Wall clock time and date at job start Tue Mar 31 2020 18:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34749 * 117.00341 * 2 1 4 4 O 1.21503 * 119.99494 * 0.02562 * 3 2 1 5 5 C 1.47453 * 119.99937 * 179.97438 * 3 2 1 6 6 C 1.40352 * 120.48638 * 179.97438 * 5 3 2 7 7 C 1.36908 * 118.47555 * 179.97438 * 6 5 3 8 8 C 1.39287 * 119.39312 * 0.02562 * 7 6 5 9 9 N 1.38912 * 119.52613 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00155 * 174.90645 * 9 8 7 11 11 O 1.21575 * 119.99950 * 5.08997 * 10 9 8 12 12 N 1.34776 * 120.00408 * 185.09445 * 10 9 8 13 13 C 1.46500 * 120.00267 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47023 * 299.99766 * 14 13 12 16 16 C 1.53001 * 109.47277 * 59.99601 * 14 13 12 17 17 C 1.53003 * 109.47044 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46867 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00079 * 0.02562 * 18 17 14 20 20 C 1.37874 * 119.99716 * 180.02562 * 18 17 14 21 21 N 1.31512 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00097 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46899 * 90.00173 * 22 20 18 24 24 H 1.48498 * 109.47121 * 210.00146 * 22 20 18 25 25 H 1.48497 * 109.46801 * 330.00048 * 22 20 18 26 26 N 1.32542 * 120.95011 * 359.97253 * 8 7 6 27 27 C 1.31666 * 121.65151 * 0.04886 * 26 8 7 28 28 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46875 * 299.99639 * 1 2 3 30 30 H 1.08994 * 109.46785 * 59.99884 * 1 2 3 31 31 H 1.08000 * 120.76017 * 359.96293 * 6 5 3 32 32 H 1.08000 * 120.30208 * 179.72463 * 7 6 5 33 33 H 0.97001 * 120.00052 * 354.89680 * 9 8 7 34 34 H 0.97001 * 119.99311 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.46917 * 299.99812 * 13 12 10 36 36 H 1.08996 * 109.46886 * 59.99662 * 13 12 10 37 37 H 1.09004 * 109.47178 * 60.00331 * 15 14 13 38 38 H 1.08996 * 109.47225 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46822 * 300.00290 * 15 14 13 40 40 H 1.09001 * 109.46979 * 60.00010 * 16 14 13 41 41 H 1.08996 * 109.46913 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47276 * 300.00203 * 16 14 13 43 43 H 1.08996 * 109.46793 * 299.99726 * 17 14 13 44 44 H 1.08996 * 109.46612 * 59.99821 * 17 14 13 45 45 H 0.97004 * 120.00092 * 179.97438 * 21 20 18 46 46 H 1.08003 * 119.74505 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2196 0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1842 2.5227 0.0000 7 6 5.5531 2.5462 0.0011 8 6 6.2575 1.3446 0.0022 9 7 7.6465 1.3653 0.0028 10 6 8.3375 0.2129 0.1074 11 8 7.7490 -0.8509 0.1081 12 7 9.6810 0.2398 0.2114 13 6 10.4322 -1.0128 0.3246 14 6 11.9270 -0.7034 0.4288 15 6 12.3800 0.0516 -0.8224 16 6 12.1842 0.1592 1.6660 17 6 12.7115 -2.0116 0.5477 18 6 14.1838 -1.7069 0.6497 19 1 14.5258 -0.6826 0.6320 20 6 15.0943 -2.7357 0.7656 21 7 16.3791 -2.4698 0.8552 22 14 14.5028 -4.5074 0.7970 23 1 14.4548 -5.0377 -0.5892 24 1 15.4379 -5.3272 1.6085 25 1 13.1455 -4.5654 1.3965 26 7 5.6216 0.1817 0.0027 27 6 4.3067 0.1133 0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.6159 3.4411 -0.0014 32 1 6.0819 3.4879 -0.0037 33 1 8.1190 2.2091 -0.0723 34 1 10.1505 1.0886 0.2106 35 1 10.1098 -1.5505 1.2163 36 1 10.2485 -1.6275 -0.5566 37 1 11.8210 0.9836 -0.9067 38 1 13.4449 0.2716 -0.7484 39 1 12.1966 -0.5630 -1.7038 40 1 11.8615 -0.3787 2.5575 41 1 13.2491 0.3799 1.7399 42 1 11.6253 1.0911 1.5818 43 1 12.3887 -2.5491 1.4393 44 1 12.5282 -2.6264 -0.3335 45 1 17.0197 -3.1936 0.9371 46 1 3.8203 -0.8511 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366267038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:47 Heat of formation + Delta-G solvation = -69.561691 kcal Electronic energy + Delta-G solvation = -27846.646788 eV Core-core repulsion = 23737.176633 eV Total energy + Delta-G solvation = -4109.470155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39129 -40.55907 -39.45066 -37.45648 -36.79462 -35.14989 -33.77699 -32.91792 -32.16022 -30.97820 -28.14415 -27.79103 -26.61009 -26.40544 -24.54182 -24.30452 -22.54185 -21.57945 -20.85339 -19.15713 -18.64129 -18.38382 -17.55021 -17.38954 -16.83635 -16.73284 -16.00773 -15.86247 -15.30401 -14.93197 -14.52543 -14.43177 -14.29589 -13.91076 -13.86299 -13.50148 -13.47254 -13.45583 -13.11702 -12.76952 -12.52737 -12.45074 -12.29345 -11.35162 -11.21420 -11.19642 -11.07413 -11.04657 -11.02718 -10.64852 -10.54013 -10.50414 -10.36519 -10.01133 -9.77828 -9.61803 -9.36910 -9.02964 -8.98930 -8.62880 -8.55584 -6.06438 -4.04015 0.18320 0.89444 2.14664 2.20343 2.31986 3.07913 3.30584 3.38798 3.42794 3.59233 3.76943 4.20060 4.31420 4.43972 4.44708 4.53030 4.63282 4.72077 4.79767 5.12136 5.15667 5.26042 5.28655 5.41411 5.48608 5.57673 5.58140 5.79026 5.95702 6.03524 6.05436 6.07499 6.26527 6.28874 6.40139 6.52748 6.54871 6.63255 6.85646 6.97483 7.00950 7.16854 7.33159 7.33351 7.50077 7.75550 7.91252 8.48164 8.51150 8.97134 9.56186 11.06145 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.001872 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.904656 B =14955.770916 C =15756.715709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.521 3.479 4 O -0.513 6.513 5 C -0.232 4.232 6 C 0.020 3.980 7 C -0.225 4.225 8 C 0.423 3.577 9 N -0.666 5.666 10 C 0.687 3.313 11 O -0.524 6.524 12 N -0.730 5.730 13 C 0.144 3.856 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.512 4.512 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 N -0.480 5.480 27 C 0.203 3.797 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.416 0.584 34 H 0.396 0.604 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.019 0.981 44 H 0.014 0.986 45 H 0.262 0.738 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.867 11.569 -2.101 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.366 3.634 4 O -0.402 6.402 5 C -0.238 4.238 6 C -0.005 4.005 7 C -0.249 4.249 8 C 0.189 3.811 9 N -0.313 5.313 10 C 0.386 3.614 11 O -0.394 6.394 12 N -0.386 5.386 13 C 0.021 3.979 14 C -0.064 4.064 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.550 4.550 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.189 1.189 26 N -0.194 5.194 27 C 0.042 3.958 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.253 0.747 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -26.779 9.937 -2.055 28.637 hybrid contribution -0.330 0.679 -0.031 0.756 sum -27.109 10.616 -2.086 29.188 Atomic orbital electron populations 1.23296 0.75704 1.03943 1.02643 1.86551 1.23768 1.32485 1.84332 1.20833 0.88616 0.81491 0.72415 1.90835 1.66776 1.36016 1.46605 1.19973 0.90385 0.96157 1.17246 1.21118 0.93396 0.97349 0.88675 1.21133 0.94545 0.97906 1.11318 1.18535 0.84107 0.89862 0.88619 1.42887 1.03597 1.10717 1.74100 1.16109 0.82354 0.83742 0.79227 1.91066 1.67870 1.27468 1.53034 1.45407 1.03985 1.11346 1.77886 1.21589 0.91010 0.83534 1.01811 1.20716 0.90981 0.98889 0.95789 1.21776 1.02384 0.97626 0.96784 1.21771 1.02706 0.97126 0.96940 1.19589 0.96218 0.91556 0.96595 1.21063 0.88658 0.95166 1.50085 0.90415 1.24999 0.94793 0.98938 0.94705 1.69899 1.01065 1.32442 1.50821 0.86858 0.79114 0.85430 0.78379 1.20358 1.21508 1.18938 1.67979 1.09520 1.25464 1.16481 1.23223 0.87899 0.98100 0.86532 0.87803 0.91767 0.91779 0.83187 0.83582 0.74743 0.76882 0.91672 0.91670 0.95114 0.90838 0.93334 0.93332 0.90843 0.95112 0.96275 0.96725 0.92778 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.35 -3.07 9.83 -40.63 -0.40 -3.47 16 3 C 0.52 5.23 7.90 34.48 0.27 5.50 16 4 O -0.51 -6.12 16.20 -19.27 -0.31 -6.43 16 5 C -0.23 -2.22 5.89 -104.83 -0.62 -2.83 16 6 C 0.02 0.16 9.65 -39.27 -0.38 -0.22 16 7 C -0.23 -1.67 9.86 -39.67 -0.39 -2.07 16 8 C 0.42 4.53 7.41 -154.93 -1.15 3.38 16 9 N -0.67 -6.55 5.38 -15.83 -0.09 -6.64 16 10 C 0.69 9.52 8.52 -86.92 -0.74 8.78 16 11 O -0.52 -9.57 14.58 5.30 0.08 -9.49 16 12 N -0.73 -9.27 4.96 -65.23 -0.32 -9.60 16 13 C 0.14 2.28 4.56 -4.04 -0.02 2.26 16 14 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 15 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 16 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 18 C -0.51 -13.40 8.20 -34.44 -0.28 -13.68 16 19 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 20 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 21 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 22 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 26 N -0.48 -6.33 7.85 -12.06 -0.09 -6.42 16 27 C 0.20 2.15 10.79 -17.11 -0.18 1.96 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.15 0.97 7.73 -52.49 -0.41 0.57 16 32 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.42 2.32 8.71 -40.82 -0.36 1.97 16 34 H 0.40 3.98 6.18 -40.82 -0.25 3.72 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 38 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 42 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 44 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.17 1.54 7.61 -52.48 -0.40 1.14 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -35.08 380.77 -7.83 -42.91 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.44 Total: 1.65 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.09 Total: 1.25 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.27 Total: -48.73 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.63 Total: -19.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.08 -7.83 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366267038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.655 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds