Wall clock time and date at job start Tue Mar 31 2020 18:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36780 * 119.99694 * 2 1 4 4 H 1.08002 * 120.00209 * 219.95720 * 3 2 1 5 5 C 1.39114 * 120.00366 * 39.95692 * 3 2 1 6 6 N 1.31321 * 119.99839 * 9.08120 * 5 3 2 7 7 Si 1.86794 * 120.00136 * 189.07915 * 5 3 2 8 8 H 1.48503 * 109.46899 * 89.99999 * 7 5 3 9 9 H 1.48503 * 109.47113 * 210.00031 * 7 5 3 10 10 H 1.48496 * 109.47144 * 330.00198 * 7 5 3 11 11 C 1.34773 * 120.00008 * 180.02562 * 2 1 3 12 12 O 1.21568 * 119.99634 * 5.41679 * 11 2 1 13 13 C 1.48003 * 119.99847 * 185.42152 * 11 2 1 14 14 C 1.39415 * 119.73073 * 186.12194 * 13 11 2 15 15 C 1.38538 * 119.05116 * 180.29354 * 14 13 11 16 16 C 1.50700 * 120.75020 * 179.71510 * 15 14 13 17 17 N 1.46507 * 109.47062 * 269.72187 * 16 15 14 18 18 C 1.34772 * 120.00029 * 179.72522 * 17 16 15 19 19 O 1.21520 * 119.99955 * 0.27214 * 18 17 16 20 20 O 1.34632 * 120.00123 * 180.27511 * 18 17 16 21 21 C 1.45203 * 116.99982 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47258 * 60.00151 * 21 20 18 23 23 C 1.53002 * 109.46889 * 180.02562 * 21 20 18 24 24 C 1.53004 * 109.47237 * 299.99933 * 21 20 18 25 25 C 1.38667 * 118.49793 * 359.44237 * 15 14 13 26 26 C 1.38547 * 119.36998 * 0.27896 * 25 15 14 27 27 N 1.31524 * 120.91139 * 0.02562 * 26 25 15 28 28 H 1.09000 * 109.47506 * 264.76023 * 1 2 3 29 29 H 1.09005 * 109.47292 * 24.75512 * 1 2 3 30 30 H 1.09003 * 109.46975 * 144.75575 * 1 2 3 31 31 H 0.96998 * 120.00349 * 180.02562 * 6 5 3 32 32 H 1.07996 * 120.47288 * 0.03111 * 14 13 11 33 33 H 1.09003 * 109.47124 * 149.72676 * 16 15 14 34 34 H 1.09001 * 109.47050 * 29.72121 * 16 15 14 35 35 H 0.96996 * 119.99544 * 0.02562 * 17 16 15 36 36 H 1.09000 * 109.46874 * 59.99760 * 22 21 20 37 37 H 1.08994 * 109.46986 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.46831 * 300.00315 * 22 21 20 39 39 H 1.08999 * 109.46963 * 60.00307 * 23 21 20 40 40 H 1.09002 * 109.47216 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.47073 * 299.99858 * 23 21 20 42 42 H 1.08999 * 109.47038 * 60.00116 * 24 21 20 43 43 H 1.09001 * 109.46856 * 180.02562 * 24 21 20 44 44 H 1.09004 * 109.47040 * 300.00265 * 24 21 20 45 45 H 1.08004 * 120.31609 * 180.24920 * 25 15 14 46 46 H 1.08001 * 119.54116 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.0398 1.2939 -0.6007 5 6 1.6969 2.2487 0.7737 6 7 0.7244 2.0663 1.6371 7 14 2.4734 3.9371 0.5845 8 1 1.7411 4.7050 -0.4545 9 1 2.4022 4.6625 1.8783 10 1 3.8939 3.7860 0.1791 11 6 2.1389 -1.1672 -0.0005 12 8 1.5351 -2.2175 -0.1004 13 6 3.6140 -1.1701 0.1206 14 6 4.3160 -2.3676 -0.0088 15 6 5.6959 -2.3550 0.1132 16 6 6.4923 -3.6281 -0.0134 17 7 6.6377 -4.2465 1.3068 18 6 7.3130 -5.4055 1.4373 19 8 7.8056 -5.9350 0.4607 20 8 7.4419 -5.9767 2.6496 21 6 8.1816 -7.2244 2.7152 22 6 9.6093 -6.9979 2.2137 23 6 8.2214 -7.7182 4.1628 24 6 7.4932 -8.2722 1.8382 25 6 6.3283 -1.1436 0.3487 26 6 5.5681 0.0093 0.4603 27 7 4.2584 -0.0312 0.3464 28 1 -0.3634 -0.0938 1.0233 29 1 -0.3634 0.9333 -0.4303 30 1 -0.3633 -0.8393 -0.5930 31 1 0.4089 2.8083 2.1763 32 1 3.7912 -3.2925 -0.1971 33 1 7.4783 -3.4011 -0.4188 34 1 5.9741 -4.3159 -0.6817 35 1 6.2441 -3.8241 2.0861 36 1 10.0997 -6.2515 2.8384 37 1 10.1644 -7.9346 2.2625 38 1 9.5805 -6.6463 1.1824 39 1 7.2042 -7.8797 4.5197 40 1 8.7763 -8.6551 4.2120 41 1 8.7116 -6.9719 4.7879 42 1 7.4644 -7.9207 0.8069 43 1 8.0483 -9.2090 1.8879 44 1 6.4761 -8.4336 2.1956 45 1 7.4031 -1.0993 0.4448 46 1 6.0578 0.9544 0.6433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196914168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:29 Heat of formation + Delta-G solvation = -84.709264 kcal Electronic energy + Delta-G solvation = -28671.930879 eV Core-core repulsion = 24561.803876 eV Total energy + Delta-G solvation = -4110.127003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87202 -41.43734 -39.78988 -38.48261 -36.79168 -36.31973 -35.05161 -33.52428 -33.17335 -32.26800 -28.50655 -28.32994 -28.27788 -27.98133 -26.81328 -24.41867 -23.87386 -22.91971 -21.31018 -20.97916 -19.63796 -19.05618 -18.06843 -17.70578 -17.36168 -17.10745 -16.90167 -16.39339 -16.22075 -16.07560 -15.92274 -15.67992 -15.39712 -15.26542 -14.58646 -14.57535 -14.38079 -14.14864 -13.67125 -13.47351 -13.30251 -13.27402 -13.07976 -13.05060 -12.87891 -12.84314 -12.75601 -12.67733 -12.46281 -12.40386 -12.30630 -12.01508 -11.37127 -11.20164 -11.02475 -10.87518 -10.69353 -10.28994 -10.08632 -9.98027 -9.42405 -8.24294 -5.92995 -0.17250 0.16777 1.27528 1.48611 1.50437 1.63119 1.74695 2.01409 2.36148 2.80130 2.97886 3.19324 3.27256 3.42948 3.67132 3.77617 3.82519 3.88322 3.97441 4.09282 4.17546 4.43880 4.46897 4.60331 4.63731 4.64911 4.75242 4.78902 4.79600 4.84479 4.87086 4.88180 4.90421 5.00258 5.05043 5.16473 5.20838 5.25985 5.31364 5.37434 5.56174 5.60344 5.77290 5.93860 6.33847 6.51545 7.03303 7.22716 7.29836 7.51522 7.92208 8.81521 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.002392 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.630124 B =11703.975746 C =12217.466777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.429 5.429 3 C -0.303 4.303 4 H 0.113 0.887 5 C -0.005 4.005 6 N -0.907 5.907 7 Si 0.989 3.011 8 H -0.276 1.276 9 H -0.287 1.287 10 H -0.250 1.250 11 C 0.478 3.522 12 O -0.638 6.638 13 C 0.082 3.918 14 C -0.111 4.111 15 C -0.073 4.073 16 C 0.193 3.807 17 N -0.701 5.701 18 C 0.649 3.351 19 O -0.588 6.588 20 O -0.372 6.372 21 C 0.123 3.877 22 C -0.178 4.178 23 C -0.137 4.137 24 C -0.181 4.181 25 C -0.121 4.121 26 C 0.076 3.924 27 N -0.437 5.437 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.269 0.731 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.413 0.587 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.178 0.822 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.373 -11.895 2.721 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.143 5.143 3 C -0.432 4.432 4 H 0.130 0.870 5 C -0.207 4.207 6 N -0.546 5.546 7 Si 0.813 3.187 8 H -0.201 1.201 9 H -0.213 1.213 10 H -0.174 1.174 11 C 0.268 3.732 12 O -0.528 6.528 13 C -0.055 4.055 14 C -0.133 4.133 15 C -0.081 4.081 16 C 0.071 3.929 17 N -0.361 5.361 18 C 0.403 3.597 19 O -0.479 6.479 20 O -0.286 6.286 21 C 0.087 3.913 22 C -0.235 4.235 23 C -0.194 4.194 24 C -0.238 4.238 25 C -0.141 4.141 26 C -0.084 4.084 27 N -0.149 5.149 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.196 0.804 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.671 -11.831 2.430 22.237 hybrid contribution -0.298 0.342 0.329 0.561 sum 18.373 -11.489 2.759 21.845 Atomic orbital electron populations 1.21235 0.81140 0.99727 0.99982 1.43706 1.05875 1.05684 1.59068 1.20090 1.10241 0.87378 1.25488 0.86973 1.26375 0.96769 1.03875 0.93660 1.70024 1.28623 1.33405 1.22527 0.84977 0.79765 0.76790 0.77198 1.20134 1.21321 1.17390 1.18655 0.87470 0.83628 0.83404 1.90564 1.70070 1.32424 1.59716 1.20987 0.93707 0.90310 1.00461 1.21958 0.94662 0.98313 0.98326 1.20081 0.92025 0.96012 1.00029 1.20081 1.00457 0.89550 0.82825 1.44756 1.57067 1.22370 1.11910 1.18139 0.78306 0.81194 0.82064 1.90897 1.52987 1.64607 1.39453 1.86331 1.71504 1.40253 1.30555 1.22444 0.90914 0.79352 0.98571 1.22460 0.94499 1.03865 1.02677 1.21896 1.03707 1.02501 0.91309 1.22489 1.01044 0.99385 1.00909 1.22590 1.03049 0.91438 0.97058 1.23646 0.89008 1.00224 0.95516 1.68538 1.10840 1.27552 1.07944 0.94345 0.92012 0.93606 0.92165 0.85045 0.87735 0.90349 0.75123 0.91820 0.89052 0.91681 0.91631 0.87796 0.91142 0.91797 0.88919 0.92422 0.80424 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.26 8.80 127.77 1.12 7.38 16 2 N -0.43 -23.10 2.92 -662.03 -1.93 -25.03 16 3 C -0.30 -15.76 7.40 84.13 0.62 -15.14 16 4 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 5 C -0.01 -0.26 5.14 84.98 0.44 0.17 16 6 N -0.91 -49.44 11.72 21.69 0.25 -49.19 16 7 Si 0.99 39.98 29.56 68.60 2.03 42.01 16 8 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 9 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 11 C 0.48 25.14 7.61 86.83 0.66 25.80 16 12 O -0.64 -35.62 15.98 -3.93 -0.06 -35.68 16 13 C 0.08 3.58 6.63 41.87 0.28 3.85 16 14 C -0.11 -3.85 9.33 22.62 0.21 -3.64 16 15 C -0.07 -1.82 5.28 -19.69 -0.10 -1.93 16 16 C 0.19 4.00 5.85 85.63 0.50 4.50 16 17 N -0.70 -15.09 5.55 -594.60 -3.30 -18.40 16 18 C 0.65 15.87 8.06 129.79 1.05 16.91 16 19 O -0.59 -16.43 11.88 19.78 0.23 -16.19 16 20 O -0.37 -8.38 9.94 -55.41 -0.55 -8.93 16 21 C 0.12 2.17 1.13 -10.79 -0.01 2.16 16 22 C -0.18 -2.88 8.37 71.98 0.60 -2.27 16 23 C -0.14 -1.63 8.85 71.98 0.64 -0.99 16 24 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 25 C -0.12 -2.62 9.82 22.45 0.22 -2.40 16 26 C 0.08 2.16 11.18 84.81 0.95 3.11 16 27 N -0.44 -17.73 6.50 -184.95 -1.20 -18.93 16 28 H 0.04 2.06 7.72 -2.39 -0.02 2.04 16 29 H 0.06 3.07 7.69 -2.38 -0.02 3.05 16 30 H 0.05 2.22 7.51 -2.39 -0.02 2.20 16 31 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.13 4.74 7.66 -2.91 -0.02 4.71 16 33 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.41 8.31 8.57 -92.71 -0.79 7.52 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -71.36 381.88 3.45 -67.90 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.21 Total: 27.55 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 7.77 Total: 34.88 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -6.18 Total: -111.55 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.38 Total: -60.80 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -71.36 3.45 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196914168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.804 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds