Wall clock time and date at job start Tue Mar 31 2020 18:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47207 * 2 1 4 4 C 1.53003 * 109.46988 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.35755 * 116.99949 * 180.02562 * 5 4 3 7 7 C 1.38897 * 119.60988 * 179.97438 * 6 5 4 8 8 C 1.38329 * 119.18280 * 179.72214 * 7 6 5 9 9 C 1.39362 * 118.42645 * 0.53560 * 8 7 6 10 10 N 1.40190 * 120.42470 * 179.75749 * 9 8 7 11 11 C 1.34778 * 119.99893 * 327.18122 * 10 9 8 12 12 O 1.21592 * 119.99779 * 354.69580 * 11 10 9 13 13 N 1.34773 * 119.99766 * 174.69445 * 11 10 9 14 14 C 1.47587 * 134.49061 * 179.97438 * 13 11 10 15 15 C 1.53945 * 86.11758 * 155.36389 * 14 13 11 16 16 O 1.42903 * 113.73802 * 269.15736 * 15 14 13 17 17 C 1.50697 * 113.74188 * 137.95370 * 15 14 13 18 18 H 1.07993 * 120.00405 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99579 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99694 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 120.00218 * 0.02562 * 19 17 15 22 22 H 1.48499 * 109.47120 * 269.99538 * 21 19 17 23 23 H 1.48500 * 109.47430 * 29.99831 * 21 19 17 24 24 H 1.48508 * 109.47038 * 149.99630 * 21 19 17 25 25 C 1.47576 * 134.49658 * 0.02562 * 13 11 10 26 26 C 1.38650 * 119.15299 * 359.48386 * 9 8 7 27 27 N 1.31949 * 120.73610 * 0.25298 * 26 9 8 28 28 H 1.08993 * 109.47713 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46856 * 299.99709 * 1 2 3 30 30 H 1.09002 * 109.47581 * 59.99129 * 1 2 3 31 31 H 1.09000 * 109.46411 * 240.00719 * 2 1 3 32 32 H 1.08993 * 109.47374 * 120.00892 * 2 1 3 33 33 H 1.08999 * 109.46926 * 60.00441 * 3 2 1 34 34 H 1.08995 * 109.47418 * 300.00232 * 3 2 1 35 35 H 1.08999 * 109.47156 * 60.00301 * 4 3 2 36 36 H 1.09004 * 109.47208 * 300.00185 * 4 3 2 37 37 H 1.08001 * 120.40537 * 359.97302 * 7 6 5 38 38 H 1.08003 * 120.78962 * 180.26815 * 8 7 6 39 39 H 0.96998 * 119.99743 * 147.17576 * 10 9 8 40 40 H 1.08996 * 113.76798 * 41.06109 * 14 13 11 41 41 H 1.09003 * 113.76931 * 269.66177 * 14 13 11 42 42 H 0.96700 * 114.00027 * 178.07648 * 16 15 14 43 43 H 0.97004 * 120.00037 * 180.02562 * 20 19 17 44 44 H 1.09007 * 113.77026 * 90.33404 * 25 13 11 45 45 H 1.09000 * 113.77112 * 318.94167 * 25 13 11 46 46 H 1.07998 * 119.62739 * 180.27358 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0464 2.7898 0.0000 6 6 5.3923 2.9676 -0.0010 7 6 5.9144 4.2547 -0.0011 8 6 7.2871 4.4257 0.0038 9 6 8.0969 3.2915 -0.0030 10 7 9.4933 3.4163 -0.0035 11 6 10.0767 4.4566 -0.6312 12 8 9.4005 5.2332 -1.2778 13 7 11.4094 4.6360 -0.5421 14 6 12.3574 5.6308 -1.0804 15 6 13.2613 5.2583 0.1089 16 8 13.0452 6.0631 1.2698 17 6 14.7183 5.1291 -0.2536 18 1 15.0383 5.2950 -1.2716 19 6 15.6429 4.7999 0.7148 20 7 16.9144 4.6866 0.3984 21 14 15.0895 4.5135 2.4758 22 1 15.1327 5.7961 3.2230 23 1 13.7016 3.9853 2.4789 24 1 15.9943 3.5313 3.1255 25 6 12.5072 3.9160 0.1322 26 6 7.5040 2.0382 -0.0033 27 7 6.1904 1.9136 -0.0023 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9330 0.9288 -0.8909 36 1 3.9338 0.9285 0.8891 37 1 5.2568 5.1114 -0.0007 38 1 7.7210 5.4147 0.0082 39 1 10.0395 2.7539 0.4478 40 1 11.9860 6.6550 -1.0461 41 1 12.7743 5.3604 -2.0505 42 1 13.5903 5.8134 2.0285 43 1 17.5649 4.4546 1.0796 44 1 12.9679 3.1425 -0.4823 45 1 12.2554 3.5706 1.1349 46 1 8.1243 1.1541 -0.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350553135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:49 Heat of formation + Delta-G solvation = -54.385074 kcal Electronic energy + Delta-G solvation = -27921.608414 eV Core-core repulsion = 23812.796367 eV Total energy + Delta-G solvation = -4108.812048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13293 -41.34744 -39.99939 -38.86289 -36.32271 -36.18663 -35.63536 -34.53376 -33.37112 -31.47893 -30.39483 -29.34965 -27.30757 -27.03169 -25.57847 -24.24030 -23.74822 -22.14424 -22.01137 -20.86359 -19.73215 -19.38577 -19.04348 -18.56127 -18.03073 -17.75284 -17.47346 -16.74827 -16.63907 -15.92572 -15.62426 -15.49543 -15.41510 -15.29113 -14.98548 -14.58950 -14.54831 -14.45420 -14.31335 -14.08049 -13.90200 -13.70732 -13.20635 -13.11151 -12.94113 -12.70400 -12.42285 -12.15796 -12.05786 -11.99470 -11.93902 -11.75297 -11.62701 -11.40471 -11.16339 -10.98997 -10.87936 -10.61281 -10.46063 -9.75689 -8.94550 -8.40978 -6.53561 0.02007 0.15371 1.24105 1.29099 1.30491 1.42496 1.94729 2.00406 2.19007 2.65455 2.72239 2.81580 3.26080 3.29485 3.77440 3.84199 3.86275 3.91172 3.94067 4.07935 4.19584 4.33068 4.36638 4.36824 4.46044 4.52594 4.58323 4.64002 4.67643 4.67932 4.76327 4.87324 4.90772 4.93449 4.99750 5.02475 5.14194 5.23168 5.29491 5.31762 5.43308 5.54866 6.02805 6.06774 6.22443 6.55322 6.67718 6.71515 6.86603 7.14509 7.35114 8.74285 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031053 B = 0.001907 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.477465 B =14678.858854 C =15043.320076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.069 3.931 5 O -0.316 6.316 6 C 0.291 3.709 7 C -0.168 4.168 8 C -0.056 4.056 9 C 0.078 3.922 10 N -0.665 5.665 11 C 0.722 3.278 12 O -0.619 6.619 13 N -0.649 5.649 14 C 0.147 3.853 15 C 0.185 3.815 16 O -0.560 6.560 17 C -0.543 4.543 18 H 0.058 0.942 19 C 0.029 3.971 20 N -0.924 5.924 21 Si 0.919 3.081 22 H -0.261 1.261 23 H -0.226 1.226 24 H -0.284 1.284 25 C 0.076 3.924 26 C 0.120 3.880 27 N -0.526 5.526 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.422 0.578 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.355 0.645 43 H 0.273 0.727 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.285 -10.825 3.445 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.006 4.006 5 O -0.223 6.223 6 C 0.112 3.888 7 C -0.189 4.189 8 C -0.084 4.084 9 C -0.020 4.020 10 N -0.314 5.314 11 C 0.426 3.574 12 O -0.500 6.500 13 N -0.386 5.386 14 C 0.024 3.976 15 C 0.145 3.855 16 O -0.372 6.372 17 C -0.581 4.581 18 H 0.076 0.924 19 C -0.173 4.173 20 N -0.561 5.561 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.150 1.150 24 H -0.210 1.210 25 C -0.047 4.047 26 C -0.039 4.039 27 N -0.249 5.249 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.260 0.740 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.208 0.792 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -26.759 -10.675 2.640 28.931 hybrid contribution 1.701 0.260 1.015 1.998 sum -25.058 -10.416 3.655 27.382 Atomic orbital electron populations 1.21754 0.94614 1.02346 1.02158 1.21414 0.96774 0.94616 1.02810 1.21615 0.91317 0.98787 1.03560 1.22809 0.95376 0.80126 1.02295 1.86211 1.16295 1.31771 1.88066 1.19869 0.84354 0.90071 0.94545 1.21096 0.94772 0.96455 1.06611 1.21495 0.92481 0.99476 0.94970 1.18553 0.82840 0.95327 1.05251 1.42210 1.04587 1.27575 1.57032 1.15511 0.80759 0.81682 0.79477 1.90866 1.62700 1.48420 1.48050 1.49155 1.02733 1.32363 1.54323 1.23208 0.84088 0.92762 0.97563 1.20564 0.92618 0.88104 0.84262 1.86486 1.66667 1.60798 1.23210 1.21338 0.90440 1.48928 0.97388 0.92427 1.25818 0.94628 0.93457 1.03364 1.69999 1.02651 1.47281 1.36181 0.86337 0.80271 0.79276 0.79715 1.18710 1.15006 1.21026 1.24501 0.83714 0.98524 0.97944 1.22515 0.89319 0.95792 0.96228 1.67343 1.05688 1.32822 1.19049 0.91801 0.92437 0.92538 0.91446 0.91294 0.90842 0.91035 0.91996 0.91693 0.82407 0.84484 0.73994 0.91004 0.87905 0.79192 0.91759 0.87415 0.89324 0.79100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.18 5.93 30.60 0.18 -1.00 16 3 C -0.12 -1.49 5.58 30.60 0.17 -1.32 16 4 C 0.07 1.21 5.31 71.98 0.38 1.59 16 5 O -0.32 -7.21 10.12 -90.80 -0.92 -8.13 16 6 C 0.29 7.26 7.49 84.79 0.63 7.90 16 7 C -0.17 -4.19 10.03 22.45 0.23 -3.96 16 8 C -0.06 -1.59 8.76 22.56 0.20 -1.39 16 9 C 0.08 2.04 6.31 38.17 0.24 2.28 16 10 N -0.66 -17.86 5.36 -316.76 -1.70 -19.56 16 11 C 0.72 25.53 8.52 179.06 1.53 27.05 16 12 O -0.62 -25.79 14.77 -4.01 -0.06 -25.85 16 13 N -0.65 -23.21 3.61 -858.24 -3.10 -26.30 16 14 C 0.15 5.70 8.22 86.48 0.71 6.41 16 15 C 0.19 7.75 1.06 -10.87 -0.01 7.74 16 16 O -0.56 -24.09 13.32 -148.98 -1.98 -26.08 16 17 C -0.54 -27.00 9.20 25.60 0.24 -26.76 16 18 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 19 C 0.03 1.44 5.47 84.65 0.46 1.90 16 20 N -0.92 -51.08 13.96 21.45 0.30 -50.78 16 21 Si 0.92 36.01 24.34 68.60 1.67 37.68 16 22 H -0.26 -10.00 7.06 99.48 0.70 -9.30 16 23 H -0.23 -7.60 5.29 99.48 0.53 -7.08 16 24 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 25 C 0.08 2.57 7.05 86.49 0.61 3.18 16 26 C 0.12 2.63 11.11 84.77 0.94 3.57 16 27 N -0.53 -12.64 9.20 -308.45 -2.84 -15.48 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.06 1.13 8.10 -2.38 -0.02 1.11 16 37 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 38 H 0.14 4.37 6.48 -2.91 -0.02 4.36 16 39 H 0.42 8.73 8.44 -92.71 -0.78 7.95 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.10 3.78 8.09 -2.39 -0.02 3.76 16 42 H 0.36 14.28 3.31 -74.06 -0.25 14.03 16 43 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.11 3.42 8.09 -2.38 -0.02 3.41 16 45 H 0.09 2.64 6.99 -2.39 -0.02 2.62 16 46 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -64.91 379.33 -1.60 -66.51 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -0.20 Total: 41.35 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 7.22 Total: 26.63 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -7.33 Total: -112.12 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -2.96 Total: -60.06 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 1.67 Total: 37.68 kcal Total: -64.91 -1.60 -66.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350553135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.129 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds