Wall clock time and date at job start Tue Mar 31 2020 18:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47030 * 2 1 4 4 C 1.53002 * 109.46944 * 240.00145 * 2 1 3 5 5 C 1.52996 * 109.47216 * 120.00038 * 2 1 3 6 6 C 1.50700 * 109.47220 * 59.99721 * 5 2 1 7 7 O 1.21291 * 119.99963 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00244 * 180.02562 * 6 5 2 9 9 N 1.40100 * 119.99889 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99827 * 179.97438 * 9 8 6 11 11 O 1.21591 * 120.00106 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00269 * 0.02562 * 10 9 8 13 13 C 1.40022 * 120.00214 * 175.46868 * 12 10 9 14 14 C 1.38916 * 119.99985 * 215.13113 * 13 12 10 15 15 C 1.38013 * 119.99678 * 180.02562 * 14 13 12 16 16 C 1.38896 * 120.00180 * 0.02562 * 15 14 13 17 17 O 1.35784 * 120.00021 * 179.97438 * 16 15 14 18 18 C 1.34820 * 116.99802 * 5.35185 * 17 16 15 19 19 H 1.07994 * 119.99840 * 354.96883 * 18 17 16 20 20 C 1.38631 * 119.99903 * 174.95976 * 18 17 16 21 21 N 1.31579 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47245 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47010 * 120.00421 * 22 20 18 25 25 H 1.48509 * 109.46977 * 240.00199 * 22 20 18 26 26 C 1.38903 * 120.00374 * 0.23239 * 16 15 14 27 27 C 1.38013 * 119.99940 * 359.49008 * 26 16 15 28 28 H 1.09000 * 109.47211 * 300.00391 * 1 2 3 29 29 H 1.09005 * 109.47220 * 59.99698 * 1 2 3 30 30 H 1.08995 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47161 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47592 * 299.99746 * 3 2 1 33 33 H 1.09006 * 109.47320 * 60.00187 * 3 2 1 34 34 H 1.08994 * 109.46999 * 299.99545 * 4 2 1 35 35 H 1.08996 * 109.46887 * 60.00148 * 4 2 1 36 36 H 1.09005 * 109.46827 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47351 * 300.00223 * 5 2 1 38 38 H 1.08993 * 109.47534 * 179.97438 * 5 2 1 39 39 H 0.96998 * 120.00208 * 0.02562 * 8 6 5 40 40 H 0.97003 * 120.00408 * 359.97438 * 9 8 6 41 41 H 0.97006 * 119.99526 * 355.46927 * 12 10 9 42 42 H 1.07999 * 120.00365 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.99654 * 180.02562 * 15 14 13 44 44 H 0.97002 * 119.99274 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.99881 * 179.71880 * 26 16 15 46 46 H 1.08000 * 120.00293 * 180.24986 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5376 -2.1420 1.2492 7 8 0.8406 -2.5389 0.3394 8 7 1.8628 -2.9718 2.2603 9 7 1.3962 -4.2928 2.2600 10 6 1.7218 -5.1227 3.2708 11 8 1.3164 -6.2691 3.2709 12 7 2.4958 -4.6817 4.2822 13 6 2.7560 -5.5129 5.3785 14 6 2.8711 -4.9682 6.6512 15 6 3.1281 -5.7874 7.7318 16 6 3.2721 -7.1564 7.5466 17 8 3.5255 -7.9624 8.6096 18 6 3.5152 -7.3880 9.8293 19 1 3.3925 -6.3190 9.9217 20 6 3.6620 -8.1696 10.9648 21 7 3.8118 -9.4720 10.8521 22 14 3.6470 -7.3739 12.6547 23 1 3.4660 -5.9071 12.5096 24 1 2.5292 -7.9343 13.4558 25 1 4.9346 -7.6477 13.3422 26 6 3.1624 -7.7005 6.2733 27 6 2.8997 -6.8821 5.1935 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6766 -0.2075 2.1392 38 1 3.1299 -0.7217 1.2490 39 1 2.4199 -2.6544 2.9882 40 1 0.8387 -4.6102 1.5323 41 1 2.8726 -3.7884 4.2505 42 1 2.7603 -3.9036 6.7951 43 1 3.2171 -5.3640 8.7213 44 1 3.9148 -10.0188 11.6466 45 1 3.2789 -8.7644 6.1288 46 1 2.8104 -7.3055 4.2040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325339621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:00 Heat of formation + Delta-G solvation = -27.903360 kcal Electronic energy + Delta-G solvation = -27826.111766 eV Core-core repulsion = 23718.448051 eV Total energy + Delta-G solvation = -4107.663715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07971 -40.15980 -38.82618 -37.31922 -36.59314 -35.75314 -33.95551 -32.22828 -31.72466 -30.26422 -28.47272 -27.70524 -27.57834 -27.53593 -25.38750 -22.60272 -22.26236 -21.90968 -20.61439 -19.73195 -18.88211 -18.16147 -17.93920 -17.21800 -16.66641 -16.19781 -15.83053 -15.37991 -15.23539 -14.81778 -14.73408 -14.71817 -14.59515 -14.26306 -13.60899 -13.57962 -13.29789 -12.88458 -12.82877 -12.59289 -12.54294 -12.22310 -12.08150 -11.89938 -11.63135 -11.61491 -11.55575 -11.26734 -11.22300 -11.08412 -11.06225 -10.81751 -10.49956 -10.30863 -9.99043 -9.77205 -9.30586 -8.79561 -8.61932 -8.25385 -6.99343 -6.47183 -4.05457 1.51940 2.00602 2.12383 2.20420 2.87290 3.05800 3.11368 3.14687 3.17397 3.92221 3.94354 4.16879 4.36269 4.51616 4.63571 4.70347 4.97567 5.02239 5.04702 5.06634 5.24504 5.29937 5.36488 5.47602 5.50664 5.56736 5.69320 5.70843 5.72498 5.81939 5.97477 6.04840 6.08616 6.10804 6.15312 6.20775 6.45049 6.77029 6.82245 6.95833 7.00578 7.13619 7.18844 7.37774 7.50644 7.73229 7.97001 7.98874 8.39071 8.98093 9.68061 10.70697 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.001838 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.313031 B =15229.197006 C =16004.876876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.156 4.156 5 C -0.125 4.125 6 C 0.515 3.485 7 O -0.524 6.524 8 N -0.531 5.531 9 N -0.535 5.535 10 C 0.708 3.292 11 O -0.555 6.555 12 N -0.670 5.670 13 C 0.045 3.955 14 C -0.088 4.088 15 C -0.220 4.220 16 C 0.148 3.852 17 O -0.176 6.176 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.178 4.178 27 C -0.066 4.066 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.419 0.581 40 H 0.442 0.558 41 H 0.392 0.608 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.270 0.730 45 H 0.122 0.878 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 21.933 -18.254 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.213 4.213 5 C -0.166 4.166 6 C 0.302 3.698 7 O -0.399 6.399 8 N -0.282 5.282 9 N -0.293 5.293 10 C 0.408 3.592 11 O -0.427 6.427 12 N -0.319 5.319 13 C -0.047 4.047 14 C -0.109 4.109 15 C -0.240 4.240 16 C 0.094 3.906 17 O -0.079 6.079 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.197 4.197 27 C -0.086 4.086 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.260 0.740 40 H 0.288 0.712 41 H 0.226 0.774 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.080 0.920 45 H 0.140 0.860 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.163 20.350 -18.593 27.649 hybrid contribution 0.248 1.085 1.001 1.497 sum -1.915 21.434 -17.592 27.795 Atomic orbital electron populations 1.22129 0.93878 1.04146 1.01125 1.20283 0.96548 0.94622 0.93635 1.21902 1.00992 0.94977 1.02151 1.22129 1.00138 1.02781 0.96216 1.21781 1.02890 0.90502 1.01411 1.21021 0.80676 0.87348 0.80722 1.90637 1.37592 1.76752 1.34891 1.45101 1.53880 1.02378 1.26883 1.44692 1.57021 1.00090 1.27542 1.15767 0.79758 0.84130 0.79582 1.91049 1.59119 1.15485 1.77009 1.42269 1.51779 1.17975 1.19919 1.17004 1.12455 0.90240 0.85041 1.20430 1.01341 0.98664 0.90449 1.20956 1.10564 0.93337 0.99103 1.19427 0.92466 0.89778 0.88948 1.83998 1.75925 1.34999 1.12949 1.21363 1.51974 0.93454 0.80022 0.88981 1.25303 0.96576 0.95412 0.99300 1.70061 1.45106 1.04124 1.30221 0.85640 0.78266 0.78963 0.80489 1.19122 1.20142 1.20159 1.20159 1.09544 0.99948 0.90093 1.20764 0.97303 0.91622 0.98880 0.93340 0.92879 0.89834 0.92510 0.92190 0.92509 0.89829 0.92881 0.93351 0.88173 0.88175 0.73993 0.71214 0.77366 0.87196 0.85017 0.92029 0.86013 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.17 37.16 0.30 -0.77 16 2 C -0.05 -0.28 0.77 -154.51 -0.12 -0.40 16 3 C -0.14 -0.61 8.47 37.16 0.31 -0.30 16 4 C -0.16 -1.06 8.18 37.16 0.30 -0.76 16 5 C -0.12 -0.54 4.77 -27.89 -0.13 -0.68 16 6 C 0.52 3.81 7.36 -10.99 -0.08 3.73 16 7 O -0.52 -5.51 11.19 5.55 0.06 -5.44 16 8 N -0.53 -3.77 6.26 31.22 0.20 -3.57 16 9 N -0.54 -5.68 6.26 27.63 0.17 -5.51 16 10 C 0.71 9.87 8.52 -86.92 -0.74 9.13 16 11 O -0.55 -10.14 14.62 5.29 0.08 -10.06 16 12 N -0.67 -8.46 5.30 -14.18 -0.08 -8.54 16 13 C 0.05 0.76 6.30 -83.62 -0.53 0.23 16 14 C -0.09 -1.49 9.96 -39.41 -0.39 -1.89 16 15 C -0.22 -4.54 9.16 -39.42 -0.36 -4.90 16 16 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 17 O -0.18 -4.94 9.76 -0.03 0.00 -4.94 16 18 C -0.39 -10.73 9.48 30.88 0.29 -10.43 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.04 5.49 -17.51 -0.10 0.95 16 21 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 22 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.18 -3.83 9.99 -39.42 -0.39 -4.22 16 27 C -0.07 -1.26 8.69 -39.42 -0.34 -1.60 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.76 5.51 -51.93 -0.29 0.48 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.76 5.51 -51.93 -0.29 0.47 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.42 1.77 6.71 -182.60 -1.23 0.55 16 40 H 0.44 4.88 8.10 -182.59 -1.48 3.40 16 41 H 0.39 3.27 6.76 -40.82 -0.28 3.00 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.13 2.69 5.63 -52.49 -0.30 2.39 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 46 H 0.13 2.48 6.22 -52.49 -0.33 2.16 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -34.22 377.22 -8.61 -42.83 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.23 Total: 7.33 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.23 Total: -8.65 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 1.05 Total: -41.86 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.14 Total: -20.45 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.22 -8.61 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325339621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.926 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds