Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 C 1.52990 * 109.47300 * 240.00085 * 2 1 3 5 5 C 1.52998 * 109.47118 * 119.99588 * 2 1 3 6 6 H 1.08993 * 109.46945 * 185.91633 * 5 2 1 7 7 N 1.46503 * 109.47227 * 305.92174 * 5 2 1 8 8 C 1.34773 * 119.99755 * 274.99266 * 7 5 2 9 9 N 1.34775 * 119.99750 * 179.97438 * 8 7 5 10 10 O 1.21582 * 120.00085 * 0.02562 * 8 7 5 11 11 C 1.50705 * 109.46656 * 65.91788 * 5 2 1 12 12 O 1.21290 * 120.00444 * 283.76184 * 11 5 2 13 13 N 1.34771 * 119.99768 * 103.76601 * 11 5 2 14 14 C 1.39993 * 120.00191 * 176.50887 * 13 11 5 15 15 C 1.38921 * 120.00300 * 213.82869 * 14 13 11 16 16 C 1.38007 * 119.99908 * 180.02562 * 15 14 13 17 17 C 1.38898 * 120.00118 * 0.02562 * 16 15 14 18 18 O 1.35782 * 119.99866 * 180.02562 * 17 16 15 19 19 C 1.34814 * 116.99754 * 353.82016 * 18 17 16 20 20 H 1.07993 * 120.00086 * 5.58609 * 19 18 17 21 21 C 1.38633 * 119.99896 * 185.58539 * 19 18 17 22 22 N 1.31579 * 119.99604 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46963 * 90.00379 * 23 21 19 25 25 H 1.48502 * 109.47394 * 209.99786 * 23 21 19 26 26 H 1.48491 * 109.47243 * 330.00359 * 23 21 19 27 27 C 1.38916 * 120.00479 * 0.26731 * 17 16 15 28 28 C 1.38003 * 119.99722 * 359.45942 * 27 17 16 29 29 H 1.09000 * 109.46894 * 300.00293 * 1 2 3 30 30 H 1.09007 * 109.46833 * 60.00324 * 1 2 3 31 31 H 1.08991 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47168 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47194 * 299.99983 * 3 2 1 34 34 H 1.09005 * 109.46934 * 60.00124 * 3 2 1 35 35 H 1.09003 * 109.47540 * 310.20104 * 4 2 1 36 36 H 1.09008 * 109.47192 * 70.20131 * 4 2 1 37 37 H 1.08995 * 109.47355 * 190.19854 * 4 2 1 38 38 H 0.96999 * 119.99615 * 94.99847 * 7 5 2 39 39 H 0.97000 * 120.00435 * 0.02562 * 9 8 7 40 40 H 0.97003 * 119.99571 * 180.02562 * 9 8 7 41 41 H 0.96996 * 120.00410 * 356.50140 * 13 11 5 42 42 H 1.08007 * 119.99934 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.99658 * 179.97438 * 16 15 14 44 44 H 0.97003 * 119.99362 * 179.97438 * 22 21 19 45 45 H 1.07996 * 119.99709 * 179.72820 * 27 17 16 46 46 H 1.07996 * 119.99686 * 180.27263 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 1 3.1248 -0.6303 1.3038 7 7 1.4389 -0.1176 2.4412 8 6 1.9995 0.9732 2.9998 9 7 1.4461 1.5287 4.0960 10 8 3.0038 1.4567 2.5144 11 6 1.6608 -2.1780 1.1782 12 8 0.5195 -2.5194 1.4061 13 7 2.5900 -3.1014 0.8615 14 6 2.2560 -4.4609 0.8668 15 6 3.2020 -5.4072 1.2403 16 6 2.8728 -6.7474 1.2450 17 6 1.5958 -7.1502 0.8758 18 8 1.2718 -8.4688 0.8809 19 6 2.2677 -9.3428 1.1294 20 1 3.2482 -8.9810 1.4015 21 6 2.0332 -10.7059 1.0356 22 7 0.8387 -11.1466 0.7036 23 14 3.4134 -11.9168 1.3793 24 1 3.4157 -12.2683 2.8221 25 1 3.2067 -13.1454 0.5710 26 1 4.7147 -11.2997 1.0180 27 6 0.6516 -6.2045 0.4964 28 6 0.9789 -4.8639 0.4971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.5359 -1.6828 -1.3449 36 1 1.8330 -0.1130 -2.1298 37 1 3.1147 -0.8815 -1.1629 38 1 0.6374 -0.5033 2.8282 39 1 0.6446 1.1432 4.4831 40 1 1.8494 2.3141 4.4979 41 1 3.4901 -2.8242 0.6299 42 1 4.1953 -5.0941 1.5263 43 1 3.6083 -7.4831 1.5350 44 1 0.6748 -12.1004 0.6376 45 1 -0.3399 -6.5182 0.2051 46 1 0.2435 -4.1284 0.2064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361695479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = -94.527511 kcal Electronic energy + Delta-G solvation = -29169.037314 eV Core-core repulsion = 25058.484559 eV Total energy + Delta-G solvation = -4110.552755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18347 -40.96689 -40.22974 -38.50498 -37.53376 -35.47754 -35.01058 -34.15425 -33.90338 -31.86503 -30.19175 -28.25794 -28.13565 -27.75893 -27.13782 -23.97758 -23.30077 -22.27272 -21.80980 -20.11346 -19.90031 -19.49816 -19.03449 -18.69108 -17.79335 -17.45272 -17.06370 -16.41983 -16.35560 -16.07831 -15.75194 -15.52500 -15.47620 -15.14124 -15.02248 -14.67638 -14.56524 -14.38936 -14.08687 -13.85975 -13.59293 -13.28894 -13.19474 -13.08766 -12.91825 -12.68896 -12.53718 -12.47133 -12.27564 -12.11653 -11.91266 -11.71307 -11.35885 -11.29904 -11.09588 -10.78372 -10.57769 -10.55444 -10.02200 -9.83182 -8.61557 -8.44786 -6.12259 0.49784 0.55003 1.31686 1.37463 1.46681 1.54970 1.80891 2.13924 2.19517 2.32378 2.83350 3.16310 3.44109 3.53633 3.62009 3.70465 3.84431 4.05806 4.09129 4.14745 4.30992 4.48634 4.50515 4.61931 4.73569 4.76467 4.81362 4.91426 5.03287 5.03674 5.07284 5.16314 5.20019 5.23139 5.30002 5.35037 5.41921 5.46885 5.51151 5.56751 5.68568 5.82203 6.03541 6.07185 6.15768 6.44845 6.99423 7.00750 7.10145 7.65040 7.80412 8.78310 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.002299 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.773926 B =12178.569259 C =12487.303169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.119 4.119 4 C -0.149 4.149 5 C 0.168 3.832 6 H 0.111 0.889 7 N -0.724 5.724 8 C 0.706 3.294 9 N -0.850 5.850 10 O -0.621 6.621 11 C 0.513 3.487 12 O -0.543 6.543 13 N -0.643 5.643 14 C 0.064 3.936 15 C -0.080 4.080 16 C -0.221 4.221 17 C 0.109 3.891 18 O -0.232 6.232 19 C -0.411 4.411 20 H 0.106 0.894 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.250 1.250 27 C -0.190 4.190 28 C -0.069 4.069 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.409 0.591 39 H 0.411 0.589 40 H 0.423 0.577 41 H 0.423 0.577 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.272 0.728 45 H 0.112 0.888 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 26.190 2.447 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.177 4.177 4 C -0.206 4.206 5 C 0.058 3.942 6 H 0.129 0.871 7 N -0.381 5.381 8 C 0.404 3.596 9 N -0.419 5.419 10 O -0.502 6.502 11 C 0.300 3.700 12 O -0.420 6.420 13 N -0.289 5.289 14 C -0.030 4.030 15 C -0.100 4.100 16 C -0.241 4.241 17 C 0.058 3.942 18 O -0.138 6.138 19 C -0.488 4.488 20 H 0.123 0.877 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.173 1.173 27 C -0.210 4.210 28 C -0.089 4.089 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.241 0.759 40 H 0.256 0.744 41 H 0.262 0.738 42 H 0.173 0.827 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.331 25.983 2.050 26.421 hybrid contribution -0.131 -0.946 0.550 1.102 sum 4.200 25.037 2.600 25.520 Atomic orbital electron populations 1.21863 0.93784 1.02097 1.02001 1.20857 0.96671 0.96410 0.92961 1.21770 1.01029 0.93534 1.01343 1.21966 1.01849 0.99934 0.96895 1.20678 1.00115 0.86883 0.86494 0.87091 1.44704 1.32288 1.30689 1.30415 1.15949 0.82625 0.80150 0.80830 1.42819 1.33633 1.35302 1.30136 1.90962 1.27794 1.65532 1.65884 1.20912 0.85211 0.88082 0.75767 1.90698 1.20424 1.81816 1.49057 1.43166 1.15335 1.03105 1.67314 1.17339 0.94923 0.83411 1.07319 1.20827 1.00008 0.90742 0.98380 1.21109 0.96614 0.97117 1.09216 1.19894 0.94404 0.85017 0.94892 1.83960 1.37536 1.12198 1.80121 1.21852 0.91885 0.86696 1.48321 0.87675 1.26610 1.00798 0.98601 0.96195 1.70207 1.23417 1.15535 1.46895 0.84577 0.76536 0.76324 0.78732 1.18934 1.19862 1.17318 1.20295 0.99405 0.92141 1.09116 1.20854 0.96554 0.93730 0.97739 0.92480 0.91927 0.92990 0.92609 0.92231 0.93229 0.93544 0.90707 0.90949 0.75430 0.75871 0.74388 0.73827 0.82668 0.85217 0.91914 0.87010 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.91 71.98 0.57 -1.93 16 2 C -0.07 -1.12 0.62 -52.18 -0.03 -1.15 16 3 C -0.12 -2.03 7.08 71.98 0.51 -1.52 16 4 C -0.15 -2.30 7.96 71.98 0.57 -1.72 16 5 C 0.17 3.01 1.94 44.25 0.09 3.10 16 6 H 0.11 1.90 7.46 -2.39 -0.02 1.89 16 7 N -0.72 -11.85 4.01 -461.42 -1.85 -13.70 16 8 C 0.71 12.13 7.45 179.06 1.33 13.47 16 9 N -0.85 -7.85 8.88 -184.76 -1.64 -9.49 16 10 O -0.62 -14.81 14.32 -3.97 -0.06 -14.87 16 11 C 0.51 11.63 5.13 87.66 0.45 12.08 16 12 O -0.54 -15.69 12.02 -3.06 -0.04 -15.73 16 13 N -0.64 -14.21 5.34 -303.38 -1.62 -15.83 16 14 C 0.06 1.97 6.32 38.16 0.24 2.21 16 15 C -0.08 -2.53 9.96 22.38 0.22 -2.31 16 16 C -0.22 -9.13 9.16 22.37 0.20 -8.93 16 17 C 0.11 5.35 6.65 22.59 0.15 5.50 16 18 O -0.23 -13.85 9.76 -22.94 -0.22 -14.07 16 19 C -0.41 -23.54 9.48 67.91 0.64 -22.90 16 20 H 0.11 5.41 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.39 5.49 84.82 0.47 -0.93 16 22 N -0.92 -56.55 13.67 21.61 0.30 -56.25 16 23 Si 1.02 42.19 29.55 68.60 2.03 44.21 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 27 C -0.19 -8.36 9.99 22.38 0.22 -8.14 16 28 C -0.07 -2.52 8.69 22.38 0.19 -2.32 16 29 H 0.06 0.97 7.45 -2.39 -0.02 0.95 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.05 1.15 6.28 -2.39 -0.02 1.13 16 32 H 0.05 1.03 7.90 -2.39 -0.02 1.01 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.96 5.62 -2.38 -0.01 0.95 16 35 H 0.05 0.86 7.45 -2.39 -0.02 0.85 16 36 H 0.07 1.02 8.11 -2.38 -0.02 1.00 16 37 H 0.07 0.92 8.11 -2.39 -0.02 0.90 16 38 H 0.41 6.24 8.13 -92.71 -0.75 5.48 16 39 H 0.41 1.78 8.84 -92.71 -0.82 0.96 16 40 H 0.42 2.95 8.93 -92.71 -0.83 2.13 16 41 H 0.42 6.38 8.73 -92.71 -0.81 5.57 16 42 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 43 H 0.13 5.34 5.64 -2.91 -0.02 5.33 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 46 H 0.14 4.85 6.16 -2.91 -0.02 4.84 16 Total: -1.00 -77.32 373.41 0.60 -76.72 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -2.14 Total: 34.49 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 5.84 Total: -15.49 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -4.81 Total: -95.26 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.32 Total: -44.67 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -77.32 0.60 -76.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361695479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.807 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds