Wall clock time and date at job start Tue Mar 31 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.53003 * 109.46921 * 239.99946 * 2 1 3 5 5 N 1.46501 * 109.47105 * 120.00106 * 2 1 3 6 6 C 1.34770 * 120.00345 * 59.99937 * 5 2 1 7 7 O 1.21502 * 119.99734 * 359.97438 * 6 5 2 8 8 C 1.48325 * 120.00340 * 179.97438 * 6 5 2 9 9 N 1.31517 * 127.17856 * 359.96010 * 8 6 5 10 10 O 1.21404 * 111.52731 * 180.02562 * 9 8 6 11 11 C 1.33292 * 111.62405 * 0.08898 * 10 9 8 12 12 C 1.35381 * 106.48397 * 359.84120 * 11 10 9 13 13 C 1.50222 * 124.65678 * 180.16658 * 12 11 10 14 14 N 1.47627 * 107.03931 * 349.16884 * 13 12 11 15 15 C 1.34773 * 120.84345 * 223.66296 * 14 13 12 16 16 O 1.21282 * 120.00561 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99843 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47266 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99988 * 0.02562 * 18 17 15 20 20 C 1.37885 * 120.00047 * 180.02562 * 18 17 15 21 21 N 1.31518 * 119.99792 * 359.72305 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47021 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47081 * 119.99727 * 22 20 18 25 25 H 1.48501 * 109.47213 * 240.00099 * 22 20 18 26 26 C 1.47048 * 118.30452 * 43.93113 * 14 13 12 27 27 C 1.50568 * 129.35582 * 179.79410 * 11 10 9 28 28 H 1.09004 * 109.46700 * 299.99818 * 1 2 3 29 29 H 1.08995 * 109.47260 * 59.99580 * 1 2 3 30 30 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47023 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47182 * 299.99975 * 3 2 1 33 33 H 1.08995 * 109.47260 * 60.00308 * 3 2 1 34 34 H 1.08996 * 109.46826 * 299.99787 * 4 2 1 35 35 H 1.08995 * 109.46767 * 60.00172 * 4 2 1 36 36 H 1.08994 * 109.46742 * 180.02562 * 4 2 1 37 37 H 0.97002 * 119.99985 * 239.99585 * 5 2 1 38 38 H 1.08998 * 109.94222 * 229.78186 * 13 12 11 39 39 H 1.09007 * 109.93546 * 108.54462 * 13 12 11 40 40 H 1.09004 * 109.47205 * 60.00006 * 17 15 14 41 41 H 1.08997 * 109.47395 * 300.00498 * 17 15 14 42 42 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.48685 * 55.60410 * 26 14 13 44 44 H 1.09003 * 109.48435 * 175.65164 * 26 14 13 45 45 H 1.08995 * 109.59025 * 282.00831 * 27 11 10 46 46 H 1.09001 * 109.59101 * 42.29900 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 0.9939 -2.5713 0.6099 8 6 2.1877 -2.6803 2.6203 9 7 2.9476 -2.1821 3.5710 10 8 3.1834 -3.0064 4.4307 11 6 2.6057 -4.1768 4.1606 12 6 1.9419 -4.0169 2.9916 13 6 1.1409 -5.0897 2.3104 14 7 1.4415 -6.3590 3.0018 15 6 1.6684 -7.4892 2.3036 16 8 1.6264 -7.4722 1.0916 17 6 1.9742 -8.7743 3.0289 18 6 2.1852 -9.8792 2.0260 19 1 2.1062 -9.6715 0.9692 20 6 2.4791 -11.1553 2.4578 21 7 2.5807 -11.4070 3.7447 22 14 2.7414 -12.5247 1.2148 23 1 2.5791 -11.9841 -0.1589 24 1 4.1102 -13.0791 1.3705 25 1 1.7428 -13.5995 1.4443 26 6 1.4813 -6.3598 4.4717 27 6 2.6385 -5.4614 4.9453 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 2.5761 -0.2192 1.8347 38 1 1.4297 -5.1601 1.2617 39 1 0.0769 -4.8662 2.3898 40 1 1.1395 -9.0308 3.6813 41 1 2.8770 -8.6482 3.6266 42 1 2.7871 -12.3048 4.0484 43 1 0.5379 -5.9772 4.8612 44 1 1.6372 -7.3772 4.8306 45 1 3.5891 -5.9678 4.7778 46 1 2.5223 -5.2441 6.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024855.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:52 Heat of formation + Delta-G solvation = -10.776573 kcal Electronic energy + Delta-G solvation = -29334.330645 eV Core-core repulsion = 25227.409603 eV Total energy + Delta-G solvation = -4106.921041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.20500 -40.32786 -39.30728 -36.92454 -36.44425 -34.23154 -33.02022 -32.43837 -32.10957 -30.58157 -28.96936 -27.74993 -27.51856 -26.47101 -24.85773 -23.86941 -23.41095 -21.34681 -20.93199 -19.78377 -18.71739 -18.00836 -17.39021 -16.84486 -16.56752 -16.13804 -15.54538 -15.39639 -15.21417 -15.18623 -14.59720 -14.40095 -14.34491 -13.91527 -13.80367 -13.49037 -13.11636 -12.89323 -12.80085 -12.64448 -12.45172 -12.41978 -12.20202 -11.93658 -11.79055 -11.53133 -11.50864 -11.47158 -11.37058 -11.21260 -10.76092 -10.67877 -10.42798 -10.12889 -9.97865 -9.42232 -9.23995 -9.20011 -8.71740 -8.47567 -8.34408 -6.09360 -4.08298 0.91749 1.54552 2.59626 2.76438 2.98082 3.32530 3.33556 3.40182 3.50413 3.59421 3.76052 4.31821 4.46492 4.47460 4.56673 4.70829 4.71443 4.80242 4.96782 5.15446 5.16638 5.24620 5.28452 5.29683 5.40868 5.41956 5.46293 5.51117 5.57131 5.65919 5.67417 5.68735 5.73911 5.91905 5.97237 6.01614 6.10477 6.23459 6.26108 6.82947 7.09612 7.14149 7.24919 7.76057 7.86030 7.92522 7.94444 8.30689 9.02747 9.11013 9.57116 11.02985 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.002725 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.314870 B =10271.840534 C =11416.687625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.167 4.167 5 N -0.711 5.711 6 C 0.604 3.396 7 O -0.506 6.506 8 C -0.012 4.012 9 N -0.343 5.343 10 O 0.125 5.875 11 C -0.017 4.017 12 C -0.168 4.168 13 C 0.191 3.809 14 N -0.636 5.636 15 C 0.520 3.480 16 O -0.535 6.535 17 C 0.008 3.992 18 C -0.508 4.508 19 H 0.076 0.924 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.113 3.887 27 C -0.055 4.055 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.405 0.595 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.105 0.895 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 24.523 2.347 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.084 3.916 3 C -0.212 4.212 4 C -0.225 4.225 5 N -0.365 5.365 6 C 0.388 3.612 7 O -0.379 6.379 8 C -0.170 4.170 9 N -0.047 5.047 10 O 0.053 5.947 11 C -0.082 4.082 12 C -0.174 4.174 13 C 0.068 3.932 14 N -0.373 5.373 15 C 0.312 3.688 16 O -0.409 6.409 17 C -0.031 4.031 18 C -0.547 4.547 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.011 4.011 27 C -0.094 4.094 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.240 0.760 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.123 0.877 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.182 25.163 1.303 25.224 hybrid contribution 0.202 -0.895 -0.295 0.963 sum -0.980 24.268 1.008 24.309 Atomic orbital electron populations 1.22246 0.93871 1.04342 1.01873 1.20426 0.94696 0.91807 0.84714 1.22088 1.01747 0.94225 1.03173 1.22257 1.01127 1.03023 0.96073 1.46016 1.53565 1.11309 1.25571 1.16816 0.79960 0.81419 0.83027 1.90784 1.36637 1.65987 1.44492 1.22866 1.02106 0.94177 0.97896 1.74483 1.15951 1.14547 0.99725 1.84659 1.55202 1.16649 1.38220 1.24128 0.97078 0.89640 0.97339 1.21022 1.04431 0.95018 0.96954 1.19709 0.96767 0.79115 0.97588 1.48689 1.73556 1.08826 1.06210 1.22135 0.73492 0.84925 0.88269 1.90563 1.50301 1.85214 1.14855 1.19275 0.98738 0.87928 0.97142 1.21219 1.47213 0.92242 0.93981 0.90631 1.24989 0.95284 0.98810 0.95438 1.69951 1.49486 1.21283 1.13324 0.86387 0.77621 0.81452 0.81770 1.19457 1.21007 1.20984 1.21835 0.96670 1.01784 0.80833 1.20899 1.02668 0.86833 0.99036 0.92665 0.91570 0.90085 0.91819 0.90544 0.91856 0.90017 0.91558 0.92581 0.76044 0.87128 0.90092 0.93243 0.93298 0.92929 0.90838 0.86495 0.87732 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.40 37.16 0.31 -1.19 16 2 C 0.17 1.48 1.06 -131.82 -0.14 1.34 16 3 C -0.15 -0.92 8.59 37.16 0.32 -0.60 16 4 C -0.17 -1.62 8.40 37.16 0.31 -1.31 16 5 N -0.71 -7.29 5.10 -48.39 -0.25 -7.54 16 6 C 0.60 8.18 7.27 -12.11 -0.09 8.10 16 7 O -0.51 -8.04 12.51 5.36 0.07 -7.97 16 8 C -0.01 -0.17 7.19 -82.85 -0.60 -0.77 16 9 N -0.34 -4.47 11.89 33.28 0.40 -4.08 16 10 O 0.12 1.56 11.18 18.95 0.21 1.77 16 11 C -0.02 -0.22 7.41 -35.39 -0.26 -0.48 16 12 C -0.17 -2.48 6.14 -104.87 -0.64 -3.12 16 13 C 0.19 3.17 6.05 -4.81 -0.03 3.15 16 14 N -0.64 -11.07 2.95 -173.37 -0.51 -11.58 16 15 C 0.52 11.71 7.70 -10.99 -0.08 11.63 16 16 O -0.53 -14.08 14.99 5.56 0.08 -14.00 16 17 C 0.01 0.20 3.81 -29.04 -0.11 0.09 16 18 C -0.51 -14.45 8.92 -34.44 -0.31 -14.76 16 19 H 0.08 2.28 6.75 -52.49 -0.35 1.92 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 22 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 C 0.11 1.44 6.31 -3.24 -0.02 1.42 16 27 C -0.06 -0.58 6.48 -27.44 -0.18 -0.76 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 1.04 6.17 -51.93 -0.32 0.72 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.53 8.25 -40.82 -0.34 3.19 16 38 H 0.11 2.15 7.17 -51.93 -0.37 1.77 16 39 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 40 H 0.05 1.19 7.74 -51.93 -0.40 0.79 16 41 H 0.05 1.17 7.92 -51.93 -0.41 0.76 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.12 1.54 5.94 -51.93 -0.31 1.23 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -33.59 375.90 -6.84 -40.44 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.61 Total: 1.06 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.61 Total: 4.19 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.37 Total: -48.00 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.36 Total: -20.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.59 -6.84 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024855.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.659 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds