Wall clock time and date at job start Tue Mar 31 2020 18:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.67693 * 250.96841 * 3 2 1 5 5 C 1.53293 * 109.71671 * 11.50951 * 3 2 1 6 6 O 1.42954 * 109.22317 * 172.04668 * 5 3 2 7 7 C 1.42965 * 114.16310 * 297.41571 * 6 5 3 8 8 C 1.52876 * 109.30057 * 62.45390 * 7 6 5 9 9 N 1.47151 * 109.68004 * 130.45482 * 3 2 1 10 10 C 1.34783 * 120.98104 * 9.67600 * 9 3 2 11 11 O 1.21349 * 120.00177 * 5.48838 * 10 9 3 12 12 C 1.49451 * 119.99955 * 185.48435 * 10 9 3 13 13 O 1.21351 * 119.99770 * 85.92548 * 12 10 9 14 14 N 1.34777 * 120.00243 * 265.93590 * 12 10 9 15 15 C 1.47081 * 120.87983 * 174.93149 * 14 12 10 16 16 C 1.53243 * 108.67932 * 231.10226 * 15 14 12 17 17 N 1.46952 * 109.31185 * 306.46886 * 16 15 14 18 18 C 1.46895 * 110.97032 * 187.06419 * 17 16 15 19 19 C 1.50699 * 109.47163 * 65.49485 * 18 17 16 20 20 H 1.08001 * 119.99878 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47367 * 89.99762 * 23 21 19 25 25 H 1.48509 * 109.46945 * 209.99389 * 23 21 19 26 26 H 1.48504 * 109.47150 * 329.99576 * 23 21 19 27 27 C 1.46903 * 111.44267 * 62.80907 * 17 16 15 28 28 C 1.47075 * 120.87955 * 354.94356 * 14 12 10 29 29 H 4.19073 * 14.98860 * 359.97438 * 4 2 1 30 30 H 1.09001 * 109.50693 * 291.96498 * 5 3 2 31 31 H 1.09000 * 109.51497 * 52.06535 * 5 3 2 32 32 H 1.09010 * 109.51209 * 182.50914 * 7 6 5 33 33 H 1.08996 * 109.51366 * 302.60373 * 7 6 5 34 34 H 1.09000 * 109.61956 * 188.11749 * 8 7 6 35 35 H 1.08996 * 109.52416 * 67.69839 * 8 7 6 36 36 H 1.09001 * 109.62924 * 350.91395 * 15 14 12 37 37 H 1.09003 * 109.63072 * 111.29620 * 15 14 12 38 38 H 1.08996 * 109.49298 * 66.22888 * 16 15 14 39 39 H 1.09000 * 109.49130 * 186.30937 * 16 15 14 40 40 H 1.08994 * 109.47583 * 185.49998 * 18 17 16 41 41 H 1.09006 * 109.46888 * 305.50002 * 18 17 16 42 42 H 0.96996 * 120.00476 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.49530 * 177.01883 * 27 17 16 44 44 H 1.09003 * 109.51254 * 56.95491 * 27 17 16 45 45 H 1.08995 * 109.63114 * 248.50758 * 28 14 12 46 46 H 1.08999 * 109.62835 * 8.89967 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0129 0.3355 0.9703 5 6 3.1638 -1.4131 -0.2879 6 8 4.5811 -1.3675 -0.4694 7 6 5.0031 -0.5797 -1.5852 8 6 4.5787 0.8728 -1.3677 9 7 3.1412 0.8999 -1.0543 10 6 2.3019 1.7201 -1.7173 11 8 1.1383 1.7976 -1.3818 12 6 2.8044 2.5342 -2.8655 13 8 2.8350 2.0564 -3.9805 14 7 3.2238 3.7988 -2.6625 15 6 3.8243 4.5795 -3.7548 16 6 5.1553 5.1621 -3.2675 17 7 4.9330 5.9032 -2.0182 18 6 6.1493 6.6168 -1.6067 19 6 6.4715 7.6855 -2.6191 20 1 5.8361 7.8213 -3.4817 21 6 7.5776 8.4899 -2.4441 22 7 8.3511 8.3248 -1.3934 23 14 7.9766 9.8150 -3.6987 24 1 7.3033 11.0811 -3.3127 25 1 9.4455 10.0290 -3.7425 26 1 7.4983 9.3885 -5.0384 27 6 4.4535 5.0192 -0.9474 28 6 3.0932 4.4347 -1.3427 29 1 -1.0501 0.0003 -0.0005 30 1 2.9251 -2.0662 0.5515 31 1 2.6923 -1.7963 -1.1929 32 1 6.0878 -0.6332 -1.6792 33 1 4.5397 -0.9600 -2.4955 34 1 4.7679 1.4490 -2.2734 35 1 5.1435 1.2969 -0.5375 36 1 4.0006 3.9319 -4.6137 37 1 3.1522 5.3893 -4.0387 38 1 5.8621 4.3525 -3.0861 39 1 5.5577 5.8337 -4.0259 40 1 5.9885 7.0766 -0.6316 41 1 6.9796 5.9133 -1.5442 42 1 9.1290 8.8909 -1.2701 43 1 4.3500 5.5892 -0.0241 44 1 5.1674 4.2094 -0.7968 45 1 2.3524 5.2327 -1.3924 46 1 2.7829 3.6922 -0.6076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329493984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:46 Heat of formation + Delta-G solvation = -13.560278 kcal Electronic energy + Delta-G solvation = -30123.299765 eV Core-core repulsion = 26016.258013 eV Total energy + Delta-G solvation = -4107.041752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36493 -39.77251 -38.46808 -37.60739 -35.38276 -34.63113 -33.96804 -32.48798 -31.05141 -30.93676 -28.87803 -28.25623 -26.03484 -25.18170 -24.45613 -23.22648 -22.37195 -21.68265 -20.40608 -19.58946 -18.28860 -17.78080 -17.02681 -16.90739 -16.57033 -16.37577 -15.82409 -15.56595 -15.45144 -15.22857 -14.83993 -14.79537 -14.57261 -14.04266 -13.96260 -13.77894 -13.55195 -13.40091 -12.96122 -12.69840 -12.39229 -12.15353 -12.03927 -11.86234 -11.38882 -11.36921 -11.31639 -10.97564 -10.89580 -10.78012 -10.69131 -10.66730 -10.61304 -10.51081 -9.96690 -9.38785 -9.09353 -9.04047 -8.76156 -8.52641 -7.45665 -6.12647 -4.14851 1.73438 1.95499 2.32444 2.67175 2.80181 3.19441 3.26584 3.32981 3.33252 3.35892 3.86373 4.08293 4.32677 4.33455 4.50854 4.60080 4.62851 4.70406 4.79394 5.03196 5.06878 5.17941 5.24297 5.25337 5.29864 5.34093 5.43044 5.47088 5.64770 5.68193 5.72835 5.82594 5.85145 6.06039 6.20405 6.35111 6.50620 6.57455 6.69854 7.10827 7.11121 7.18810 7.52200 7.53796 7.65986 7.73313 7.90564 8.01857 8.37898 8.92207 9.50238 10.98090 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002866 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.436344 B = 9766.934693 C =10181.357730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.198 4.198 3 C 0.231 3.769 4 H 0.108 0.892 5 C 0.058 3.942 6 O -0.371 6.371 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.602 5.602 10 C 0.522 3.478 11 O -0.490 6.490 12 C 0.513 3.487 13 O -0.521 6.521 14 N -0.588 5.588 15 C 0.112 3.888 16 C 0.053 3.947 17 N -0.536 5.536 18 C 0.195 3.805 19 C -0.512 4.512 20 H 0.064 0.936 21 C 0.057 3.943 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.043 3.957 28 C 0.111 3.889 29 H 0.217 0.783 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.026 0.974 39 H 0.102 0.898 40 H 0.032 0.968 41 H -0.008 1.008 42 H 0.262 0.738 43 H 0.085 0.915 44 H 0.028 0.972 45 H 0.085 0.915 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 -18.337 3.270 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.199 4.199 3 C 0.129 3.871 4 H 0.126 0.874 5 C -0.020 4.020 6 O -0.289 6.289 7 C -0.031 4.031 8 C -0.051 4.051 9 N -0.340 5.340 10 C 0.304 3.696 11 O -0.362 6.362 12 C 0.295 3.705 13 O -0.397 6.397 14 N -0.322 5.322 15 C -0.009 4.009 16 C -0.076 4.076 17 N -0.261 5.261 18 C 0.070 3.930 19 C -0.550 4.550 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.086 4.086 28 C -0.012 4.012 29 H 0.234 0.766 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.120 0.880 40 H 0.050 0.950 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.084 -18.197 2.957 21.013 hybrid contribution 0.598 0.516 -0.547 0.961 sum -9.486 -17.682 2.409 20.210 Atomic orbital electron populations 1.24693 0.95569 0.98526 0.97752 1.21773 0.93120 1.02160 1.02832 1.18669 0.85568 0.91124 0.91746 0.87420 1.22990 0.81726 0.94083 1.03154 1.88019 1.21217 1.70280 1.49402 1.22973 1.01684 0.89043 0.89438 1.22523 0.79688 0.99265 1.03584 1.48276 1.08651 1.40039 1.37044 1.20418 0.86455 0.80535 0.82149 1.90910 1.16566 1.64624 1.64118 1.20171 0.78397 0.82737 0.89242 1.90792 1.54080 1.71553 1.23324 1.48310 1.58417 1.12180 1.13293 1.22038 0.95348 0.94734 0.88786 1.22362 0.93536 0.96625 0.95062 1.62042 1.36488 1.25749 1.01863 1.19725 0.83654 0.92501 0.97088 1.21125 1.09489 1.16150 1.08251 0.91753 1.24983 0.96101 0.97623 0.95772 1.69945 1.16028 1.39692 1.27975 0.86491 0.77333 0.81980 0.81569 1.20593 1.21306 1.19789 1.22373 0.93936 0.95738 0.96559 1.22011 0.99320 0.97484 0.82362 0.76625 0.86723 0.91890 0.86623 0.91946 0.88477 0.89013 0.89094 0.90209 0.95591 0.87957 0.94968 0.98980 0.92812 0.89652 0.95399 0.89712 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 17.85 29.55 0.53 -1.08 16 2 C -0.20 -2.31 10.07 -37.12 -0.37 -2.68 16 3 C 0.23 2.31 3.52 -70.21 -0.25 2.06 16 4 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 5 C 0.06 0.48 6.25 37.31 0.23 0.71 16 6 O -0.37 -3.38 10.74 -35.23 -0.38 -3.76 16 7 C 0.05 0.38 6.97 37.09 0.26 0.64 16 8 C 0.07 0.69 6.54 -3.75 -0.02 0.67 16 9 N -0.60 -6.96 3.03 -168.69 -0.51 -7.47 16 10 C 0.52 7.55 5.38 -11.58 -0.06 7.48 16 11 O -0.49 -8.03 13.33 5.50 0.07 -7.96 16 12 C 0.51 7.94 5.53 -11.58 -0.06 7.88 16 13 O -0.52 -9.26 16.58 5.50 0.09 -9.17 16 14 N -0.59 -8.70 3.01 -172.97 -0.52 -9.22 16 15 C 0.11 1.70 6.57 -3.60 -0.02 1.68 16 16 C 0.05 0.92 5.46 -3.67 -0.02 0.90 16 17 N -0.54 -10.35 4.62 -235.72 -1.09 -11.44 16 18 C 0.19 4.68 4.73 -4.98 -0.02 4.65 16 19 C -0.51 -13.45 8.41 -34.44 -0.29 -13.74 16 20 H 0.06 1.67 7.12 -52.49 -0.37 1.29 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 23 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 28 C 0.11 1.54 6.53 -3.60 -0.02 1.52 16 29 H 0.22 1.68 7.80 -54.09 -0.42 1.26 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.04 6.40 -51.93 -0.33 0.71 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.33 7.10 -51.93 -0.37 0.96 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 41 H -0.01 -0.20 8.13 -51.93 -0.42 -0.62 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.09 1.31 7.99 -51.93 -0.41 0.89 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.07 0.96 6.37 -51.93 -0.33 0.63 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -32.54 375.59 -7.99 -40.53 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.79 Total: -0.93 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -0.25 Total: 12.79 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -1.38 Total: -52.91 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.21 Total: -20.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.54 -7.99 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329493984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.973 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds