Wall clock time and date at job start Tue Mar 31 2020 18:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47030 * 2 1 4 4 C 1.53002 * 109.46944 * 240.00145 * 2 1 3 5 5 C 1.52996 * 109.47216 * 120.00038 * 2 1 3 6 6 C 1.50700 * 109.47220 * 59.99721 * 5 2 1 7 7 O 1.21291 * 119.99963 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00244 * 180.02562 * 6 5 2 9 9 N 1.40100 * 119.99889 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99827 * 179.97438 * 9 8 6 11 11 O 1.21591 * 120.00106 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00269 * 0.02562 * 10 9 8 13 13 C 1.40022 * 120.00214 * 175.46868 * 12 10 9 14 14 C 1.38916 * 119.99985 * 215.13113 * 13 12 10 15 15 C 1.38013 * 119.99678 * 180.02562 * 14 13 12 16 16 C 1.38896 * 120.00180 * 0.02562 * 15 14 13 17 17 O 1.35784 * 120.00021 * 179.97438 * 16 15 14 18 18 C 1.34820 * 116.99802 * 5.35185 * 17 16 15 19 19 H 1.07994 * 119.99840 * 354.96883 * 18 17 16 20 20 C 1.38631 * 119.99903 * 174.95976 * 18 17 16 21 21 N 1.31579 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47245 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47010 * 120.00421 * 22 20 18 25 25 H 1.48509 * 109.46977 * 240.00199 * 22 20 18 26 26 C 1.38903 * 120.00374 * 0.23239 * 16 15 14 27 27 C 1.38013 * 119.99940 * 359.49008 * 26 16 15 28 28 H 1.09000 * 109.47211 * 300.00391 * 1 2 3 29 29 H 1.09005 * 109.47220 * 59.99698 * 1 2 3 30 30 H 1.08995 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47161 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47592 * 299.99746 * 3 2 1 33 33 H 1.09006 * 109.47320 * 60.00187 * 3 2 1 34 34 H 1.08994 * 109.46999 * 299.99545 * 4 2 1 35 35 H 1.08996 * 109.46887 * 60.00148 * 4 2 1 36 36 H 1.09005 * 109.46827 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47351 * 300.00223 * 5 2 1 38 38 H 1.08993 * 109.47534 * 179.97438 * 5 2 1 39 39 H 0.96998 * 120.00208 * 0.02562 * 8 6 5 40 40 H 0.97003 * 120.00408 * 359.97438 * 9 8 6 41 41 H 0.97006 * 119.99526 * 355.46927 * 12 10 9 42 42 H 1.07999 * 120.00365 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.99654 * 180.02562 * 15 14 13 44 44 H 0.97002 * 119.99274 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.99881 * 179.71880 * 26 16 15 46 46 H 1.08000 * 120.00293 * 180.24986 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5376 -2.1420 1.2492 7 8 0.8406 -2.5389 0.3394 8 7 1.8628 -2.9718 2.2603 9 7 1.3962 -4.2928 2.2600 10 6 1.7218 -5.1227 3.2708 11 8 1.3164 -6.2691 3.2709 12 7 2.4958 -4.6817 4.2822 13 6 2.7560 -5.5129 5.3785 14 6 2.8711 -4.9682 6.6512 15 6 3.1281 -5.7874 7.7318 16 6 3.2721 -7.1564 7.5466 17 8 3.5255 -7.9624 8.6096 18 6 3.5152 -7.3880 9.8293 19 1 3.3925 -6.3190 9.9217 20 6 3.6620 -8.1696 10.9648 21 7 3.8118 -9.4720 10.8521 22 14 3.6470 -7.3739 12.6547 23 1 3.4660 -5.9071 12.5096 24 1 2.5292 -7.9343 13.4558 25 1 4.9346 -7.6477 13.3422 26 6 3.1624 -7.7005 6.2733 27 6 2.8997 -6.8821 5.1935 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6766 -0.2075 2.1392 38 1 3.1299 -0.7217 1.2490 39 1 2.4199 -2.6544 2.9882 40 1 0.8387 -4.6102 1.5323 41 1 2.8726 -3.7884 4.2505 42 1 2.7603 -3.9036 6.7951 43 1 3.2171 -5.3640 8.7213 44 1 3.9148 -10.0188 11.6466 45 1 3.2789 -8.7644 6.1288 46 1 2.8104 -7.3055 4.2040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325339621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:59 Heat of formation + Delta-G solvation = -52.351743 kcal Electronic energy + Delta-G solvation = -27827.171927 eV Core-core repulsion = 23718.448051 eV Total energy + Delta-G solvation = -4108.723876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03090 -41.11016 -40.40910 -38.37941 -37.76249 -36.57452 -35.33295 -34.11835 -32.54718 -31.85632 -29.51998 -28.69842 -28.06384 -27.96924 -27.29574 -24.06530 -23.64779 -22.64388 -21.96077 -20.66237 -19.82613 -19.42247 -19.08296 -18.72253 -17.80203 -17.01239 -16.90901 -16.36107 -16.32655 -16.25773 -15.90516 -15.51545 -15.41070 -15.28630 -15.22014 -15.10104 -14.56519 -14.21328 -13.80635 -13.61522 -13.34947 -13.28919 -13.15666 -12.92920 -12.74453 -12.68226 -12.57530 -12.44929 -12.07446 -12.05624 -11.98263 -11.70717 -11.56051 -11.49001 -11.39973 -11.01864 -10.65538 -10.58057 -9.82919 -9.49471 -8.60360 -8.43446 -6.10850 0.53258 0.55085 0.78568 1.38856 1.43377 1.47833 1.57411 1.83102 1.95883 2.20773 2.84580 3.17720 3.35532 3.54557 3.74185 3.97242 3.98110 4.08143 4.15604 4.26330 4.51782 4.57459 4.60872 4.69958 4.71964 4.72681 4.90370 4.91057 5.03688 5.04951 5.14236 5.17795 5.21671 5.23076 5.28430 5.34907 5.36177 5.45159 5.56013 5.56721 5.61920 5.68975 5.75642 6.05167 6.16088 6.29681 6.62009 7.00935 7.18526 7.35318 7.82128 8.79993 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.001838 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.313031 B =15229.197006 C =16004.876876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.051 4.051 3 C -0.139 4.139 4 C -0.155 4.155 5 C -0.119 4.119 6 C 0.514 3.486 7 O -0.557 6.557 8 N -0.520 5.520 9 N -0.528 5.528 10 C 0.709 3.291 11 O -0.602 6.602 12 N -0.654 5.654 13 C 0.076 3.924 14 C -0.073 4.073 15 C -0.219 4.219 16 C 0.109 3.891 17 O -0.232 6.232 18 C -0.410 4.410 19 H 0.109 0.891 20 C -0.027 4.027 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.245 1.245 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.191 4.191 27 C -0.073 4.073 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.435 0.565 40 H 0.441 0.559 41 H 0.419 0.581 42 H 0.165 0.835 43 H 0.135 0.865 44 H 0.271 0.729 45 H 0.110 0.890 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 26.892 -18.500 32.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.212 4.212 5 C -0.160 4.160 6 C 0.303 3.697 7 O -0.433 6.433 8 N -0.274 5.274 9 N -0.282 5.282 10 C 0.409 3.591 11 O -0.478 6.478 12 N -0.306 5.306 13 C -0.018 4.018 14 C -0.093 4.093 15 C -0.239 4.239 16 C 0.058 3.942 17 O -0.139 6.139 18 C -0.486 4.486 19 H 0.127 0.873 20 C -0.224 4.224 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.168 1.168 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.211 4.211 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.279 0.721 40 H 0.287 0.713 41 H 0.258 0.742 42 H 0.182 0.818 43 H 0.152 0.848 44 H 0.080 0.920 45 H 0.128 0.872 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.816 25.424 -18.913 31.740 hybrid contribution 0.048 -0.255 0.614 0.666 sum -1.768 25.169 -18.300 31.169 Atomic orbital electron populations 1.22097 0.95173 1.02493 1.01433 1.20299 0.95500 0.95705 0.93688 1.21859 1.01663 0.93606 1.02471 1.22096 1.00708 1.01364 0.97017 1.21895 1.04530 0.87792 1.01741 1.21757 0.79833 0.88277 0.79869 1.90661 1.39022 1.77457 1.36196 1.45204 1.54089 1.00395 1.27748 1.44410 1.56037 1.01596 1.26168 1.15771 0.79581 0.83752 0.80001 1.91034 1.60713 1.17844 1.78158 1.41953 1.51629 1.18586 1.18383 1.17067 1.08526 0.89727 0.86480 1.20817 0.98859 1.00864 0.88757 1.21131 1.09926 0.92240 1.00589 1.19891 0.94435 0.91294 0.88603 1.83968 1.78996 1.36927 1.13998 1.21931 1.51880 0.94435 0.80375 0.87334 1.26644 0.96015 0.95949 1.03810 1.70222 1.48265 1.06172 1.31489 0.84495 0.78304 0.78914 0.74279 1.16784 1.19851 1.19578 1.20251 1.10277 1.00062 0.90467 1.20863 0.97413 0.92951 0.98091 0.92340 0.93320 0.92361 0.91380 0.92761 0.91402 0.92341 0.93324 0.92316 0.85371 0.85345 0.72061 0.71313 0.74211 0.81760 0.84775 0.91985 0.87188 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.17 71.98 0.59 -1.30 16 2 C -0.05 -0.43 0.77 -52.18 -0.04 -0.47 16 3 C -0.14 -0.69 8.47 71.98 0.61 -0.08 16 4 C -0.15 -1.87 8.18 71.98 0.59 -1.28 16 5 C -0.12 -0.52 4.77 29.85 0.14 -0.37 16 6 C 0.51 6.04 7.36 87.66 0.65 6.68 16 7 O -0.56 -11.01 11.19 -3.07 -0.03 -11.04 16 8 N -0.52 -5.40 6.26 -173.52 -1.09 -6.49 16 9 N -0.53 -9.86 6.26 -184.74 -1.16 -11.02 16 10 C 0.71 17.98 8.52 179.06 1.53 19.51 16 11 O -0.60 -21.43 14.62 -4.00 -0.06 -21.49 16 12 N -0.65 -13.83 5.30 -317.05 -1.68 -15.51 16 13 C 0.08 2.33 6.30 38.16 0.24 2.57 16 14 C -0.07 -2.17 9.96 22.38 0.22 -1.95 16 15 C -0.22 -8.75 9.16 22.37 0.20 -8.55 16 16 C 0.11 5.32 6.65 22.59 0.15 5.47 16 17 O -0.23 -13.84 9.76 -23.01 -0.22 -14.07 16 18 C -0.41 -23.22 9.48 67.91 0.64 -22.57 16 19 H 0.11 5.46 5.20 -2.91 -0.02 5.45 16 20 C -0.03 -1.52 5.49 84.82 0.47 -1.05 16 21 N -0.92 -56.58 13.67 21.61 0.30 -56.29 16 22 Si 1.02 41.78 29.55 68.60 2.03 43.81 16 23 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 26 C -0.19 -8.55 9.99 22.38 0.22 -8.32 16 27 C -0.07 -2.77 8.69 22.38 0.19 -2.58 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.59 16 30 H 0.06 1.03 5.51 -2.39 -0.01 1.02 16 31 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.21 8.14 -2.38 -0.02 0.20 16 34 H 0.06 1.03 5.51 -2.39 -0.01 1.01 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.44 1.37 6.71 -213.32 -1.43 -0.06 16 40 H 0.44 9.13 8.10 -213.32 -1.73 7.40 16 41 H 0.42 4.59 6.76 -92.70 -0.63 3.97 16 42 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.13 5.26 5.63 -2.91 -0.02 5.25 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 46 H 0.13 5.01 6.22 -2.91 -0.02 5.00 16 Total: -1.00 -82.15 377.22 1.76 -80.40 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -2.73 Total: 25.98 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 6.41 Total: -14.28 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -3.63 Total: -89.31 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.32 Total: -46.59 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -82.15 1.76 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325339621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.045 kcal (2) G-P(sol) polarization free energy of solvation -82.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds