Wall clock time and date at job start Tue Mar 31 2020 18:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46952 * 2 1 4 4 C 1.50708 * 109.47055 * 119.99773 * 2 1 3 5 5 H 1.07993 * 119.99724 * 118.09940 * 4 2 1 6 6 C 1.37875 * 120.00092 * 298.09801 * 4 2 1 7 7 N 1.31518 * 119.99843 * 2.56989 * 6 4 2 8 8 Si 1.86801 * 120.00067 * 182.56862 * 6 4 2 9 9 H 1.48500 * 109.46923 * 265.01173 * 8 6 4 10 10 H 1.48500 * 109.46915 * 25.00945 * 8 6 4 11 11 H 1.48490 * 109.47114 * 145.00999 * 8 6 4 12 12 C 1.52996 * 109.47277 * 240.00163 * 2 1 3 13 13 S 1.81391 * 109.47200 * 59.99631 * 12 2 1 14 14 O 1.42099 * 110.54638 * 291.62600 * 13 12 2 15 15 O 1.42102 * 110.54259 * 68.38004 * 13 12 2 16 16 N 1.65603 * 104.45139 * 179.97438 * 13 12 2 17 17 C 1.47426 * 125.64844 * 269.69587 * 16 13 12 18 18 C 1.55133 * 104.72195 * 155.81360 * 17 16 13 19 19 H 1.08997 * 111.19542 * 279.19547 * 18 17 16 20 20 C 1.52997 * 110.94205 * 155.28763 * 18 17 16 21 21 O 1.42897 * 109.46721 * 72.95672 * 20 18 17 22 22 C 1.55165 * 101.48367 * 37.29457 * 18 17 16 23 23 H 1.08999 * 110.71729 * 82.69770 * 22 18 17 24 24 C 1.52998 * 110.87281 * 205.89843 * 22 18 17 25 25 C 1.52992 * 109.47429 * 180.02562 * 24 22 18 26 26 O 1.42906 * 109.47465 * 179.97438 * 25 24 22 27 27 C 1.47016 * 125.64596 * 89.99971 * 16 13 12 28 28 H 1.09002 * 109.47223 * 293.32619 * 1 2 3 29 29 H 1.09002 * 109.47117 * 53.32835 * 1 2 3 30 30 H 1.08997 * 109.47159 * 173.32693 * 1 2 3 31 31 H 1.08997 * 109.47155 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47543 * 299.99778 * 3 2 1 33 33 H 1.09001 * 109.47433 * 60.00536 * 3 2 1 34 34 H 0.97000 * 119.99637 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47281 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.47015 * 299.99333 * 12 2 1 37 37 H 1.08994 * 110.36766 * 274.73993 * 17 16 13 38 38 H 1.09001 * 110.36427 * 37.06986 * 17 16 13 39 39 H 1.08998 * 109.47452 * 192.96036 * 20 18 17 40 40 H 1.08999 * 109.46927 * 312.95933 * 20 18 17 41 41 H 0.96700 * 113.99703 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.47231 * 300.06754 * 24 22 18 43 43 H 1.09004 * 109.46971 * 60.06009 * 24 22 18 44 44 H 1.09001 * 109.47074 * 300.00292 * 25 24 22 45 45 H 1.09004 * 109.46986 * 59.99629 * 25 24 22 46 46 H 0.96693 * 113.99927 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.88595 * 300.44053 * 27 16 13 48 48 H 1.08996 * 109.88621 * 61.60795 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6276 -1.6060 1.1318 6 6 1.7319 -0.2169 2.4824 7 7 0.9651 0.8447 2.6041 8 14 2.4140 -1.0560 4.0056 9 1 1.4115 -2.0165 4.5324 10 1 3.6597 -1.7837 3.6538 11 1 2.7130 -0.0347 5.0413 12 6 2.0400 -0.7212 -1.2492 13 16 1.4353 0.1339 -2.7303 14 8 0.0279 -0.0184 -2.8544 15 8 2.0479 1.4100 -2.8544 16 7 2.0541 -0.7400 -3.9936 17 6 3.3503 -0.4973 -4.6528 18 6 3.7367 -1.8637 -5.2776 19 1 4.1752 -2.5277 -4.5326 20 6 4.6837 -1.6741 -6.4642 21 8 5.9777 -1.3013 -5.9860 22 6 2.3549 -2.3904 -5.7474 23 1 2.0893 -1.9659 -6.7155 24 6 2.3462 -3.9192 -5.8082 25 6 0.9719 -4.4033 -6.2746 26 8 0.9640 -5.8312 -6.3319 27 6 1.3991 -1.8822 -4.6475 28 1 -0.3634 0.4069 0.9437 29 1 -0.3633 0.6138 -0.8243 30 1 -0.3633 -1.0207 -0.1194 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7534 1.1916 3.4849 35 1 3.1300 -0.7216 -1.2490 36 1 1.6768 -1.7489 -1.2492 37 1 3.2452 0.2610 -5.4287 38 1 4.0970 -0.1909 -3.9202 39 1 4.7577 -2.6072 -7.0227 40 1 4.2974 -0.8903 -7.1157 41 1 6.6309 -1.1637 -6.6856 42 1 3.1089 -4.2593 -6.5087 43 1 2.5564 -4.3233 -4.8179 44 1 0.2097 -4.0632 -5.5736 45 1 0.7611 -3.9991 -7.2647 46 1 0.1220 -6.2085 -6.6212 47 1 1.2186 -2.6728 -3.9191 48 1 0.4569 -1.5639 -5.0933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365473835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:12 Heat of formation + Delta-G solvation = -179.915063 kcal Electronic energy + Delta-G solvation = -28899.685332 eV Core-core repulsion = 24888.581096 eV Total energy + Delta-G solvation = -4011.104236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.56625 -37.19911 -36.59644 -36.52216 -36.25169 -35.28653 -33.19688 -31.65503 -31.00658 -27.64339 -26.65479 -25.71241 -25.40616 -25.20842 -23.67130 -21.04779 -20.48636 -19.44113 -18.58350 -17.81716 -17.36209 -17.19369 -16.55928 -15.94952 -15.52557 -15.44725 -15.07152 -14.80063 -14.69358 -14.38418 -13.77820 -13.51585 -13.48758 -13.21630 -12.98155 -12.80609 -12.50422 -12.43639 -12.09264 -12.03578 -11.73146 -11.46297 -11.34997 -11.19861 -11.07948 -11.02459 -10.98488 -10.91984 -10.81489 -10.69511 -10.37045 -10.30487 -10.26373 -10.17537 -10.08318 -9.65075 -9.56954 -8.92594 -8.61072 -8.38102 -6.02651 -4.14739 0.81343 3.11430 3.26480 3.34051 3.36929 3.69414 3.93538 4.14012 4.33868 4.39881 4.45164 4.66225 4.77992 4.85212 4.92286 5.01533 5.07308 5.15767 5.19862 5.22012 5.23914 5.35694 5.41372 5.56065 5.68332 5.70575 5.71796 5.77091 5.78343 5.92254 6.09890 6.20653 6.39910 6.49930 6.70267 6.79834 6.91453 7.04947 7.31736 7.31969 7.35977 7.49663 7.68583 7.99200 8.10347 8.34425 8.83879 9.50638 10.98419 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003427 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.225660 B = 8168.852332 C = 8562.710925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.285 1.285 12 C -0.581 4.581 13 S 2.606 3.394 14 O -0.960 6.960 15 O -0.958 6.958 16 N -1.022 6.022 17 C 0.132 3.868 18 C -0.096 4.096 19 H 0.097 0.903 20 C 0.087 3.913 21 O -0.570 6.570 22 C -0.088 4.088 23 H 0.089 0.911 24 C -0.111 4.111 25 C 0.071 3.929 26 O -0.576 6.576 27 C 0.123 3.877 28 H 0.097 0.903 29 H 0.024 0.976 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.027 0.973 33 H 0.096 0.904 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.379 0.621 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.380 0.620 47 H 0.068 0.932 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 -8.205 -20.639 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.540 4.540 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 C -0.715 4.715 13 S 2.707 3.293 14 O -0.951 6.951 15 O -0.949 6.949 16 N -0.858 5.858 17 C 0.007 3.993 18 C -0.116 4.116 19 H 0.116 0.884 20 C 0.008 3.992 21 O -0.375 6.375 22 C -0.108 4.108 23 H 0.107 0.893 24 C -0.149 4.149 25 C -0.006 4.006 26 O -0.382 6.382 27 C -0.002 4.002 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.226 0.774 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.227 0.773 47 H 0.087 0.913 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.432 -7.203 -19.771 21.320 hybrid contribution 0.391 -1.011 0.374 1.147 sum 3.823 -8.214 -19.397 21.408 Atomic orbital electron populations 1.22232 0.96932 0.99562 1.03056 1.17947 0.92788 0.92289 0.89093 1.22271 0.99760 0.97775 1.02355 1.20954 1.33007 1.10630 0.89378 0.92295 1.24941 0.94875 0.95038 0.98923 1.69804 1.36112 1.22823 1.23459 0.86517 0.79324 0.79180 0.82618 1.20716 1.19890 1.21070 1.30577 1.11361 1.12754 1.16788 1.05383 0.74408 0.74693 0.74858 1.93533 1.29260 1.86572 1.85732 1.93540 1.78225 1.37473 1.85655 1.58990 1.30065 1.46973 1.49811 1.21956 0.84064 0.95986 0.97292 1.22471 0.93632 0.97723 0.97775 0.88441 1.22108 0.83351 0.98640 0.95075 1.86524 1.21061 1.92120 1.37845 1.22165 0.94509 0.94850 0.99293 0.89311 1.21536 0.96743 0.93383 1.03262 1.22259 0.97894 0.80827 0.99670 1.86462 1.39949 1.20434 1.91338 1.21762 0.95697 0.88111 0.94665 0.88460 0.95707 0.94691 0.94439 0.95408 0.88543 0.92750 0.86383 0.86510 0.91445 0.90108 0.93195 0.93221 0.77369 0.90731 0.90391 0.93007 0.93597 0.77316 0.91324 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.61 37.16 0.28 -3.72 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.12 7.75 37.16 0.29 -3.84 16 4 C -0.50 -13.34 8.01 -34.44 -0.28 -13.61 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.06 1.72 5.13 -17.82 -0.09 1.62 16 7 N -0.88 -24.34 9.33 55.43 0.52 -23.82 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.58 -11.77 5.11 37.16 0.19 -11.58 16 13 S 2.61 50.43 4.68 -107.50 -0.50 49.93 16 14 O -0.96 -20.56 15.37 -57.54 -0.88 -21.44 16 15 O -0.96 -20.85 15.22 -57.54 -0.88 -21.72 16 16 N -1.02 -15.09 3.62 -111.29 -0.40 -15.49 16 17 C 0.13 1.69 6.33 -2.41 -0.02 1.67 16 18 C -0.10 -0.94 2.76 -88.35 -0.24 -1.19 16 19 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 20 C 0.09 0.67 6.50 37.16 0.24 0.91 16 21 O -0.57 -5.05 13.63 -35.23 -0.48 -5.53 16 22 C -0.09 -0.77 2.44 -88.78 -0.22 -0.99 16 23 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 24 C -0.11 -0.91 4.98 -26.74 -0.13 -1.04 16 25 C 0.07 0.55 6.89 37.15 0.26 0.80 16 26 O -0.58 -4.94 13.66 -35.23 -0.48 -5.42 16 27 C 0.12 1.46 5.64 -3.07 -0.02 1.44 16 28 H 0.10 2.61 5.98 -51.93 -0.31 2.30 16 29 H 0.02 0.59 5.96 -51.93 -0.31 0.28 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 33 H 0.10 2.60 6.02 -51.93 -0.31 2.29 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 36 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 37 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 40 H 0.05 0.33 7.96 -51.93 -0.41 -0.08 16 41 H 0.38 1.58 9.12 45.56 0.42 2.00 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.05 0.39 7.49 -51.93 -0.39 0.01 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.38 1.59 9.12 45.56 0.42 2.01 16 47 H 0.07 0.78 7.76 -51.93 -0.40 0.37 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -34.83 382.24 -8.79 -43.61 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.60 Total: 5.89 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 0.18 Total: -27.59 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.11 Total: -39.32 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.72 Total: -54.11 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.50 Total: 49.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.83 -8.79 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365473835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.304 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds