 H 1.09003 * 109.46975 * 144.75575 * 1 2 3 31 31 H 0.96998 * 120.00349 * 180.02562 * 6 5 3 32 32 H 1.07996 * 120.47288 * 0.03111 * 14 13 11 33 33 H 1.09003 * 109.47124 * 149.72676 * 16 15 14 34 34 H 1.09001 * 109.47050 * 29.72121 * 16 15 14 35 35 H 0.96996 * 119.99544 * 0.02562 * 17 16 15 36 36 H 1.09000 * 109.46874 * 59.99760 * 22 21 20 37 37 H 1.08994 * 109.46986 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.46831 * 300.00315 * 22 21 20 39 39 H 1.08999 * 109.46963 * 60.00307 * 23 21 20 40 40 H 1.09002 * 109.47216 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.47073 * 299.99858 * 23 21 20 42 42 H 1.08999 * 109.47038 * 60.00116 * 24 21 20 43 43 H 1.09001 * 109.46856 * 180.02562 * 24 21 20 44 44 H 1.09004 * 109.47040 * 300.00265 * 24 21 20 45 45 H 1.08004 * 120.31609 * 180.24920 * 25 15 14 46 46 H 1.08001 * 119.54116 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.0398 1.2939 -0.6007 5 6 1.6969 2.2487 0.7737 6 7 0.7244 2.0663 1.6371 7 14 2.4734 3.9371 0.5845 8 1 1.7411 4.7050 -0.4545 9 1 2.4022 4.6625 1.8783 10 1 3.8939 3.7860 0.1791 11 6 2.1389 -1.1672 -0.0005 12 8 1.5351 -2.2175 -0.1004 13 6 3.6140 -1.1701 0.1206 14 6 4.3160 -2.3676 -0.0088 15 6 5.6959 -2.3550 0.1132 16 6 6.4923 -3.6281 -0.0134 17 7 6.6377 -4.2465 1.3068 18 6 7.3130 -5.4055 1.4373 19 8 7.8056 -5.9350 0.4607 20 8 7.4419 -5.9767 2.6496 21 6 8.1816 -7.2244 2.7152 22 6 9.6093 -6.9979 2.2137 23 6 8.2214 -7.7182 4.1628 24 6 7.4932 -8.2722 1.8382 25 6 6.3283 -1.1436 0.3487 26 6 5.5681 0.0093 0.4603 27 7 4.2584 -0.0312 0.3464 28 1 -0.3634 -0.0938 1.0233 29 1 -0.3634 0.9333 -0.4303 30 1 -0.3633 -0.8393 -0.5930 31 1 0.4089 2.8083 2.1763 32 1 3.7912 -3.2925 -0.1971 33 1 7.4783 -3.4011 -0.4188 34 1 5.9741 -4.3159 -0.6817 35 1 6.2441 -3.8241 2.0861 36 1 10.0997 -6.2515 2.8384 37 1 10.1644 -7.9346 2.2625 38 1 9.5805 -6.6463 1.1824 39 1 7.2042 -7.8797 4.5197 40 1 8.7763 -8.6551 4.2120 41 1 8.7116 -6.9719 4.7879 42 1 7.4644 -7.9207 0.8069 43 1 8.0483 -9.2090 1.8879 44 1 6.4761 -8.4336 2.1956 45 1 7.4031 -1.0993 0.4448 46 1 6.0578 0.9544 0.6433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196914168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:30 Heat of formation + Delta-G solvation = -64.340852 kcal Electronic energy + Delta-G solvation = -28671.047638 eV Core-core repulsion = 24561.803876 eV Total energy + Delta-G solvation = -4109.243763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90710 -40.00611 -38.08862 -37.47588 -35.27682 -34.80806 -34.21613 -32.13977 -31.45281 -30.84281 -27.66022 -27.60586 -26.94725 -26.55294 -24.96658 -22.88458 -22.76240 -21.79122 -20.29184 -19.35311 -18.44440 -17.58444 -16.78944 -16.60624 -16.19086 -15.76713 -15.52335 -15.27235 -14.83029 -14.65524 -14.47129 -14.25464 -14.10133 -13.97371 -13.64269 -13.17512 -13.00079 -12.84566 -12.75112 -12.38145 -12.34681 -12.13642 -12.10727 -11.74945 -11.65735 -11.53507 -11.50444 -11.23657 -11.20726 -10.91888 -10.62554 -10.56079 -10.35480 -10.24704 -9.40364 -9.32419 -9.20487 -9.00882 -8.66861 -8.36133 -7.50686 -6.37100 -3.96567 1.18508 1.42669 2.23063 2.72984 3.13598 3.21939 3.25733 3.65236 4.07419 4.11405 4.42406 4.47179 4.51759 4.60556 4.62201 4.65880 4.88809 5.10087 5.21111 5.21138 5.28414 5.29149 5.33278 5.43483 5.47525 5.53119 5.60466 5.61617 5.71924 5.73348 5.97637 6.05114 6.05738 6.15233 6.20677 6.31496 6.39020 6.50047 6.68714 6.82984 7.06965 7.18580 7.30279 7.54181 7.85201 8.25679 8.39873 8.53399 9.07861 9.40976 9.84223 10.67038 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.002392 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.630124 B =11703.975746 C =12217.466777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.407 5.407 3 C -0.292 4.292 4 H 0.111 0.889 5 C 0.039 3.961 6 N -0.867 5.867 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.265 1.265 11 C 0.488 3.512 12 O -0.611 6.611 13 C 0.119 3.881 14 C -0.112 4.112 15 C -0.090 4.090 16 C 0.186 3.814 17 N -0.705 5.705 18 C 0.651 3.349 19 O -0.571 6.571 20 O -0.365 6.365 21 C 0.136 3.864 22 C -0.183 4.183 23 C -0.141 4.141 24 C -0.184 4.184 25 C -0.160 4.160 26 C 0.083 3.917 27 N -0.403 5.403 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.270 0.730 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.409 0.591 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.129 0.871 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.465 -11.703 2.331 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.121 5.121 3 C -0.422 4.422 4 H 0.129 0.871 5 C -0.167 4.167 6 N -0.504 5.504 7 Si 0.751 3.249 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.190 1.190 11 C 0.277 3.723 12 O -0.499 6.499 13 C -0.019 4.019 14 C -0.134 4.134 15 C -0.098 4.098 16 C 0.064 3.936 17 N -0.364 5.364 18 C 0.404 3.596 19 O -0.460 6.460 20 O -0.279 6.279 21 C 0.099 3.901 22 C -0.240 4.240 23 C -0.198 4.198 24 C -0.241 4.241 25 C -0.181 4.181 26 C -0.076 4.076 27 N -0.114 5.114 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.244 0.756 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.147 0.853 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.758 -11.632 2.043 18.901 hybrid contribution 0.727 0.482 0.452 0.982 sum 15.484 -11.149 2.495 19.243 Atomic orbital electron populations 1.21409 0.80901 0.99695 1.01176 1.43473 1.05578 1.05057 1.58020 1.19946 1.09992 0.87350 1.24918 0.87148 1.25547 0.96380 1.00524 0.94243 1.69899 1.26837 1.32476 1.21171 0.85969 0.79953 0.81476 0.77548 1.20490 1.21049 1.18953 1.17915 0.85303 0.84222 0.84828 1.90621 1.68664 1.31611 1.58974 1.21478 0.95560 0.88467 0.96430 1.22003 0.92994 1.00013 0.98380 1.19950 0.93697 0.94468 1.01677 1.20105 0.99875 0.90816 0.82767 1.44821 1.57277 1.22510 1.11808 1.18046 0.78423 0.81142 0.81943 1.90895 1.52210 1.64131 1.38812 1.86318 1.71176 1.39289 1.31150 1.22067 0.90870 0.80221 0.96926 1.22514 0.94583 1.02679 1.04244 1.21864 1.03355 1.01409 0.93213 1.22524 1.00724 0.98358 1.02524 1.22115 1.00913 0.93224 1.01848 1.23097 0.90522 0.97848 0.96092 1.68801 1.08232 1.27417 1.06981 0.92469 0.91968 0.94038 0.92034 0.84178 0.90017 0.89921 0.75577 0.92204 0.91208 0.89333 0.91383 0.90180 0.91470 0.89306 0.91208 0.92069 0.85347 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.70 8.80 59.85 0.53 3.22 16 2 N -0.41 -10.53 2.92 -123.22 -0.36 -10.89 16 3 C -0.29 -7.44 7.40 -15.02 -0.11 -7.55 16 4 H 0.11 2.76 6.16 -52.49 -0.32 2.44 16 5 C 0.04 0.98 5.14 -17.45 -0.09 0.89 16 6 N -0.87 -22.89 11.72 55.50 0.65 -22.23 16 7 Si 0.92 19.52 29.56 -169.99 -5.03 14.50 16 8 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 11 C 0.49 12.33 7.61 -12.26 -0.09 12.24 16 12 O -0.61 -16.31 15.98 5.31 0.08 -16.22 16 13 C 0.12 2.56 6.63 -83.01 -0.55 2.01 16 14 C -0.11 -1.98 9.33 -39.03 -0.36 -2.34 16 15 C -0.09 -1.25 5.28 -104.35 -0.55 -1.80 16 16 C 0.19 2.21 5.85 -5.19 -0.03 2.18 16 17 N -0.70 -8.40 5.55 -66.46 -0.37 -8.77 16 18 C 0.65 8.49 8.06 54.05 0.44 8.92 16 19 O -0.57 -8.33 11.88 -19.29 -0.23 -8.56 16 20 O -0.36 -4.39 9.94 -40.30 -0.40 -4.79 16 21 C 0.14 1.32 1.13 -90.61 -0.10 1.22 16 22 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 23 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 24 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 25 C -0.16 -2.11 9.82 -39.31 -0.39 -2.49 16 26 C 0.08 1.33 11.18 -17.57 -0.20 1.13 16 27 N -0.40 -8.34 6.50 -9.81 -0.06 -8.40 16 28 H 0.06 1.44 7.72 -51.93 -0.40 1.04 16 29 H 0.06 1.47 7.69 -51.93 -0.40 1.07 16 30 H 0.04 0.95 7.51 -51.93 -0.39 0.56 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.14 2.48 7.66 -52.49 -0.40 2.07 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.41 4.59 8.57 -40.82 -0.35 4.24 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -31.10 381.88 -7.18 -38.27 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.66 Total: 7.23 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -0.56 Total: 14.13 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.14 Total: -50.31 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.54 Total: -29.58 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.10 -7.18 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196914168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.070 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds