Wall clock time and date at job start Tue Mar 31 2020 18:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 H 1.08994 * 109.47337 * 304.99935 * 3 2 1 5 5 C 1.50696 * 109.47233 * 184.99525 * 3 2 1 6 6 H 1.07997 * 120.00467 * 239.99871 * 5 3 2 7 7 C 1.37883 * 119.99667 * 60.00257 * 5 3 2 8 8 N 1.31512 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46969 * 90.00050 * 9 7 5 11 11 H 1.48500 * 109.46878 * 209.99944 * 9 7 5 12 12 H 1.48496 * 109.47285 * 330.00162 * 9 7 5 13 13 N 1.46507 * 109.46923 * 64.99980 * 3 2 1 14 14 C 1.34776 * 119.99673 * 275.00017 * 13 3 2 15 15 O 1.21579 * 120.00555 * 359.97438 * 14 13 3 16 16 C 1.47630 * 119.99740 * 180.02562 * 14 13 3 17 17 C 1.40056 * 120.88159 * 179.97438 * 16 14 13 18 18 N 1.32020 * 118.98627 * 179.72576 * 17 16 14 19 19 C 1.32465 * 120.91617 * 0.27864 * 18 17 16 20 20 O 1.35297 * 119.02142 * 179.97438 * 19 18 17 21 21 C 1.42897 * 116.99859 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54802 * 269.82309 * 21 20 19 23 23 C 1.53101 * 109.15959 * 183.24558 * 22 21 20 24 24 O 1.42903 * 109.48802 * 57.47357 * 23 22 21 25 25 C 1.42902 * 114.09872 * 298.89209 * 24 23 22 26 26 C 1.53094 * 109.41534 * 61.15542 * 25 24 23 27 27 N 1.32468 * 121.96036 * 0.02562 * 19 18 17 28 28 C 1.32020 * 120.90974 * 359.97438 * 27 19 18 29 29 H 1.09006 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47554 * 299.99767 * 1 2 3 31 31 H 1.09000 * 109.47620 * 60.00218 * 1 2 3 32 32 H 1.08992 * 109.47352 * 240.00323 * 2 1 3 33 33 H 1.09006 * 109.46937 * 119.99708 * 2 1 3 34 34 H 0.97001 * 120.00009 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99819 * 94.99807 * 13 3 2 36 36 H 1.08002 * 120.50922 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.54344 * 30.00843 * 21 20 19 38 38 H 1.09004 * 109.52096 * 303.06259 * 22 21 20 39 39 H 1.09001 * 109.51983 * 63.24859 * 22 21 20 40 40 H 1.09010 * 109.40206 * 297.49591 * 23 22 21 41 41 H 1.08992 * 109.48557 * 177.50720 * 23 22 21 42 42 H 1.09008 * 109.48062 * 301.17655 * 25 24 23 43 43 H 1.09001 * 109.48926 * 181.14615 * 25 24 23 44 44 H 1.09002 * 109.51957 * 182.48483 * 26 25 24 45 45 H 1.09002 * 109.57190 * 62.33300 * 26 25 24 46 46 H 1.08006 * 120.50190 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8815 -1.3816 10 1 6.5548 -0.3500 -0.7600 11 1 6.3829 0.9226 -2.8171 12 1 6.5569 2.0740 -0.6900 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6644 1.3670 15 8 -0.3413 2.6326 0.4318 16 6 0.0446 3.3248 2.6282 17 6 -1.2154 3.9202 2.7679 18 7 -1.5276 4.4958 3.9143 19 6 -0.6665 4.5195 4.9206 20 8 -1.0262 5.1203 6.0782 21 6 -0.0645 5.1203 7.1352 22 6 -0.2545 3.8710 8.0010 23 6 0.7254 3.9204 9.1762 24 8 0.5121 5.1188 9.9248 25 6 0.7232 6.3187 9.1780 26 6 -0.2583 6.3668 8.0041 27 7 0.5368 3.9735 4.8268 28 6 0.9266 3.3782 3.7148 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8293 -0.0610 -2.9497 35 1 2.2718 2.1232 1.9978 36 1 -1.9228 3.9044 1.9519 37 1 0.9406 5.1224 6.7136 38 1 -1.2759 3.8431 8.3809 39 1 -0.0631 2.9805 7.4024 40 1 1.7472 3.9059 8.7966 41 1 0.5646 3.0559 9.8203 42 1 1.7449 6.3356 8.7984 43 1 0.5608 7.1820 9.8233 44 1 -0.0695 7.2595 7.4078 45 1 -1.2800 6.3914 8.3832 46 1 1.9090 2.9348 3.6457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199518923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:26 Heat of formation + Delta-G solvation = -71.231624 kcal Electronic energy + Delta-G solvation = -28759.128105 eV Core-core repulsion = 24649.585536 eV Total energy + Delta-G solvation = -4109.542569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53959 -40.06325 -39.00943 -37.98773 -35.22428 -34.15467 -33.24641 -32.58867 -31.66351 -31.59431 -30.47832 -27.16484 -25.78617 -24.87762 -24.10593 -24.02736 -22.98762 -20.97092 -20.72140 -19.65130 -19.12473 -18.03857 -17.85547 -16.70814 -16.58437 -16.19609 -15.93353 -15.39050 -15.27816 -15.18852 -14.82297 -14.53600 -14.29537 -14.17707 -13.83098 -13.74867 -13.36814 -13.01036 -12.75160 -12.66902 -12.14116 -11.96270 -11.80096 -11.61546 -11.58849 -11.31485 -11.15119 -11.06949 -10.99483 -10.89343 -10.77113 -10.39509 -10.27667 -10.16888 -9.72522 -9.39180 -9.29552 -9.13826 -9.11171 -8.58571 -7.97891 -6.19751 -4.29829 0.52642 0.87247 2.17773 3.16350 3.19524 3.27053 3.28381 3.40942 3.68798 3.86485 3.90153 4.18923 4.23918 4.29635 4.33896 4.43397 4.46932 4.67384 4.75303 4.80210 5.01444 5.04597 5.11944 5.18224 5.22791 5.30784 5.33178 5.51044 5.52526 5.61386 5.74493 5.96652 6.32571 6.38411 6.48776 6.58344 6.71027 6.87645 6.96205 7.10907 7.23717 7.31010 7.52297 7.61974 7.80053 7.82769 8.09123 8.48157 8.66164 8.92493 9.37436 10.85497 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002459 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.763048 B =11384.493122 C =12450.201573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.557 3.443 15 O -0.539 6.539 16 C -0.267 4.267 17 C 0.242 3.758 18 N -0.527 5.527 19 C 0.507 3.493 20 O -0.279 6.279 21 C 0.092 3.908 22 C -0.173 4.173 23 C 0.066 3.934 24 O -0.382 6.382 25 C 0.067 3.933 26 C -0.154 4.154 27 N -0.572 5.572 28 C 0.218 3.782 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.191 0.809 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 8.148 19.918 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.340 3.660 15 O -0.418 6.418 16 C -0.275 4.275 17 C 0.075 3.925 18 N -0.252 5.252 19 C 0.206 3.794 20 O -0.181 6.181 21 C 0.035 3.965 22 C -0.211 4.211 23 C -0.010 4.010 24 O -0.300 6.300 25 C -0.010 4.010 26 C -0.192 4.192 27 N -0.301 5.301 28 C 0.051 3.949 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.207 0.793 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.600 8.630 20.270 22.731 hybrid contribution 1.754 -0.569 -0.868 2.038 sum -3.847 8.061 19.401 21.359 Atomic orbital electron populations 1.21848 0.98291 0.98203 1.01204 1.21950 0.92658 0.99628 1.02455 1.18870 0.94391 0.89247 0.80537 0.92946 1.21194 0.90517 1.39375 1.06456 0.92041 1.24876 0.98654 0.94711 0.95331 1.69883 1.35205 1.37334 1.09327 0.86452 0.84764 0.78464 0.77461 1.20515 1.21041 1.19848 1.46461 1.14008 1.55383 1.18774 1.17547 0.83275 0.79327 0.85836 1.90777 1.51421 1.60129 1.39460 1.21994 0.98680 1.08097 0.98730 1.23403 0.93236 0.83722 0.92160 1.67726 1.34541 1.22713 1.00211 1.20871 0.85015 0.86844 0.86690 1.86114 1.42733 1.70368 1.18838 1.22522 0.93221 0.95923 0.84827 1.22679 1.02083 0.98552 0.97800 1.22560 0.97678 0.87927 0.92881 1.87954 1.90598 1.13757 1.37701 1.22572 0.97448 0.88246 0.92755 1.22369 1.02596 0.97202 0.97050 1.67972 1.17272 1.16323 1.28502 1.23267 0.98550 0.87657 0.85406 0.95741 0.94406 0.93008 0.88113 0.94951 0.92457 0.78084 0.79272 0.88477 0.90088 0.89919 0.92452 0.88112 0.92554 0.87840 0.89725 0.89652 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.22 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.70 11.29 55.43 0.63 -23.07 16 9 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.70 -13.17 4.98 -55.94 -0.28 -13.45 16 14 C 0.56 10.13 6.34 -12.43 -0.08 10.05 16 15 O -0.54 -11.49 13.57 5.30 0.07 -11.42 16 16 C -0.27 -3.91 5.90 -104.70 -0.62 -4.52 16 17 C 0.24 3.43 10.87 -16.79 -0.18 3.24 16 18 N -0.53 -7.75 10.45 -14.39 -0.15 -7.90 16 19 C 0.51 7.05 8.45 -91.00 -0.77 6.28 16 20 O -0.28 -3.55 9.84 -17.58 -0.17 -3.72 16 21 C 0.09 0.88 2.44 -26.55 -0.06 0.82 16 22 C -0.17 -1.51 5.77 -26.59 -0.15 -1.66 16 23 C 0.07 0.49 6.84 37.21 0.25 0.74 16 24 O -0.38 -3.29 10.77 -35.23 -0.38 -3.67 16 25 C 0.07 0.44 6.84 37.21 0.25 0.69 16 26 C -0.15 -1.17 5.79 -26.59 -0.15 -1.32 16 27 N -0.57 -7.31 8.62 -14.39 -0.12 -7.44 16 28 C 0.22 2.74 10.81 -16.79 -0.18 2.56 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 31 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.39 6.12 6.66 -40.82 -0.27 5.84 16 36 H 0.19 2.44 7.74 -52.49 -0.41 2.04 16 37 H 0.10 0.95 6.95 -51.93 -0.36 0.59 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.18 1.77 6.53 -52.48 -0.34 1.43 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -30.06 373.03 -8.43 -38.49 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.55 Total: 6.39 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.07 Total: 5.39 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.07 Total: -51.87 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.48 Total: -18.81 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.06 -8.43 -38.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199518923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.743 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds