Wall clock time and date at job start Tue Mar 31 2020 18:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34749 * 117.00341 * 2 1 4 4 O 1.21503 * 119.99494 * 0.02562 * 3 2 1 5 5 C 1.47453 * 119.99937 * 179.97438 * 3 2 1 6 6 C 1.40352 * 120.48638 * 179.97438 * 5 3 2 7 7 C 1.36908 * 118.47555 * 179.97438 * 6 5 3 8 8 C 1.39287 * 119.39312 * 0.02562 * 7 6 5 9 9 N 1.38912 * 119.52613 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00155 * 174.90645 * 9 8 7 11 11 O 1.21575 * 119.99950 * 5.08997 * 10 9 8 12 12 N 1.34776 * 120.00408 * 185.09445 * 10 9 8 13 13 C 1.46500 * 120.00267 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47023 * 299.99766 * 14 13 12 16 16 C 1.53001 * 109.47277 * 59.99601 * 14 13 12 17 17 C 1.53003 * 109.47044 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46867 * 179.97438 * 17 14 13 19 19 H 1.07999 * 120.00079 * 0.02562 * 18 17 14 20 20 C 1.37874 * 119.99716 * 180.02562 * 18 17 14 21 21 N 1.31512 * 119.99981 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00097 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46899 * 90.00173 * 22 20 18 24 24 H 1.48498 * 109.47121 * 210.00146 * 22 20 18 25 25 H 1.48497 * 109.46801 * 330.00048 * 22 20 18 26 26 N 1.32542 * 120.95011 * 359.97253 * 8 7 6 27 27 C 1.31666 * 121.65151 * 0.04886 * 26 8 7 28 28 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46875 * 299.99639 * 1 2 3 30 30 H 1.08994 * 109.46785 * 59.99884 * 1 2 3 31 31 H 1.08000 * 120.76017 * 359.96293 * 6 5 3 32 32 H 1.08000 * 120.30208 * 179.72463 * 7 6 5 33 33 H 0.97001 * 120.00052 * 354.89680 * 9 8 7 34 34 H 0.97001 * 119.99311 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.46917 * 299.99812 * 13 12 10 36 36 H 1.08996 * 109.46886 * 59.99662 * 13 12 10 37 37 H 1.09004 * 109.47178 * 60.00331 * 15 14 13 38 38 H 1.08996 * 109.47225 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46822 * 300.00290 * 15 14 13 40 40 H 1.09001 * 109.46979 * 60.00010 * 16 14 13 41 41 H 1.08996 * 109.46913 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47276 * 300.00203 * 16 14 13 43 43 H 1.08996 * 109.46793 * 299.99726 * 17 14 13 44 44 H 1.08996 * 109.46612 * 59.99821 * 17 14 13 45 45 H 0.97004 * 120.00092 * 179.97438 * 21 20 18 46 46 H 1.08003 * 119.74505 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2196 0.0005 5 6 3.5364 1.2777 0.0006 6 6 4.1842 2.5227 0.0000 7 6 5.5531 2.5462 0.0011 8 6 6.2575 1.3446 0.0022 9 7 7.6465 1.3653 0.0028 10 6 8.3375 0.2129 0.1074 11 8 7.7490 -0.8509 0.1081 12 7 9.6810 0.2398 0.2114 13 6 10.4322 -1.0128 0.3246 14 6 11.9270 -0.7034 0.4288 15 6 12.3800 0.0516 -0.8224 16 6 12.1842 0.1592 1.6660 17 6 12.7115 -2.0116 0.5477 18 6 14.1838 -1.7069 0.6497 19 1 14.5258 -0.6826 0.6320 20 6 15.0943 -2.7357 0.7656 21 7 16.3791 -2.4698 0.8552 22 14 14.5028 -4.5074 0.7970 23 1 14.4548 -5.0377 -0.5892 24 1 15.4379 -5.3272 1.6085 25 1 13.1455 -4.5654 1.3965 26 7 5.6216 0.1817 0.0027 27 6 4.3067 0.1133 0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.6159 3.4411 -0.0014 32 1 6.0819 3.4879 -0.0037 33 1 8.1190 2.2091 -0.0723 34 1 10.1505 1.0886 0.2106 35 1 10.1098 -1.5505 1.2163 36 1 10.2485 -1.6275 -0.5566 37 1 11.8210 0.9836 -0.9067 38 1 13.4449 0.2716 -0.7484 39 1 12.1966 -0.5630 -1.7038 40 1 11.8615 -0.3787 2.5575 41 1 13.2491 0.3799 1.7399 42 1 11.6253 1.0911 1.5818 43 1 12.3887 -2.5491 1.4393 44 1 12.5282 -2.6264 -0.3335 45 1 17.0197 -3.1936 0.9371 46 1 3.8203 -0.8511 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366267038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:46 Heat of formation + Delta-G solvation = -92.863466 kcal Electronic energy + Delta-G solvation = -27847.657229 eV Core-core repulsion = 23737.176633 eV Total energy + Delta-G solvation = -4110.480596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18574 -41.39489 -40.37352 -38.79051 -37.53333 -36.08746 -35.22413 -34.02128 -33.61115 -31.77500 -29.71459 -28.62761 -27.95506 -27.57695 -25.45458 -25.07808 -24.16753 -22.39930 -21.84533 -20.24887 -19.62646 -19.15733 -18.89786 -18.59995 -18.12571 -17.41593 -16.87920 -16.81693 -16.49876 -16.00992 -15.61180 -15.56921 -15.48217 -15.02488 -14.94908 -14.89965 -14.25998 -14.19094 -14.17085 -14.09905 -13.85451 -13.80176 -13.02176 -12.93045 -12.82816 -12.60220 -12.27994 -12.14474 -11.97088 -11.82680 -11.81686 -11.76999 -11.58222 -11.48612 -11.17897 -11.06483 -10.89598 -10.69247 -10.24164 -10.10763 -9.42326 -8.21338 -6.21129 -0.56220 0.24344 1.33538 1.36750 1.37265 1.39986 1.49566 1.68440 2.10203 2.40008 2.82396 2.91569 3.14377 3.45037 3.65664 3.80408 3.86432 3.93703 4.03187 4.09019 4.18468 4.31135 4.35899 4.55293 4.65065 4.71662 4.74526 4.75078 4.82049 4.97461 4.98318 5.03958 5.08768 5.12740 5.28247 5.32414 5.36451 5.43810 5.48120 5.57485 5.60025 5.71464 5.72753 5.79615 6.39205 6.59213 6.67938 6.85891 7.10417 7.41681 7.51020 8.94030 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.001872 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.904656 B =14955.770916 C =15756.715709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.523 3.477 4 O -0.535 6.535 5 C -0.233 4.233 6 C 0.019 3.981 7 C -0.199 4.199 8 C 0.400 3.600 9 N -0.650 5.650 10 C 0.688 3.312 11 O -0.572 6.572 12 N -0.717 5.717 13 C 0.159 3.841 14 C -0.058 4.058 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.004 4.004 18 C -0.500 4.500 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.932 3.068 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.252 1.252 26 N -0.524 5.524 27 C 0.193 3.807 28 H 0.131 0.869 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.438 0.562 34 H 0.412 0.588 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.107 13.212 -2.329 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.369 3.631 4 O -0.426 6.426 5 C -0.238 4.238 6 C -0.007 4.007 7 C -0.222 4.222 8 C 0.167 3.833 9 N -0.299 5.299 10 C 0.388 3.612 11 O -0.446 6.446 12 N -0.374 5.374 13 C 0.034 3.966 14 C -0.058 4.058 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.539 4.539 19 H 0.072 0.928 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.175 1.175 26 N -0.239 5.239 27 C 0.033 3.967 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.279 0.721 34 H 0.250 0.750 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -29.045 11.638 -2.288 31.373 hybrid contribution 0.273 0.254 0.033 0.374 sum -28.772 11.892 -2.256 31.214 Atomic orbital electron populations 1.23589 0.74075 1.05860 1.02777 1.86552 1.25436 1.31851 1.83851 1.20933 0.88802 0.81527 0.71803 1.90819 1.67250 1.36691 1.47883 1.20085 0.90175 0.96680 1.16880 1.21429 0.93867 0.97378 0.88005 1.21452 0.94127 0.98242 1.08398 1.18857 0.84298 0.90438 0.89740 1.42551 1.03378 1.10426 1.73516 1.16213 0.82320 0.84116 0.78580 1.91044 1.68812 1.29684 1.55085 1.45054 1.03747 1.10938 1.77700 1.21163 0.89875 0.84670 1.00884 1.20564 0.91468 0.96793 0.96987 1.21707 1.01134 0.99353 0.95894 1.21702 1.01463 0.98766 0.96133 1.19571 0.94266 0.94254 0.96139 1.21372 0.90816 0.93979 1.47696 0.92831 1.25819 0.94913 1.03177 0.95174 1.70037 1.02347 1.33557 1.53279 0.85924 0.79072 0.80662 0.78585 1.19775 1.21598 1.17545 1.67850 1.10673 1.27573 1.17798 1.23246 0.87427 0.98813 0.87190 0.85085 0.91663 0.91635 0.81290 0.79382 0.72147 0.74996 0.92809 0.92677 0.90959 0.93652 0.93744 0.93821 0.93637 0.90988 0.96730 0.96856 0.92917 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.36 -5.96 9.83 -56.60 -0.56 -6.52 16 3 C 0.52 10.01 7.90 70.25 0.55 10.56 16 4 O -0.54 -12.16 16.20 19.83 0.32 -11.84 16 5 C -0.23 -4.15 5.89 -20.00 -0.12 -4.27 16 6 C 0.02 0.25 9.65 22.47 0.22 0.46 16 7 C -0.20 -2.24 9.86 22.21 0.22 -2.02 16 8 C 0.40 7.65 7.41 133.09 0.99 8.64 16 9 N -0.65 -10.87 5.38 -322.27 -1.73 -12.60 16 10 C 0.69 17.71 8.52 179.05 1.53 19.24 16 11 O -0.57 -20.58 14.58 -3.95 -0.06 -20.64 16 12 N -0.72 -16.27 4.96 -478.55 -2.37 -18.64 16 13 C 0.16 4.78 4.56 86.38 0.39 5.17 16 14 C -0.06 -1.93 0.54 -52.18 -0.03 -1.95 16 15 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 16 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 17 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 18 C -0.50 -26.66 8.20 25.60 0.21 -26.45 16 19 H 0.05 3.06 5.92 -2.91 -0.02 3.04 16 20 C 0.01 0.31 5.47 84.65 0.46 0.77 16 21 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 22 Si 0.93 44.12 27.47 68.60 1.88 46.00 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 26 N -0.52 -13.44 7.85 -192.06 -1.51 -14.95 16 27 C 0.19 4.01 10.79 85.05 0.92 4.93 16 28 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.17 1.63 7.73 -2.91 -0.02 1.61 16 32 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.44 3.03 8.71 -92.71 -0.81 2.22 16 34 H 0.41 6.57 6.18 -92.71 -0.57 6.00 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.61 6.86 -2.38 -0.02 1.59 16 38 H 0.04 1.66 6.62 -2.39 -0.02 1.65 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 42 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 43 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 44 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.18 3.22 7.61 -2.91 -0.02 3.20 16 Total: -1.00 -79.36 380.77 3.66 -75.70 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -0.41 Total: 11.25 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 7.79 Total: 9.99 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -5.31 Total: -103.95 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.29 Total: -38.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -79.36 3.66 -75.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366267038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.163 kcal (2) G-P(sol) polarization free energy of solvation -79.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds