Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 H 1.08994 * 109.47337 * 304.99935 * 3 2 1 5 5 C 1.50696 * 109.47233 * 184.99525 * 3 2 1 6 6 H 1.07997 * 120.00467 * 239.99871 * 5 3 2 7 7 C 1.37883 * 119.99667 * 60.00257 * 5 3 2 8 8 N 1.31512 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46969 * 90.00050 * 9 7 5 11 11 H 1.48500 * 109.46878 * 209.99944 * 9 7 5 12 12 H 1.48496 * 109.47285 * 330.00162 * 9 7 5 13 13 N 1.46507 * 109.46923 * 64.99980 * 3 2 1 14 14 C 1.34776 * 119.99673 * 275.00017 * 13 3 2 15 15 O 1.21579 * 120.00555 * 359.97438 * 14 13 3 16 16 C 1.47630 * 119.99740 * 180.02562 * 14 13 3 17 17 C 1.40056 * 120.88159 * 179.97438 * 16 14 13 18 18 N 1.32020 * 118.98627 * 179.72576 * 17 16 14 19 19 C 1.32465 * 120.91617 * 0.27864 * 18 17 16 20 20 O 1.35297 * 119.02142 * 179.97438 * 19 18 17 21 21 C 1.42897 * 116.99859 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54802 * 269.82309 * 21 20 19 23 23 C 1.53101 * 109.15959 * 183.24558 * 22 21 20 24 24 O 1.42903 * 109.48802 * 57.47357 * 23 22 21 25 25 C 1.42902 * 114.09872 * 298.89209 * 24 23 22 26 26 C 1.53094 * 109.41534 * 61.15542 * 25 24 23 27 27 N 1.32468 * 121.96036 * 0.02562 * 19 18 17 28 28 C 1.32020 * 120.90974 * 359.97438 * 27 19 18 29 29 H 1.09006 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47554 * 299.99767 * 1 2 3 31 31 H 1.09000 * 109.47620 * 60.00218 * 1 2 3 32 32 H 1.08992 * 109.47352 * 240.00323 * 2 1 3 33 33 H 1.09006 * 109.46937 * 119.99708 * 2 1 3 34 34 H 0.97001 * 120.00009 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99819 * 94.99807 * 13 3 2 36 36 H 1.08002 * 120.50922 * 0.02562 * 17 16 14 37 37 H 1.08998 * 109.54344 * 30.00843 * 21 20 19 38 38 H 1.09004 * 109.52096 * 303.06259 * 22 21 20 39 39 H 1.09001 * 109.51983 * 63.24859 * 22 21 20 40 40 H 1.09010 * 109.40206 * 297.49591 * 23 22 21 41 41 H 1.08992 * 109.48557 * 177.50720 * 23 22 21 42 42 H 1.09008 * 109.48062 * 301.17655 * 25 24 23 43 43 H 1.09001 * 109.48926 * 181.14615 * 25 24 23 44 44 H 1.09002 * 109.51957 * 182.48483 * 26 25 24 45 45 H 1.09002 * 109.57190 * 62.33300 * 26 25 24 46 46 H 1.08006 * 120.50190 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8815 -1.3816 10 1 6.5548 -0.3500 -0.7600 11 1 6.3829 0.9226 -2.8171 12 1 6.5569 2.0740 -0.6900 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6644 1.3670 15 8 -0.3413 2.6326 0.4318 16 6 0.0446 3.3248 2.6282 17 6 -1.2154 3.9202 2.7679 18 7 -1.5276 4.4958 3.9143 19 6 -0.6665 4.5195 4.9206 20 8 -1.0262 5.1203 6.0782 21 6 -0.0645 5.1203 7.1352 22 6 -0.2545 3.8710 8.0010 23 6 0.7254 3.9204 9.1762 24 8 0.5121 5.1188 9.9248 25 6 0.7232 6.3187 9.1780 26 6 -0.2583 6.3668 8.0041 27 7 0.5368 3.9735 4.8268 28 6 0.9266 3.3782 3.7148 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8293 -0.0610 -2.9497 35 1 2.2718 2.1232 1.9978 36 1 -1.9228 3.9044 1.9519 37 1 0.9406 5.1224 6.7136 38 1 -1.2759 3.8431 8.3809 39 1 -0.0631 2.9805 7.4024 40 1 1.7472 3.9059 8.7966 41 1 0.5646 3.0559 9.8203 42 1 1.7449 6.3356 8.7984 43 1 0.5608 7.1820 9.8233 44 1 -0.0695 7.2595 7.4078 45 1 -1.2800 6.3914 8.3832 46 1 1.9090 2.9348 3.6457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199518923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = -93.298814 kcal Electronic energy + Delta-G solvation = -28760.085010 eV Core-core repulsion = 24649.585536 eV Total energy + Delta-G solvation = -4110.499474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.60676 -41.00012 -40.26934 -38.91260 -36.95792 -35.27641 -34.31898 -34.01197 -33.16345 -32.19735 -31.89389 -28.95839 -26.74582 -25.94926 -25.27749 -24.65157 -24.56903 -22.40193 -21.51620 -21.31709 -20.12015 -19.48320 -19.03123 -17.76533 -17.50634 -17.29624 -17.01279 -16.89803 -16.35318 -16.19064 -16.16620 -15.84386 -15.32861 -15.19873 -14.91925 -14.66628 -14.59190 -14.49841 -13.97309 -13.63772 -13.45304 -13.29448 -13.19470 -13.03605 -12.89139 -12.64738 -12.40610 -12.35947 -12.20006 -12.14717 -12.04551 -11.68024 -11.55887 -11.44211 -11.03147 -10.84637 -10.76607 -10.50630 -10.43926 -10.24677 -9.65132 -8.13596 -6.30301 -0.61211 -0.18352 1.23592 1.47490 1.48752 1.58095 1.86695 2.30409 2.52440 2.66806 2.71117 2.90006 3.16820 3.27715 3.39835 3.56816 3.59765 3.72135 3.87731 3.95579 3.99693 4.20615 4.28919 4.44484 4.53569 4.57477 4.60270 4.60877 4.69298 4.75579 4.78912 4.85963 4.95638 4.97748 5.09679 5.10773 5.30102 5.45714 5.46039 5.55898 5.62398 5.81542 5.87505 5.92246 6.17067 6.19299 6.74543 6.77124 6.90570 7.33517 7.49532 8.91581 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.002459 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.763048 B =11384.493122 C =12450.201573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.695 5.695 14 C 0.561 3.439 15 O -0.574 6.574 16 C -0.277 4.277 17 C 0.246 3.754 18 N -0.545 5.545 19 C 0.506 3.494 20 O -0.289 6.289 21 C 0.084 3.916 22 C -0.168 4.168 23 C 0.068 3.932 24 O -0.398 6.398 25 C 0.066 3.934 26 C -0.150 4.150 27 N -0.564 5.564 28 C 0.234 3.766 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.196 0.804 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 8.648 22.328 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.343 5.343 14 C 0.347 3.653 15 O -0.456 6.456 16 C -0.285 4.285 17 C 0.080 3.920 18 N -0.270 5.270 19 C 0.205 3.795 20 O -0.190 6.190 21 C 0.028 3.972 22 C -0.206 4.206 23 C -0.009 4.009 24 O -0.317 6.317 25 C -0.011 4.011 26 C -0.188 4.188 27 N -0.294 5.294 28 C 0.067 3.933 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.213 0.787 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.140 0.860 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.212 9.154 22.743 24.875 hybrid contribution 1.263 -0.658 -1.542 2.099 sum -2.949 8.496 21.202 23.030 Atomic orbital electron populations 1.21694 0.97001 0.99169 1.00364 1.21804 0.93725 0.99095 1.01492 1.18432 0.93743 0.89192 0.81002 0.97759 1.21567 0.91307 1.38855 1.06708 0.90678 1.25715 1.02962 0.94496 0.95135 1.70038 1.36956 1.38334 1.09877 0.85425 0.79538 0.78853 0.77000 1.19817 1.21649 1.18811 1.46138 1.14841 1.55448 1.17916 1.17889 0.82392 0.78485 0.86508 1.90764 1.52352 1.61332 1.41135 1.21577 0.99625 1.09584 0.97757 1.23496 0.93218 0.83054 0.92241 1.67761 1.35151 1.23533 1.00589 1.21105 0.85137 0.86339 0.86878 1.86133 1.43994 1.69895 1.18953 1.22835 0.92618 0.97407 0.84325 1.22638 1.02144 0.97788 0.98067 1.22627 0.97649 0.88143 0.92452 1.87939 1.90733 1.14527 1.38487 1.22734 0.97627 0.88208 0.92502 1.22388 1.02717 0.96496 0.97156 1.68110 1.16718 1.16334 1.28191 1.23662 0.98986 0.86291 0.84354 0.93770 0.93750 0.95273 0.90945 0.93850 0.92666 0.76081 0.78739 0.88412 0.90853 0.90591 0.91494 0.86947 0.91436 0.86025 0.88929 0.90227 0.77744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.66 5.45 30.60 0.17 -5.49 16 3 C 0.28 13.30 2.24 44.24 0.10 13.39 16 4 H 0.00 0.26 7.58 -2.39 -0.02 0.24 16 5 C -0.55 -26.96 8.73 25.60 0.22 -26.73 16 6 H 0.08 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -50.23 11.29 21.45 0.24 -49.99 16 9 Si 0.97 40.20 29.54 68.60 2.03 42.23 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 N -0.69 -25.66 4.98 -449.17 -2.24 -27.90 16 14 C 0.56 20.24 6.34 86.72 0.55 20.79 16 15 O -0.57 -24.97 13.57 -3.96 -0.05 -25.03 16 16 C -0.28 -7.78 5.90 -19.92 -0.12 -7.90 16 17 C 0.25 6.82 10.87 85.11 0.93 7.75 16 18 N -0.54 -15.53 10.45 -312.41 -3.26 -18.80 16 19 C 0.51 13.36 8.45 180.48 1.53 14.89 16 20 O -0.29 -6.97 9.84 -85.83 -0.84 -7.82 16 21 C 0.08 1.48 2.44 30.71 0.08 1.56 16 22 C -0.17 -2.68 5.77 30.69 0.18 -2.50 16 23 C 0.07 0.86 6.84 72.02 0.49 1.36 16 24 O -0.40 -6.02 10.77 -148.98 -1.60 -7.63 16 25 C 0.07 0.70 6.84 72.01 0.49 1.20 16 26 C -0.15 -1.99 5.79 30.69 0.18 -1.82 16 27 N -0.56 -13.23 8.62 -312.41 -2.69 -15.92 16 28 C 0.23 5.33 10.81 85.11 0.92 6.25 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 31 H 0.03 1.33 7.84 -2.39 -0.02 1.32 16 32 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 33 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.40 11.95 6.66 -92.71 -0.62 11.33 16 36 H 0.20 5.03 7.74 -2.91 -0.02 5.01 16 37 H 0.10 1.71 6.95 -2.39 -0.02 1.70 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.21 3.40 6.53 -2.91 -0.02 3.38 16 Total: -1.00 -65.33 373.03 -1.27 -66.60 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.39 Total: 24.89 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.77 Total: 19.37 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -7.95 Total: -112.61 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -2.50 Total: -40.47 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -65.33 -1.27 -66.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199518923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.701 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds